Wall clock time and date at job start Sun Mar 7 2021 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36000 * 116.99907 * 2 1 4 4 C 1.39155 * 120.06894 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.07337 * 0.02860 * 4 3 2 6 6 C 1.42894 * 116.99463 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47045 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99813 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00482 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00107 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.85026 * 327.67940 * 10 9 7 12 12 C 1.53777 * 113.61579 * 98.99243 * 10 9 7 13 13 C 1.53783 * 87.08285 * 89.11351 * 12 10 9 14 14 C 1.53004 * 113.61323 * 270.88318 * 13 12 10 15 15 C 1.52996 * 113.68835 * 139.99714 * 13 12 10 16 16 O 1.42904 * 109.47723 * 82.46462 * 15 13 12 17 17 C 1.53778 * 87.07803 * 25.43473 * 13 12 10 18 18 C 1.38564 * 119.85058 * 180.02562 * 4 3 2 19 19 C 1.38242 * 119.99907 * 359.97438 * 18 4 3 20 20 C 1.38252 * 120.14801 * 359.97438 * 19 18 4 21 21 C 1.50697 * 119.92716 * 180.02562 * 20 19 18 22 22 O 1.42896 * 109.47530 * 119.99911 * 21 20 19 23 23 Si 1.86303 * 109.47179 * 359.97438 * 21 20 19 24 24 C 1.38240 * 120.14648 * 0.27380 * 20 19 18 25 25 H 1.08993 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47263 * 300.00363 * 1 2 3 27 27 H 1.09006 * 109.46638 * 59.99879 * 1 2 3 28 28 H 1.08996 * 109.47775 * 299.99483 * 6 5 4 29 29 H 1.09001 * 109.47567 * 59.99800 * 6 5 4 30 30 H 0.97001 * 119.99636 * 0.02562 * 9 7 6 31 31 H 1.09000 * 113.61612 * 203.66131 * 12 10 9 32 32 H 1.09005 * 113.61676 * 334.56429 * 12 10 9 33 33 H 1.08998 * 109.46840 * 150.03502 * 14 13 12 34 34 H 1.08999 * 109.47450 * 270.03408 * 14 13 12 35 35 H 1.08995 * 109.47070 * 30.03324 * 14 13 12 36 36 H 1.09005 * 109.46748 * 202.46559 * 15 13 12 37 37 H 1.09003 * 109.47151 * 322.46078 * 15 13 12 38 38 H 0.96698 * 113.99685 * 180.02562 * 16 15 13 39 39 H 1.09007 * 113.60899 * 220.01917 * 17 13 12 40 40 H 1.08998 * 113.69188 * 89.12867 * 17 13 12 41 41 H 1.07998 * 120.00099 * 180.02562 * 18 4 3 42 42 H 1.08005 * 119.92336 * 180.02562 * 19 18 4 43 43 H 1.09000 * 109.47126 * 240.00138 * 21 20 19 44 44 H 0.96702 * 114.00197 * 300.00330 * 22 21 20 45 45 H 1.48502 * 109.99833 * 58.68417 * 23 21 20 46 46 H 1.48501 * 110.00253 * 180.02562 * 23 21 20 47 47 H 1.08001 * 120.00079 * 179.74383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1476 0.0005 6 6 5.6002 0.3006 0.0005 7 6 6.2519 -1.0582 0.0010 8 8 5.5669 -2.0591 0.0009 9 7 7.5957 -1.1613 0.0006 10 6 8.2290 -2.4823 0.0006 11 1 7.6468 -3.2308 0.5379 12 6 8.6935 -2.9428 -1.3911 13 6 10.0295 -2.2433 -1.0902 14 6 10.0589 -0.7719 -1.5089 15 6 11.2541 -3.0230 -1.5733 16 8 11.4658 -2.7645 -2.9628 17 6 9.7138 -2.4536 0.4000 18 6 4.0603 2.5233 0.0011 19 6 3.3029 3.6798 0.0005 20 6 1.9224 3.6057 -0.0011 21 6 1.1017 4.8696 -0.0022 22 8 0.2786 4.9021 -1.1699 23 14 2.2365 6.3470 -0.0004 24 6 1.2932 2.3748 0.0036 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 5.9066 0.8504 -0.8894 29 1 5.9065 0.8504 0.8905 30 1 8.1434 -0.3607 0.0003 31 1 8.7792 -4.0252 -1.4869 32 1 8.1368 -2.4872 -2.2102 33 1 10.7275 -0.2196 -0.8486 34 1 10.4160 -0.6934 -2.5358 35 1 9.0544 -0.3546 -1.4407 36 1 12.1312 -2.7089 -1.0075 37 1 11.0879 -4.0898 -1.4234 38 1 12.2275 -3.2278 -3.3373 39 1 9.9808 -1.6029 1.0272 40 1 10.0780 -3.4018 0.7953 41 1 5.1386 2.5840 0.0011 42 1 3.7909 4.6434 0.0005 43 1 0.4718 4.8946 0.8870 44 1 0.7734 4.8824 -2.0006 45 1 3.1230 6.3081 -1.1912 46 1 1.4393 7.5999 -0.0009 47 1 0.2146 2.3197 0.0065 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17058578_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:41:56 Heat of formation + Delta-G solvation = -120.423048 kcal Electronic energy + Delta-G solvation = -29364.691460 eV Core-core repulsion = 25095.692899 eV Total energy + Delta-G solvation = -4268.998561 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91143 -41.55527 -40.11903 -39.05224 -38.83726 -37.32105 -36.97611 -34.50742 -32.06517 -31.46834 -30.79861 -29.34534 -28.41478 -27.57603 -26.89099 -26.20429 -23.88353 -22.91971 -22.40377 -21.57599 -19.79457 -19.69220 -18.56305 -18.38482 -18.31478 -17.93134 -17.53444 -17.21639 -16.90765 -16.60796 -16.17571 -16.13111 -16.05558 -15.81458 -15.76912 -15.36688 -15.25820 -14.76168 -14.52363 -14.32431 -14.23510 -13.74764 -13.72893 -13.52104 -13.49543 -13.35086 -13.06487 -12.61058 -12.54004 -12.45547 -12.16936 -12.14313 -11.99136 -11.92983 -11.65609 -11.50955 -11.34991 -10.90574 -10.81020 -10.63419 -10.06994 -9.77256 -8.84614 -4.98273 0.18313 0.30663 1.26231 1.43798 1.52213 1.57846 1.94419 2.33071 2.53230 2.57557 3.03280 3.33367 3.34114 3.45486 3.48157 3.62578 3.70563 3.77634 3.80687 3.90337 3.93471 3.94965 4.09340 4.13246 4.26833 4.30252 4.35360 4.39071 4.41728 4.46000 4.53288 4.58130 4.61526 4.66319 4.70241 4.77200 4.83365 4.93460 5.00858 5.05299 5.09961 5.10975 5.27061 5.37368 5.53592 5.57180 5.97689 6.33993 6.38174 6.55904 6.62825 7.13450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.107 3.893 4 C 0.105 3.895 5 O -0.276 6.276 6 C 0.039 3.961 7 C 0.517 3.483 8 O -0.506 6.506 9 N -0.712 5.712 10 C 0.124 3.876 11 H 0.103 0.897 12 C -0.138 4.138 13 C -0.085 4.085 14 C -0.134 4.134 15 C 0.090 3.910 16 O -0.570 6.570 17 C -0.134 4.134 18 C -0.170 4.170 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.073 4.073 22 O -0.530 6.530 23 Si 0.686 3.314 24 C -0.146 4.146 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.403 0.597 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.380 0.620 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.376 0.624 45 H -0.259 1.259 46 H -0.257 1.257 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 2.343 2.292 6.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.061 3.939 4 C 0.059 3.941 5 O -0.189 6.189 6 C -0.040 4.040 7 C 0.301 3.699 8 O -0.379 6.379 9 N -0.368 5.368 10 C 0.019 3.981 11 H 0.121 0.879 12 C -0.176 4.176 13 C -0.085 4.085 14 C -0.191 4.191 15 C 0.012 3.988 16 O -0.376 6.376 17 C -0.172 4.172 18 C -0.188 4.188 19 C -0.131 4.131 20 C -0.114 4.114 21 C -0.182 4.182 22 O -0.337 6.337 23 Si 0.587 3.413 24 C -0.165 4.165 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.240 0.760 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.227 0.773 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.224 0.776 45 H -0.184 1.184 46 H -0.183 1.183 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.665 2.322 2.413 5.742 hybrid contribution 0.453 -0.136 -1.157 1.250 sum 5.118 2.186 1.256 5.705 Atomic orbital electron populations 1.23130 0.78123 1.04400 1.01361 1.86253 1.21328 1.25329 1.88537 1.18285 0.89016 0.85575 1.01041 1.18286 0.88312 0.85773 1.01736 1.86280 1.16010 1.27736 1.88828 1.22476 0.81326 0.96253 1.03991 1.20035 0.82414 0.90576 0.76868 1.90799 1.62594 1.37981 1.46530 1.45761 1.05778 1.09068 1.76172 1.21789 0.93365 0.85048 0.97911 0.87863 1.23506 0.95558 1.01046 0.97507 1.21933 0.94468 0.96699 0.95411 1.21686 1.01493 0.92929 1.03006 1.22110 0.96652 0.97803 0.82187 1.86474 1.53493 1.73568 1.24045 1.23413 0.94499 1.03708 0.95588 1.20990 1.00466 0.90671 1.06723 1.20683 0.92844 0.97879 1.01657 1.19981 0.93704 0.95091 1.02666 1.25007 1.00252 1.01811 0.91158 1.86592 1.35619 1.95714 1.15740 0.95002 0.80364 0.76372 0.89552 1.20934 1.00400 0.90389 1.04784 0.87877 0.92507 0.92539 0.88833 0.88681 0.75985 0.88974 0.90695 0.92267 0.90724 0.92396 0.93538 0.93361 0.77314 0.90235 0.88180 0.84301 0.85004 0.86383 0.77596 1.18423 1.18258 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.38 10.28 -34.24 -0.35 -1.73 16 3 C 0.11 0.37 6.70 -39.12 -0.26 0.11 16 4 C 0.10 0.30 6.70 -39.12 -0.26 0.04 16 5 O -0.28 -1.15 9.45 -47.36 -0.45 -1.60 16 6 C 0.04 -0.01 5.22 36.01 0.19 0.18 16 7 C 0.52 1.09 7.91 -10.99 -0.09 1.00 16 8 O -0.51 -3.70 16.22 -14.36 -0.23 -3.93 16 9 N -0.71 0.72 4.47 -53.02 -0.24 0.48 16 10 C 0.12 -0.05 4.20 -67.12 -0.28 -0.33 16 11 H 0.10 0.12 7.68 -51.93 -0.40 -0.28 16 12 C -0.14 -0.01 6.98 -25.92 -0.18 -0.19 16 13 C -0.08 0.12 1.19 -153.70 -0.18 -0.06 16 14 C -0.13 0.22 8.63 37.16 0.32 0.54 16 15 C 0.09 -0.13 6.52 37.16 0.24 0.11 16 16 O -0.57 0.07 12.54 -35.23 -0.44 -0.38 16 17 C -0.13 0.34 6.97 -25.92 -0.18 0.16 16 18 C -0.17 0.03 9.04 -39.46 -0.36 -0.33 16 19 C -0.11 0.06 8.66 -39.57 -0.34 -0.28 16 20 C -0.11 -0.05 5.39 -104.62 -0.56 -0.61 16 21 C -0.07 0.02 2.82 36.00 0.10 0.12 16 22 O -0.53 -0.61 12.77 -35.23 -0.45 -1.06 16 23 Si 0.69 -0.88 29.78 -169.99 -5.06 -5.94 16 24 C -0.15 -0.24 8.60 -39.46 -0.34 -0.58 16 25 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 27 H 0.06 -0.02 7.67 -51.93 -0.40 -0.42 16 28 H 0.09 -0.28 7.66 -51.93 -0.40 -0.67 16 29 H 0.10 -0.32 7.66 -51.93 -0.40 -0.71 16 30 H 0.40 -1.55 6.52 -40.82 -0.27 -1.82 16 31 H 0.09 -0.02 7.97 -51.93 -0.41 -0.43 16 32 H 0.07 0.13 8.10 -51.93 -0.42 -0.29 16 33 H 0.06 -0.15 8.14 -51.93 -0.42 -0.58 16 34 H 0.07 0.02 7.14 -51.93 -0.37 -0.35 16 35 H 0.06 -0.14 5.30 -51.93 -0.28 -0.42 16 36 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.05 -0.10 7.95 -51.93 -0.41 -0.51 16 38 H 0.38 -1.51 9.12 45.56 0.42 -1.10 16 39 H 0.08 -0.27 8.10 -51.93 -0.42 -0.69 16 40 H 0.10 -0.33 8.10 -51.93 -0.42 -0.75 16 41 H 0.14 -0.46 6.30 -52.49 -0.33 -0.79 16 42 H 0.13 -0.36 4.87 -52.48 -0.26 -0.61 16 43 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 44 H 0.38 -0.58 8.70 45.56 0.40 -0.19 16 45 H -0.26 -0.14 7.11 56.52 0.40 0.26 16 46 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 47 H 0.14 0.09 6.30 -52.49 -0.33 -0.24 16 LS Contribution 380.25 15.07 5.73 5.73 Total: 0.00 -11.63 380.25 -8.66 -20.29 By element: Atomic # 1 Polarization: -6.77 SS G_CDS: -5.97 Total: -12.75 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.20 Total: 0.88 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -0.24 Total: 0.48 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -1.92 Total: -8.69 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.06 Total: -5.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -11.63 -8.66 -20.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.133 kcal (2) G-P(sol) polarization free energy of solvation -11.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds