Wall clock time and date at job start Sun Mar 7 2021 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.85100 * 2 1 4 4 O 1.42901 * 109.47069 * 311.19540 * 3 2 1 5 5 C 1.53787 * 113.60890 * 131.19371 * 2 1 3 6 6 C 1.53784 * 87.07923 * 139.98364 * 5 2 1 7 7 H 1.09002 * 113.61478 * 89.11632 * 6 5 2 8 8 N 1.46497 * 113.61569 * 220.01663 * 6 5 2 9 9 C 1.34769 * 120.00274 * 204.99925 * 8 6 5 10 10 O 1.21283 * 120.00052 * 0.02562 * 9 8 6 11 11 C 1.50706 * 119.99945 * 179.97438 * 9 8 6 12 12 O 1.42906 * 109.47092 * 179.97438 * 11 9 8 13 13 C 1.35912 * 116.99884 * 180.02562 * 12 11 9 14 14 C 1.38795 * 120.05357 * 179.72781 * 13 12 11 15 15 Br 1.89102 * 120.03838 * 0.02562 * 14 13 12 16 16 C 1.38236 * 119.92101 * 179.77238 * 14 13 12 17 17 C 1.38239 * 120.04994 * 0.47904 * 16 14 13 18 18 C 1.50703 * 119.94465 * 179.77264 * 17 16 14 19 19 O 1.42901 * 109.47201 * 245.02485 * 18 17 16 20 20 Si 1.86304 * 109.46896 * 5.02000 * 18 17 16 21 21 C 1.38283 * 120.11610 * 359.79193 * 17 16 14 22 22 C 1.38141 * 120.07241 * 359.95527 * 21 17 16 23 23 C 1.53779 * 87.08045 * 334.56667 * 6 5 2 24 24 H 1.08994 * 109.47401 * 288.80672 * 1 2 3 25 25 H 1.09006 * 109.46633 * 48.80711 * 1 2 3 26 26 H 1.09005 * 109.47442 * 168.79997 * 1 2 3 27 27 H 1.09005 * 109.46827 * 71.19060 * 3 2 1 28 28 H 1.08994 * 109.46980 * 191.19023 * 3 2 1 29 29 H 0.96703 * 113.99793 * 180.02562 * 4 3 2 30 30 H 1.09004 * 113.61202 * 254.53117 * 5 2 1 31 31 H 1.08994 * 113.61447 * 25.43549 * 5 2 1 32 32 H 0.97009 * 119.99534 * 24.99936 * 8 6 5 33 33 H 1.08991 * 109.47537 * 300.00273 * 11 9 8 34 34 H 1.09001 * 109.47014 * 60.00675 * 11 9 8 35 35 H 1.08011 * 119.97415 * 180.23080 * 16 14 13 36 36 H 1.08990 * 109.47604 * 125.02364 * 18 17 16 37 37 H 0.96697 * 114.00114 * 179.97438 * 19 18 17 38 38 H 1.48501 * 109.99973 * 300.00244 * 20 18 17 39 39 H 1.48498 * 109.99950 * 61.32360 * 20 18 17 40 40 H 1.08001 * 119.96606 * 179.97438 * 21 17 16 41 41 H 1.08001 * 120.02381 * 180.02562 * 22 21 17 42 42 H 1.09006 * 113.61307 * 270.88660 * 23 6 5 43 43 H 1.08999 * 113.69146 * 139.99146 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 8 1.4914 2.1934 -1.0138 5 6 2.1459 -0.9281 1.0604 6 6 3.1923 -1.3137 0.0014 7 1 4.0711 -0.6688 0.0009 8 7 3.5310 -2.7389 0.0029 9 6 4.7262 -3.1480 -0.4667 10 8 5.5216 -2.3362 -0.8900 11 6 5.0748 -4.6142 -0.4647 12 8 6.3845 -4.7932 -1.0077 13 6 6.8545 -6.0665 -1.0782 14 6 8.1167 -6.3137 -1.6001 15 35 9.1850 -4.8789 -2.2133 16 6 8.5938 -7.6094 -1.6662 17 6 7.8112 -8.6588 -1.2223 18 6 8.3317 -10.0709 -1.3002 19 8 7.5320 -10.8237 -2.2144 20 14 10.0981 -10.0498 -1.8922 21 6 6.5512 -8.4152 -0.7072 22 6 6.0715 -7.1218 -0.6340 23 6 2.1461 -0.9302 -1.0583 24 1 -0.3634 0.3313 0.9727 25 1 -0.3633 0.6769 -0.7734 26 1 -0.3634 -1.0081 -0.1996 27 1 1.9599 1.8734 0.9728 28 1 3.1942 1.3532 -0.1994 29 1 1.8197 3.1012 -1.0715 30 1 2.5649 -0.3970 1.9151 31 1 1.4944 -1.7522 1.3507 32 1 2.8950 -3.3882 0.3418 33 1 5.0501 -4.9922 0.5573 34 1 4.3526 -5.1602 -1.0717 35 1 9.5774 -7.8023 -2.0687 36 1 8.2849 -10.5305 -0.3130 37 1 7.8105 -11.7442 -2.3150 38 1 10.1754 -9.4256 -3.2375 39 1 10.9461 -9.2970 -0.9334 40 1 5.9416 -9.2369 -0.3615 41 1 5.0874 -6.9324 -0.2312 42 1 1.4945 -1.7550 -1.3471 43 1 2.5638 -0.4008 -1.9147 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_6201210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:41:58 Heat of formation + Delta-G solvation = -93.156597 kcal Electronic energy + Delta-G solvation = -26709.058240 eV Core-core repulsion = 22575.643850 eV Total energy + Delta-G solvation = -4133.414391 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.061 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86176 -41.34358 -40.11449 -39.01510 -37.31273 -37.18238 -34.93930 -33.66642 -32.35310 -31.06990 -30.40409 -29.18049 -27.39078 -26.80011 -26.35580 -24.39117 -23.11901 -22.28206 -21.74034 -19.67531 -19.51208 -18.53929 -18.37669 -18.27109 -17.61097 -17.49493 -17.12855 -16.74424 -16.33245 -16.15035 -15.93146 -15.63723 -15.35106 -15.05095 -14.60146 -14.50217 -14.36043 -14.22642 -14.06786 -13.88326 -13.74715 -13.62241 -13.24264 -13.04089 -12.70985 -12.56381 -12.32919 -12.23371 -12.15524 -11.88790 -11.84232 -11.52763 -11.38028 -11.30675 -11.03818 -10.82874 -10.31610 -10.15777 -10.15091 -9.42940 -5.01185 -0.18495 -0.05531 0.45983 1.27449 1.33678 1.37947 1.59060 1.94973 2.25649 2.44006 3.09887 3.26837 3.35358 3.42629 3.56854 3.58918 3.71259 3.75166 3.79480 3.95808 3.97398 3.99397 4.02091 4.17565 4.19283 4.30565 4.37545 4.50467 4.56990 4.58870 4.67159 4.71973 4.78313 4.82463 4.86524 4.91925 5.01588 5.13173 5.17878 5.21725 5.33060 5.40126 5.48858 5.95748 6.41026 6.82475 6.92562 7.08935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C 0.091 3.909 4 O -0.590 6.590 5 C -0.115 4.115 6 C 0.118 3.882 7 H 0.091 0.909 8 N -0.697 5.697 9 C 0.512 3.488 10 O -0.571 6.571 11 C 0.032 3.968 12 O -0.305 6.305 13 C 0.151 3.849 14 C -0.143 4.143 15 Br -0.051 7.051 16 C -0.076 4.076 17 C -0.120 4.120 18 C -0.059 4.059 19 O -0.560 6.560 20 Si 0.751 3.249 21 C -0.028 4.028 22 C -0.190 4.190 23 C -0.140 4.140 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.395 0.605 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.423 0.577 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.406 0.594 38 H -0.302 1.302 39 H -0.291 1.291 40 H 0.169 0.831 41 H 0.183 0.817 42 H 0.099 0.901 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 -7.693 6.764 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C 0.014 3.986 4 O -0.398 6.398 5 C -0.153 4.153 6 C 0.013 3.987 7 H 0.109 0.891 8 N -0.351 5.351 9 C 0.298 3.702 10 O -0.449 6.449 11 C -0.046 4.046 12 O -0.217 6.217 13 C 0.103 3.897 14 C -0.223 4.223 15 Br 0.034 6.966 16 C -0.095 4.095 17 C -0.121 4.121 18 C -0.170 4.170 19 O -0.371 6.371 20 Si 0.659 3.341 21 C -0.046 4.046 22 C -0.209 4.209 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.245 0.755 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.262 0.738 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.257 0.743 38 H -0.230 1.230 39 H -0.219 1.219 40 H 0.187 0.813 41 H 0.200 0.800 42 H 0.117 0.883 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.032 -5.899 5.786 9.674 hybrid contribution -0.067 0.795 0.114 0.806 sum -5.099 -5.104 5.900 9.320 Atomic orbital electron populations 1.21559 0.92678 1.02138 1.02025 1.21619 0.96744 0.92841 0.97415 1.22018 0.94988 0.90560 0.91064 1.86419 1.66471 1.28909 1.57973 1.23412 0.96272 0.99492 0.96165 1.22536 0.96707 0.81502 0.97922 0.89083 1.45650 1.16716 1.09075 1.63644 1.20551 0.82090 0.90455 0.77126 1.90784 1.50527 1.56526 1.47074 1.22900 0.83924 0.94158 1.03570 1.86243 1.33304 1.23733 1.78431 1.18747 0.91730 0.84609 0.94642 1.21082 0.95826 0.93433 1.12007 1.96742 1.67476 1.44536 1.87840 1.20767 0.99503 0.90853 0.98401 1.19614 0.96276 0.93858 1.02388 1.24466 1.04883 0.89469 0.98179 1.86432 1.57510 1.28772 1.64338 0.94700 0.74795 0.88292 0.76322 1.21330 0.93402 0.97150 0.92759 1.21723 1.02287 0.91403 1.05480 1.23573 0.97833 0.99487 0.97006 0.91887 0.93330 0.91483 0.91918 0.93793 0.75494 0.89621 0.86394 0.73841 0.84778 0.85188 0.86088 0.87303 0.74285 1.23021 1.21858 0.81312 0.80029 0.88280 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.22 9.08 71.98 0.65 0.88 16 2 C -0.09 0.16 1.19 -51.65 -0.06 0.10 16 3 C 0.09 -0.04 6.40 71.98 0.46 0.42 16 4 O -0.59 -1.29 12.64 -148.98 -1.88 -3.17 16 5 C -0.12 0.71 6.98 31.12 0.22 0.93 16 6 C 0.12 -0.13 3.89 45.52 0.18 0.05 16 7 H 0.09 0.43 6.98 -2.39 -0.02 0.41 16 8 N -0.70 2.89 5.35 -440.04 -2.36 0.54 16 9 C 0.51 1.64 7.91 87.66 0.69 2.34 16 10 O -0.57 -8.97 16.10 16.00 0.26 -8.72 16 11 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 12 O -0.30 -2.21 9.01 -73.53 -0.66 -2.87 16 13 C 0.15 0.85 6.68 22.52 0.15 1.00 16 14 C -0.14 -1.44 6.24 22.40 0.14 -1.31 16 15 Br -0.05 -0.67 33.16 -20.37 -0.68 -1.35 16 16 C -0.08 -0.61 8.40 22.27 0.19 -0.42 16 17 C -0.12 -0.33 5.38 -19.85 -0.11 -0.44 16 18 C -0.06 0.17 2.79 71.24 0.20 0.37 16 19 O -0.56 1.83 12.81 -148.98 -1.91 -0.08 16 20 Si 0.75 -0.82 29.85 68.60 2.05 1.22 16 21 C -0.03 0.05 9.68 22.26 0.22 0.27 16 22 C -0.19 0.42 9.04 22.36 0.20 0.62 16 23 C -0.14 -0.02 6.99 31.12 0.22 0.20 16 24 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.05 0.14 7.32 -2.38 -0.02 0.12 16 26 H 0.07 -0.28 7.94 -2.38 -0.02 -0.30 16 27 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 28 H 0.04 0.01 7.35 -2.39 -0.02 -0.01 16 29 H 0.40 -2.22 9.12 -74.06 -0.68 -2.89 16 30 H 0.09 -0.58 8.10 -2.39 -0.02 -0.60 16 31 H 0.12 -1.25 8.08 -2.39 -0.02 -1.27 16 32 H 0.42 -5.32 8.73 -92.70 -0.81 -6.13 16 33 H 0.13 -1.46 7.66 -2.39 -0.02 -1.48 16 34 H 0.13 -1.31 7.66 -2.39 -0.02 -1.32 16 35 H 0.12 1.12 4.86 -2.91 -0.01 1.10 16 36 H 0.11 -0.94 7.96 -2.39 -0.02 -0.96 16 37 H 0.41 -5.47 8.74 -74.06 -0.65 -6.12 16 38 H -0.30 -2.37 7.05 99.48 0.70 -1.67 16 39 H -0.29 -1.54 7.11 99.48 0.71 -0.83 16 40 H 0.17 -1.30 8.06 -2.91 -0.02 -1.33 16 41 H 0.18 -2.03 6.30 -2.91 -0.02 -2.05 16 42 H 0.10 -0.24 7.96 -2.38 -0.02 -0.25 16 43 H 0.05 0.28 8.10 -2.39 -0.02 0.26 16 Total: 0.00 -32.42 376.14 -2.49 -34.90 By element: Atomic # 1 Polarization: -24.72 SS G_CDS: -1.02 Total: -25.74 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 3.72 Total: 5.26 kcal Atomic # 7 Polarization: 2.89 SS G_CDS: -2.36 Total: 0.54 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -4.20 Total: -14.83 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.05 Total: 1.22 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -0.68 Total: -1.35 kcal Total: -32.42 -2.49 -34.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_6201210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.256 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds