Wall clock time and date at job start Sun Mar 7 2021 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37644 * 125.67633 * 2 1 4 4 C 1.46670 * 126.22451 * 0.02562 * 3 2 1 5 5 O 1.21703 * 119.99990 * 355.02693 * 4 3 2 6 6 N 1.34775 * 120.00013 * 175.01977 * 4 3 2 7 7 C 1.46500 * 120.00104 * 185.14048 * 6 4 3 8 8 H 1.09004 * 112.85180 * 23.79681 * 7 6 4 9 9 C 1.53775 * 113.61585 * 155.00041 * 7 6 4 10 10 C 1.53778 * 87.08434 * 139.97905 * 9 7 6 11 11 C 1.53002 * 113.61828 * 219.93485 * 10 9 7 12 12 C 1.53000 * 113.61733 * 89.11413 * 10 9 7 13 13 O 1.42897 * 109.47242 * 180.02562 * 12 10 9 14 14 C 1.53782 * 87.08204 * 334.56674 * 10 9 7 15 15 C 1.37884 * 107.54668 * 180.02562 * 3 2 1 16 16 C 1.39874 * 107.09633 * 359.76506 * 15 3 2 17 17 Br 1.89096 * 126.07429 * 180.24010 * 16 15 3 18 18 C 1.35507 * 107.84948 * 0.38047 * 16 15 3 19 19 C 1.50706 * 125.56883 * 179.87976 * 18 16 15 20 20 O 1.42898 * 109.47014 * 114.88769 * 19 18 16 21 21 Si 1.86295 * 109.46837 * 234.88705 * 19 18 16 22 22 H 1.08993 * 109.47545 * 275.46595 * 1 2 3 23 23 H 1.09000 * 109.47251 * 35.46764 * 1 2 3 24 24 H 1.08996 * 109.47082 * 155.46060 * 1 2 3 25 25 H 0.96999 * 120.00323 * 5.13608 * 6 4 3 26 26 H 1.09004 * 113.61347 * 254.52901 * 9 7 6 27 27 H 1.08996 * 113.61541 * 25.43242 * 9 7 6 28 28 H 1.09006 * 109.46670 * 59.99633 * 11 10 9 29 29 H 1.08996 * 109.47144 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.46753 * 300.00262 * 11 10 9 31 31 H 1.09000 * 109.47100 * 300.00224 * 12 10 9 32 32 H 1.09003 * 109.47021 * 60.00057 * 12 10 9 33 33 H 0.96703 * 114.00066 * 180.02562 * 13 12 10 34 34 H 1.09005 * 113.61500 * 270.88855 * 14 10 9 35 35 H 1.08996 * 113.61601 * 139.97927 * 14 10 9 36 36 H 1.08003 * 126.44935 * 180.02562 * 15 3 2 37 37 H 1.08999 * 109.47126 * 354.88725 * 19 18 16 38 38 H 0.96699 * 114.00164 * 59.99848 * 20 19 18 39 39 H 1.48499 * 110.00173 * 63.68779 * 21 19 18 40 40 H 1.48503 * 109.99690 * 185.00612 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1181 0.0000 4 6 1.8121 2.5122 0.0005 5 8 0.6249 2.7645 -0.0903 6 7 2.7080 3.5140 0.1018 7 6 2.2474 4.9000 0.2158 8 1 1.2357 4.9785 0.6140 9 6 3.2566 5.8294 0.9103 10 6 2.8740 6.8939 -0.1315 11 6 4.0649 7.7072 -0.6427 12 6 1.6941 7.7706 0.2928 13 8 1.4148 8.7234 -0.7349 14 6 2.4765 5.7320 -1.0572 15 6 3.5781 0.6891 -0.0006 16 6 3.5529 -0.7094 0.0045 17 35 5.0609 -1.8502 0.0126 18 6 2.2558 -1.1015 -0.0005 19 6 1.7713 -2.5286 -0.0001 20 8 1.0759 -2.7952 1.2195 21 14 0.6214 -2.7942 -1.4415 22 1 -0.3634 0.0979 1.0229 23 1 -0.3634 0.8370 -0.5963 24 1 -0.3633 -0.9348 -0.4268 25 1 3.6579 3.3173 0.0993 26 1 2.9758 6.0952 1.9294 27 1 4.2894 5.4908 0.8293 28 1 4.7873 7.0386 -1.1109 29 1 3.7189 8.4375 -1.3741 30 1 4.5368 8.2245 0.1927 31 1 0.8166 7.1449 0.4558 32 1 1.9437 8.2939 1.2158 33 1 0.6766 9.3146 -0.5331 34 1 3.2961 5.3665 -1.6759 35 1 1.5659 5.9190 -1.6263 36 1 4.4582 1.3150 -0.0004 37 1 2.6241 -3.2018 -0.0868 38 1 0.3034 -2.2315 1.3631 39 1 1.3558 -2.6068 -2.7185 40 1 0.0426 -4.1606 -1.3843 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_5000100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:41:51 Heat of formation + Delta-G solvation = -38.451660 kcal Electronic energy + Delta-G solvation = -24356.348391 eV Core-core repulsion = 20606.788605 eV Total energy + Delta-G solvation = -3749.559785 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.057 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.90660 -41.33142 -39.70350 -37.90389 -37.16185 -35.17478 -34.28485 -32.26670 -31.05465 -30.19847 -27.47683 -27.36298 -26.95192 -26.72519 -23.77811 -22.57407 -21.55770 -20.71642 -19.46903 -18.85772 -18.30725 -18.07073 -17.50637 -17.10937 -16.79629 -16.16657 -16.06590 -15.87361 -15.69115 -15.18903 -14.72055 -14.42855 -14.36570 -14.35152 -14.25610 -14.14926 -13.70838 -13.57899 -13.24010 -13.19221 -12.98233 -12.94063 -12.63651 -12.39926 -11.94086 -11.80046 -11.47121 -11.33044 -11.25136 -11.07424 -10.84459 -10.76812 -10.14105 -9.81220 -9.30409 -5.21706 0.13094 0.60640 0.89839 1.15868 1.43193 1.52281 1.81066 2.14610 2.28378 3.15645 3.17400 3.40476 3.41466 3.53558 3.65276 3.73087 3.79415 3.89196 4.05213 4.23024 4.25089 4.31458 4.40176 4.42562 4.56412 4.60575 4.62185 4.72303 4.77598 4.83344 4.87664 4.91645 5.06212 5.17580 5.23242 5.27224 5.43624 5.52282 5.56214 5.81881 6.41557 6.43442 6.90078 7.05125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.394 5.394 3 C -0.043 4.043 4 C 0.593 3.407 5 O -0.570 6.570 6 N -0.695 5.695 7 C 0.125 3.875 8 H 0.104 0.896 9 C -0.121 4.121 10 C -0.084 4.084 11 C -0.129 4.129 12 C 0.093 3.907 13 O -0.590 6.590 14 C -0.139 4.139 15 C -0.106 4.106 16 C -0.181 4.181 17 Br -0.029 7.029 18 C 0.048 3.952 19 C -0.054 4.054 20 O -0.541 6.541 21 Si 0.746 3.254 22 H 0.110 0.890 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.416 0.584 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.177 0.823 37 H 0.125 0.875 38 H 0.390 0.610 39 H -0.284 1.284 40 H -0.264 1.264 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 3.460 1.946 4.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.067 5.067 3 C -0.157 4.157 4 C 0.381 3.619 5 O -0.451 6.451 6 N -0.345 5.345 7 C 0.020 3.980 8 H 0.122 0.878 9 C -0.159 4.159 10 C -0.085 4.085 11 C -0.186 4.186 12 C 0.015 3.985 13 O -0.398 6.398 14 C -0.178 4.178 15 C -0.133 4.133 16 C -0.267 4.267 17 Br 0.056 6.944 18 C -0.073 4.073 19 C -0.163 4.163 20 O -0.347 6.347 21 Si 0.647 3.353 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.254 0.746 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.194 0.806 37 H 0.143 0.857 38 H 0.240 0.760 39 H -0.210 1.210 40 H -0.190 1.190 Dipole moment (debyes) X Y Z Total from point charges -1.519 2.057 0.995 2.744 hybrid contribution 0.348 0.262 0.361 0.566 sum -1.171 2.319 1.356 2.931 Atomic orbital electron populations 1.22772 0.73743 1.05426 1.06595 1.43890 1.07893 1.03501 1.51439 1.20050 0.89984 0.87769 1.17916 1.16950 0.85580 0.83577 0.75812 1.90802 1.17305 1.85072 1.51911 1.45573 1.10122 1.05580 1.73237 1.22600 0.99649 0.78203 0.97527 0.87795 1.23426 1.00265 0.93299 0.98861 1.21605 0.95901 0.93548 0.97400 1.21567 0.96057 0.99854 1.01108 1.22009 0.96048 0.90437 0.90001 1.86424 1.57348 1.50323 1.45707 1.23553 1.01971 0.95414 0.96855 1.21498 0.95896 0.92733 1.03204 1.20984 0.91412 0.94989 1.19308 1.96657 1.36134 1.63398 1.98252 1.20813 0.89875 0.90206 1.06450 1.24960 1.03111 0.90046 0.98232 1.86591 1.46023 1.62967 1.39143 0.94459 0.83532 0.84046 0.73282 0.87177 0.87242 0.87334 0.74614 0.89370 0.87195 0.91904 0.93181 0.92043 0.93124 0.92098 0.75475 0.88992 0.92454 0.80605 0.85734 0.76020 1.21021 1.18960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.33 8.94 127.77 1.14 0.81 16 2 N -0.39 0.06 3.10 -519.62 -1.61 -1.55 16 3 C -0.04 -0.06 6.88 40.35 0.28 0.22 16 4 C 0.59 1.33 7.77 86.44 0.67 2.00 16 5 O -0.57 -4.30 14.41 -4.36 -0.06 -4.36 16 6 N -0.69 2.04 5.34 -443.99 -2.37 -0.33 16 7 C 0.12 -0.32 3.86 45.52 0.18 -0.15 16 8 H 0.10 0.05 7.04 -2.38 -0.02 0.03 16 9 C -0.12 0.76 6.98 31.12 0.22 0.98 16 10 C -0.08 0.23 1.19 -51.65 -0.06 0.17 16 11 C -0.13 0.21 9.08 71.98 0.65 0.86 16 12 C 0.09 -0.23 6.39 71.98 0.46 0.23 16 13 O -0.59 -0.18 12.64 -148.98 -1.88 -2.06 16 14 C -0.14 0.14 7.00 31.12 0.22 0.36 16 15 C -0.11 -0.05 10.34 22.58 0.23 0.19 16 16 C -0.18 -0.65 6.53 22.03 0.14 -0.51 16 17 Br -0.03 -0.12 33.06 -20.37 -0.67 -0.79 16 18 C 0.05 0.09 5.29 41.35 0.22 0.31 16 19 C -0.05 -0.04 2.87 71.24 0.20 0.17 16 20 O -0.54 -0.05 12.88 -148.98 -1.92 -1.97 16 21 Si 0.75 -1.17 29.25 68.60 2.01 0.84 16 22 H 0.11 -1.03 8.14 -2.39 -0.02 -1.05 16 23 H 0.11 -0.40 6.54 -2.39 -0.02 -0.41 16 24 H 0.11 -1.26 3.78 -2.39 -0.01 -1.27 16 25 H 0.42 -3.26 7.63 -92.71 -0.71 -3.97 16 26 H 0.09 -0.66 8.10 -2.38 -0.02 -0.68 16 27 H 0.11 -0.99 8.08 -2.39 -0.02 -1.01 16 28 H 0.06 -0.20 7.95 -2.38 -0.02 -0.22 16 29 H 0.05 0.13 7.32 -2.39 -0.02 0.11 16 30 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.05 -0.15 7.34 -2.39 -0.02 -0.17 16 32 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.40 -3.01 9.12 -74.05 -0.68 -3.69 16 34 H 0.09 -0.18 7.97 -2.38 -0.02 -0.19 16 35 H 0.06 0.18 8.10 -2.39 -0.02 0.16 16 36 H 0.18 -0.91 7.45 -2.91 -0.02 -0.93 16 37 H 0.13 0.36 6.96 -2.39 -0.02 0.34 16 38 H 0.39 -3.22 7.45 -74.06 -0.55 -3.77 16 39 H -0.28 -1.49 7.11 99.48 0.71 -0.79 16 40 H -0.26 -0.85 7.11 99.48 0.71 -0.14 16 Total: 0.00 -19.99 343.26 -2.75 -22.74 By element: Atomic # 1 Polarization: -17.36 SS G_CDS: -0.79 Total: -18.15 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 4.56 Total: 5.64 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -3.98 Total: -1.88 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -3.86 Total: -8.39 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.01 Total: 0.84 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.67 Total: -0.79 kcal Total: -19.99 -2.75 -22.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_5000100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.716 kcal (2) G-P(sol) polarization free energy of solvation -19.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds