Wall clock time and date at job start Sun Mar 7 2021 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36000 * 116.99907 * 2 1 4 4 C 1.39155 * 120.06894 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.07337 * 0.02860 * 4 3 2 6 6 C 1.42894 * 116.99463 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47045 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99813 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00482 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00107 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.85026 * 327.67940 * 10 9 7 12 12 C 1.53777 * 113.61579 * 98.99243 * 10 9 7 13 13 C 1.53783 * 87.08285 * 89.11351 * 12 10 9 14 14 C 1.53004 * 113.61323 * 270.88318 * 13 12 10 15 15 C 1.52996 * 113.68835 * 139.99714 * 13 12 10 16 16 O 1.42904 * 109.47723 * 82.46462 * 15 13 12 17 17 C 1.53778 * 87.07803 * 25.43473 * 13 12 10 18 18 C 1.38564 * 119.85058 * 180.02562 * 4 3 2 19 19 C 1.38242 * 119.99907 * 359.97438 * 18 4 3 20 20 C 1.38252 * 120.14801 * 359.97438 * 19 18 4 21 21 C 1.50697 * 119.92716 * 180.02562 * 20 19 18 22 22 O 1.42896 * 109.47530 * 119.99911 * 21 20 19 23 23 Si 1.86303 * 109.47179 * 359.97438 * 21 20 19 24 24 C 1.38240 * 120.14648 * 0.27380 * 20 19 18 25 25 H 1.08993 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47263 * 300.00363 * 1 2 3 27 27 H 1.09006 * 109.46638 * 59.99879 * 1 2 3 28 28 H 1.08996 * 109.47775 * 299.99483 * 6 5 4 29 29 H 1.09001 * 109.47567 * 59.99800 * 6 5 4 30 30 H 0.97001 * 119.99636 * 0.02562 * 9 7 6 31 31 H 1.09000 * 113.61612 * 203.66131 * 12 10 9 32 32 H 1.09005 * 113.61676 * 334.56429 * 12 10 9 33 33 H 1.08998 * 109.46840 * 150.03502 * 14 13 12 34 34 H 1.08999 * 109.47450 * 270.03408 * 14 13 12 35 35 H 1.08995 * 109.47070 * 30.03324 * 14 13 12 36 36 H 1.09005 * 109.46748 * 202.46559 * 15 13 12 37 37 H 1.09003 * 109.47151 * 322.46078 * 15 13 12 38 38 H 0.96698 * 113.99685 * 180.02562 * 16 15 13 39 39 H 1.09007 * 113.60899 * 220.01917 * 17 13 12 40 40 H 1.08998 * 113.69188 * 89.12867 * 17 13 12 41 41 H 1.07998 * 120.00099 * 180.02562 * 18 4 3 42 42 H 1.08005 * 119.92336 * 180.02562 * 19 18 4 43 43 H 1.09000 * 109.47126 * 240.00138 * 21 20 19 44 44 H 0.96702 * 114.00197 * 300.00330 * 22 21 20 45 45 H 1.48502 * 109.99833 * 58.68417 * 23 21 20 46 46 H 1.48501 * 110.00253 * 180.02562 * 23 21 20 47 47 H 1.08001 * 120.00079 * 179.74383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1476 0.0005 6 6 5.6002 0.3006 0.0005 7 6 6.2519 -1.0582 0.0010 8 8 5.5669 -2.0591 0.0009 9 7 7.5957 -1.1613 0.0006 10 6 8.2290 -2.4823 0.0006 11 1 7.6468 -3.2308 0.5379 12 6 8.6935 -2.9428 -1.3911 13 6 10.0295 -2.2433 -1.0902 14 6 10.0589 -0.7719 -1.5089 15 6 11.2541 -3.0230 -1.5733 16 8 11.4658 -2.7645 -2.9628 17 6 9.7138 -2.4536 0.4000 18 6 4.0603 2.5233 0.0011 19 6 3.3029 3.6798 0.0005 20 6 1.9224 3.6057 -0.0011 21 6 1.1017 4.8696 -0.0022 22 8 0.2786 4.9021 -1.1699 23 14 2.2365 6.3470 -0.0004 24 6 1.2932 2.3748 0.0036 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 5.9066 0.8504 -0.8894 29 1 5.9065 0.8504 0.8905 30 1 8.1434 -0.3607 0.0003 31 1 8.7792 -4.0252 -1.4869 32 1 8.1368 -2.4872 -2.2102 33 1 10.7275 -0.2196 -0.8486 34 1 10.4160 -0.6934 -2.5358 35 1 9.0544 -0.3546 -1.4407 36 1 12.1312 -2.7089 -1.0075 37 1 11.0879 -4.0898 -1.4234 38 1 12.2275 -3.2278 -3.3373 39 1 9.9808 -1.6029 1.0272 40 1 10.0780 -3.4018 0.7953 41 1 5.1386 2.5840 0.0011 42 1 3.7909 4.6434 0.0005 43 1 0.4718 4.8946 0.8870 44 1 0.7734 4.8824 -2.0006 45 1 3.1230 6.3081 -1.1912 46 1 1.4393 7.5999 -0.0009 47 1 0.2146 2.3197 0.0065 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:41:55 Heat of formation + Delta-G solvation = -125.566428 kcal Electronic energy + Delta-G solvation = -29364.914494 eV Core-core repulsion = 25095.692899 eV Total energy + Delta-G solvation = -4269.221595 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94584 -41.56503 -40.18996 -39.17489 -38.89317 -37.26150 -37.01612 -34.59389 -32.08367 -31.48065 -30.74332 -29.31212 -28.45727 -27.45547 -26.80774 -26.20007 -23.88665 -22.92555 -22.41081 -21.65207 -19.83379 -19.61206 -18.58855 -18.42924 -18.23277 -17.98134 -17.56716 -17.28418 -16.92038 -16.69021 -16.16738 -16.11368 -16.00074 -15.81973 -15.76662 -15.39300 -15.32516 -14.75784 -14.41912 -14.32444 -14.23727 -13.80284 -13.68653 -13.53258 -13.47016 -13.24532 -13.00237 -12.61719 -12.58609 -12.38788 -12.18575 -12.16880 -12.00534 -11.80965 -11.65078 -11.44429 -11.27054 -11.01182 -10.76124 -10.62621 -10.11252 -9.78904 -8.92753 -4.88531 0.16026 0.27312 1.33504 1.40885 1.44856 1.64379 1.99919 2.30253 2.54031 2.55078 3.18958 3.39524 3.44187 3.48366 3.61949 3.65107 3.77510 3.85307 3.89492 4.02697 4.04428 4.09318 4.13482 4.21454 4.27758 4.29716 4.35595 4.49308 4.56855 4.57788 4.61216 4.64665 4.65209 4.73822 4.79870 4.90251 4.92373 5.00214 5.02136 5.10008 5.12006 5.19570 5.35464 5.36186 5.58002 5.60604 5.95482 6.37076 6.48692 6.52426 6.90716 7.10103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.314 6.314 6 C 0.035 3.965 7 C 0.512 3.488 8 O -0.571 6.571 9 N -0.692 5.692 10 C 0.116 3.884 11 H 0.082 0.918 12 C -0.144 4.144 13 C -0.084 4.084 14 C -0.133 4.133 15 C 0.086 3.914 16 O -0.593 6.593 17 C -0.116 4.116 18 C -0.160 4.160 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.085 4.085 22 O -0.551 6.551 23 Si 0.777 3.223 24 C -0.151 4.151 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.420 0.580 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.394 0.606 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.176 0.824 42 H 0.160 0.840 43 H 0.123 0.877 44 H 0.386 0.614 45 H -0.276 1.276 46 H -0.307 1.307 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.022 4.229 3.022 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.228 6.228 6 C -0.043 4.043 7 C 0.299 3.701 8 O -0.449 6.449 9 N -0.349 5.349 10 C 0.011 3.989 11 H 0.100 0.900 12 C -0.183 4.183 13 C -0.084 4.084 14 C -0.190 4.190 15 C 0.009 3.991 16 O -0.401 6.401 17 C -0.154 4.154 18 C -0.178 4.178 19 C -0.127 4.127 20 C -0.117 4.117 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.682 3.318 24 C -0.170 4.170 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.149 0.851 30 H 0.260 0.740 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.243 0.757 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.193 0.807 42 H 0.177 0.823 43 H 0.141 0.859 44 H 0.235 0.765 45 H -0.202 1.202 46 H -0.236 1.236 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.808 4.211 3.141 8.600 hybrid contribution -0.212 -0.705 -1.433 1.611 sum 6.596 3.506 1.709 7.663 Atomic orbital electron populations 1.23280 0.76824 1.05177 1.02099 1.86193 1.22989 1.26651 1.89098 1.18680 0.89907 0.85639 1.02722 1.18602 0.88201 0.86524 1.02765 1.86223 1.18123 1.29124 1.89309 1.22769 0.79449 0.94999 1.07077 1.20625 0.82962 0.90954 0.75602 1.90771 1.64091 1.40197 1.49839 1.45637 1.05067 1.09656 1.74513 1.21819 0.94560 0.84962 0.97596 0.90030 1.23532 0.96797 1.01031 0.96938 1.21951 0.93509 0.96764 0.96142 1.21680 1.02210 0.92928 1.02199 1.22200 0.97008 0.98085 0.81816 1.86437 1.54596 1.74171 1.24892 1.23353 0.91950 1.05072 0.95037 1.21381 1.02273 0.89314 1.04841 1.21010 0.92394 0.98992 1.00267 1.20133 0.94459 0.94707 1.02365 1.25320 1.00727 1.02297 0.90973 1.86564 1.36804 1.95819 1.16682 0.94010 0.78004 0.72267 0.87524 1.21005 1.00508 0.90514 1.04994 0.87136 0.91547 0.91968 0.85757 0.85058 0.73962 0.89275 0.92909 0.90523 0.92701 0.91744 0.92185 0.92980 0.75669 0.88383 0.87130 0.80703 0.82347 0.85935 0.76470 1.20197 1.23570 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.33 -3.93 10.28 -79.68 -0.82 -4.75 16 3 C 0.08 0.65 6.70 22.57 0.15 0.80 16 4 C 0.08 0.51 6.70 22.57 0.15 0.66 16 5 O -0.31 -2.94 9.45 -67.10 -0.63 -3.57 16 6 C 0.03 -0.05 5.22 71.24 0.37 0.32 16 7 C 0.51 2.56 7.91 87.66 0.69 3.25 16 8 O -0.57 -9.95 16.22 16.00 0.26 -9.69 16 9 N -0.69 1.55 4.47 -440.05 -1.97 -0.41 16 10 C 0.12 -0.03 4.20 45.52 0.19 0.16 16 11 H 0.08 0.36 7.68 -2.39 -0.02 0.34 16 12 C -0.14 -0.18 6.98 31.12 0.22 0.03 16 13 C -0.08 0.28 1.19 -51.66 -0.06 0.21 16 14 C -0.13 0.57 8.63 71.98 0.62 1.19 16 15 C 0.09 -0.30 6.52 71.98 0.47 0.16 16 16 O -0.59 0.14 12.54 -148.98 -1.87 -1.73 16 17 C -0.12 0.73 6.97 31.12 0.22 0.95 16 18 C -0.16 0.35 9.04 22.35 0.20 0.56 16 19 C -0.11 0.34 8.66 22.27 0.19 0.53 16 20 C -0.12 -0.03 5.39 -19.86 -0.11 -0.13 16 21 C -0.09 0.11 2.82 71.23 0.20 0.31 16 22 O -0.55 -1.26 12.77 -148.98 -1.90 -3.16 16 23 Si 0.78 -3.04 29.78 68.60 2.04 -0.99 16 24 C -0.15 -0.62 8.60 22.35 0.19 -0.43 16 25 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.07 0.02 7.66 -2.39 -0.02 0.00 16 27 H 0.06 0.07 7.67 -2.38 -0.02 0.05 16 28 H 0.12 -1.00 7.66 -2.39 -0.02 -1.02 16 29 H 0.13 -1.21 7.66 -2.39 -0.02 -1.23 16 30 H 0.42 -3.96 6.52 -92.71 -0.60 -4.56 16 31 H 0.09 0.12 7.97 -2.39 -0.02 0.10 16 32 H 0.05 0.29 8.10 -2.38 -0.02 0.27 16 33 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.05 0.02 7.14 -2.39 -0.02 0.01 16 35 H 0.06 -0.39 5.30 -2.39 -0.01 -0.41 16 36 H 0.06 -0.37 8.14 -2.38 -0.02 -0.39 16 37 H 0.05 -0.24 7.95 -2.39 -0.02 -0.25 16 38 H 0.39 -3.16 9.12 -74.06 -0.68 -3.83 16 39 H 0.10 -0.93 8.10 -2.38 -0.02 -0.95 16 40 H 0.11 -0.88 8.10 -2.39 -0.02 -0.90 16 41 H 0.18 -1.83 6.30 -2.91 -0.02 -1.85 16 42 H 0.16 -1.39 4.87 -2.91 -0.01 -1.41 16 43 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 44 H 0.39 -1.23 8.70 -74.06 -0.64 -1.87 16 45 H -0.28 0.29 7.11 99.48 0.71 1.00 16 46 H -0.31 -1.39 7.11 99.48 0.71 -0.68 16 47 H 0.14 0.38 6.30 -2.91 -0.02 0.37 16 Total: 0.00 -31.73 380.25 -0.93 -32.66 By element: Atomic # 1 Polarization: -17.24 SS G_CDS: -0.86 Total: -18.10 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.82 Total: 9.75 kcal Atomic # 7 Polarization: 1.55 SS G_CDS: -1.97 Total: -0.41 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -4.97 Total: -22.90 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.04 Total: -0.99 kcal Total: -31.73 -0.93 -32.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.910 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds