Wall clock time and date at job start Sun Mar 7 2021 09:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86292 * 109.47089 * 2 1 4 4 C 1.86305 * 109.46973 * 240.00271 * 2 1 3 5 5 C 1.86297 * 109.47124 * 120.00472 * 2 1 3 6 6 S 1.81398 * 109.47454 * 59.04469 * 5 2 1 7 7 C 1.81399 * 103.00081 * 184.42332 * 6 5 2 8 8 C 1.53004 * 109.47137 * 175.57695 * 7 6 5 9 9 C 1.52995 * 109.47118 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47323 * 180.02562 * 9 8 7 11 11 C 1.34775 * 120.00353 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99414 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99966 * 179.97438 * 11 10 9 14 14 O 1.42906 * 109.46831 * 180.02562 * 13 11 10 15 15 C 1.35917 * 116.99638 * 179.97438 * 14 13 11 16 16 C 1.38674 * 120.05846 * 0.02562 * 15 14 13 17 17 C 1.38187 * 119.95169 * 179.97438 * 16 15 14 18 18 C 1.38244 * 120.06928 * 0.02562 * 17 16 15 19 19 C 1.50707 * 119.93517 * 179.97438 * 18 17 16 20 20 O 1.42901 * 109.47005 * 299.99870 * 19 18 17 21 21 Si 1.86302 * 109.46551 * 180.02562 * 19 18 17 22 22 H 1.48491 * 109.47398 * 60.00066 * 21 19 18 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47073 * 299.99434 * 21 19 18 25 25 C 1.38282 * 120.11939 * 0.25615 * 18 17 16 26 26 C 1.38188 * 120.04467 * 359.44749 * 25 18 17 27 27 Br 1.89100 * 120.03616 * 180.25388 * 26 25 18 28 28 H 1.08997 * 109.47284 * 299.99896 * 1 2 3 29 29 H 1.08995 * 109.47448 * 60.00008 * 1 2 3 30 30 H 1.09010 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47455 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47416 * 300.00254 * 3 2 1 33 33 H 1.09003 * 109.46979 * 60.00357 * 3 2 1 34 34 H 1.09006 * 109.46788 * 297.55484 * 4 2 1 35 35 H 1.09000 * 109.47398 * 57.55710 * 4 2 1 36 36 H 1.09001 * 109.46964 * 177.55802 * 4 2 1 37 37 H 1.09003 * 109.46928 * 299.04701 * 5 2 1 38 38 H 1.08995 * 109.47088 * 179.05129 * 5 2 1 39 39 H 1.09003 * 109.47119 * 55.57732 * 7 6 5 40 40 H 1.08996 * 109.47369 * 295.57792 * 7 6 5 41 41 H 1.09000 * 109.46592 * 59.99956 * 8 7 6 42 42 H 1.08996 * 109.47070 * 300.00280 * 8 7 6 43 43 H 1.09003 * 109.47172 * 60.00015 * 9 8 7 44 44 H 1.09009 * 109.47614 * 300.00038 * 9 8 7 45 45 H 0.97002 * 119.99433 * 0.02562 * 10 9 8 46 46 H 1.08995 * 109.46903 * 60.00283 * 13 11 10 47 47 H 1.08996 * 109.46989 * 300.00031 * 13 11 10 48 48 H 1.07999 * 120.02337 * 359.95276 * 16 15 14 49 49 H 1.08003 * 119.96704 * 180.02562 * 17 16 15 50 50 H 1.08996 * 109.47027 * 60.00132 * 19 18 17 51 51 H 0.96708 * 113.99478 * 180.02562 * 20 19 18 52 52 H 1.07997 * 119.97514 * 179.72710 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8783 1.5210 6 16 1.8562 -2.5802 1.5353 7 6 2.4434 -3.2184 3.1285 8 6 1.8965 -4.6308 3.3450 9 6 2.3912 -5.1689 4.6890 10 7 1.8680 -6.5216 4.8961 11 6 2.1747 -7.1979 6.0208 12 8 2.8842 -6.6869 6.8612 13 6 1.6359 -8.5891 6.2339 14 8 2.0972 -9.0913 7.4898 15 6 1.6986 -10.3432 7.8378 16 6 0.8811 -11.0731 6.9880 17 6 0.4775 -12.3460 7.3437 18 6 0.8874 -12.8920 8.5458 19 6 0.4450 -14.2803 8.9309 20 8 -0.9817 -14.3236 8.9998 21 14 1.1601 -14.7207 10.5939 22 1 0.6833 -13.7493 11.6108 23 1 0.7247 -16.0889 10.9733 24 1 2.6427 -14.6756 10.5229 25 6 1.6978 -12.1645 9.3979 26 6 2.1093 -10.8936 9.0443 27 35 3.2234 -9.9017 10.2066 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.5739 1.7565 0.0005 32 1 2.1206 2.2703 -0.8899 33 1 2.1206 2.2702 0.8900 34 1 2.1568 -1.9178 -1.4996 35 1 2.0853 -0.3903 -2.4107 36 1 3.5731 -0.8404 -1.5434 37 1 2.1346 -0.3548 2.4110 38 1 3.5738 -0.8931 1.5126 39 1 2.0964 -2.5674 3.9310 40 1 3.5330 -3.2467 3.1293 41 1 2.2436 -5.2817 2.5426 42 1 0.8069 -4.6026 3.3443 43 1 2.0438 -4.5178 5.4912 44 1 3.4810 -5.1971 4.6903 45 1 1.3009 -6.9303 4.2237 46 1 1.9837 -9.2402 5.4320 47 1 0.5463 -8.5610 6.2324 48 1 0.5598 -10.6469 6.0491 49 1 -0.1588 -12.9148 6.6820 50 1 0.7946 -14.9932 8.1843 51 1 -1.3376 -15.1891 9.2436 52 1 2.0131 -12.5917 10.3384 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310320_6201210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:41 Heat of formation + Delta-G solvation = -121.567766 kcal Electronic energy + Delta-G solvation = -29080.044410 eV Core-core repulsion = 24761.950497 eV Total energy + Delta-G solvation = -4318.093913 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 449.065 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68412 -40.66562 -39.08020 -37.30850 -36.89090 -33.93354 -33.51720 -32.25173 -30.62538 -29.98900 -29.80752 -28.77554 -28.33588 -28.29788 -27.05074 -26.14902 -24.04499 -22.83075 -22.28980 -21.61862 -19.57955 -18.62716 -18.30515 -17.61858 -17.50167 -17.12282 -16.84850 -16.77852 -16.51686 -16.21348 -15.64904 -15.52676 -15.18878 -14.80623 -14.78048 -14.61439 -14.50727 -14.41834 -14.13485 -14.09723 -13.94781 -13.83189 -13.74501 -13.71607 -13.52028 -13.25265 -13.11053 -13.08948 -12.98647 -12.53311 -12.51971 -12.31118 -12.21430 -12.08940 -12.05818 -11.87717 -11.75866 -11.31224 -11.26366 -11.09231 -10.77087 -10.73795 -10.61942 -10.33152 -10.26258 -10.01786 -9.30731 -8.57408 -0.05167 0.06666 0.58264 0.65374 1.14954 1.38535 1.42082 1.42130 1.46437 1.52303 1.80621 1.90027 1.95742 2.12515 2.37602 2.49440 2.65187 3.35542 3.46065 3.67446 3.80744 3.83946 3.84711 3.89474 4.00140 4.04178 4.05839 4.06589 4.31564 4.32467 4.34280 4.40786 4.54835 4.65056 4.66626 4.78585 4.78826 4.80826 4.81178 4.86371 4.87072 4.88368 4.95926 4.98317 5.03679 5.05088 5.27081 5.30350 5.45621 5.55907 5.65354 5.67158 6.04130 6.40622 6.84083 7.09118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.081 2.919 3 C -0.452 4.452 4 C -0.461 4.461 5 C -0.387 4.387 6 S -0.270 6.270 7 C -0.090 4.090 8 C -0.103 4.103 9 C 0.128 3.872 10 N -0.709 5.709 11 C 0.511 3.489 12 O -0.570 6.570 13 C 0.034 3.966 14 O -0.305 6.305 15 C 0.148 3.852 16 C -0.193 4.193 17 C -0.029 4.029 18 C -0.116 4.116 19 C -0.061 4.061 20 O -0.559 6.559 21 Si 0.946 3.054 22 H -0.276 1.276 23 H -0.246 1.246 24 H -0.261 1.261 25 C -0.071 4.071 26 C -0.141 4.141 27 Br -0.052 7.052 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.422 0.578 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.178 0.822 49 H 0.165 0.835 50 H 0.110 0.890 51 H 0.400 0.600 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 -2.833 -7.610 9.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.272 2.728 3 C -0.560 4.560 4 C -0.567 4.567 5 C -0.579 4.579 6 S -0.044 6.044 7 C -0.238 4.238 8 C -0.142 4.142 9 C 0.002 3.998 10 N -0.365 5.365 11 C 0.297 3.703 12 O -0.448 6.448 13 C -0.044 4.044 14 O -0.218 6.218 15 C 0.101 3.899 16 C -0.212 4.212 17 C -0.047 4.047 18 C -0.117 4.117 19 C -0.173 4.173 20 O -0.368 6.368 21 Si 0.772 3.228 22 H -0.201 1.201 23 H -0.169 1.169 24 H -0.186 1.186 25 C -0.091 4.091 26 C -0.221 4.221 27 Br 0.033 6.967 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.260 0.740 46 H 0.150 0.850 47 H 0.148 0.852 48 H 0.195 0.805 49 H 0.182 0.818 50 H 0.127 0.873 51 H 0.251 0.749 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.344 -2.093 -6.556 7.652 hybrid contribution 0.341 -0.002 0.679 0.760 sum -3.003 -2.095 -5.877 6.924 Atomic orbital electron populations 1.26256 1.21524 1.04430 1.04393 0.77876 0.65859 0.66015 0.63078 1.26143 1.06555 1.18352 1.04999 1.26270 1.06326 1.08276 1.15861 1.28233 1.09394 0.98996 1.21271 1.86846 1.74667 1.15200 1.27670 1.23356 1.03730 0.99621 0.97140 1.21405 1.02455 0.94182 0.96120 1.21283 0.98848 0.82281 0.97352 1.45629 1.53010 1.16889 1.20923 1.20514 0.80391 0.87622 0.81753 1.90791 1.38660 1.70451 1.44924 1.22844 1.02461 0.92800 0.86291 1.86236 1.69732 1.27745 1.38051 1.18765 0.93969 0.84519 0.92695 1.21665 1.01401 0.96326 1.01817 1.21265 0.94767 0.93844 0.94805 1.19437 0.99887 0.96537 0.95839 1.24407 0.86489 0.96071 1.10344 1.86445 1.17755 1.39396 1.93193 0.85749 0.79646 0.80207 0.77183 1.20103 1.16928 1.18569 1.20877 0.97151 0.91723 0.99339 1.21066 1.07374 0.97313 0.96387 1.96744 1.64828 1.73315 1.61818 0.91240 0.91100 0.91394 0.90891 0.90594 0.90877 0.91497 0.91052 0.91240 0.88031 0.88203 0.89683 0.89780 0.89377 0.89290 0.92098 0.92092 0.73956 0.84965 0.85178 0.80481 0.81776 0.87267 0.74882 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.22 8.65 113.37 0.98 2.20 16 2 Si 1.08 -6.05 12.30 68.60 0.84 -5.21 16 3 C -0.45 2.19 8.65 113.37 0.98 3.17 16 4 C -0.46 1.16 8.65 113.37 0.98 2.14 16 5 C -0.39 1.47 5.14 113.37 0.58 2.05 16 6 S -0.27 0.19 20.84 -56.49 -1.18 -0.99 16 7 C -0.09 0.29 5.94 71.98 0.43 0.72 16 8 C -0.10 0.62 5.34 30.59 0.16 0.78 16 9 C 0.13 -0.33 5.67 86.38 0.49 0.16 16 10 N -0.71 3.28 5.56 -463.05 -2.57 0.71 16 11 C 0.51 1.34 7.91 87.66 0.69 2.03 16 12 O -0.57 -8.50 16.50 16.00 0.26 -8.23 16 13 C 0.03 -0.13 5.22 71.24 0.37 0.24 16 14 O -0.31 -1.91 9.01 -73.59 -0.66 -2.57 16 15 C 0.15 0.65 6.68 22.52 0.15 0.80 16 16 C -0.19 0.58 9.04 22.36 0.20 0.78 16 17 C -0.03 0.08 9.60 22.26 0.21 0.29 16 18 C -0.12 -0.11 5.42 -19.85 -0.11 -0.21 16 19 C -0.06 0.21 2.81 71.24 0.20 0.41 16 20 O -0.56 1.87 12.74 -148.98 -1.90 -0.02 16 21 Si 0.95 -0.61 25.06 68.60 1.72 1.11 16 22 H -0.28 -1.24 7.11 99.48 0.71 -0.54 16 23 H -0.25 0.45 7.11 99.48 0.71 1.16 16 24 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 25 C -0.07 -0.38 8.40 22.27 0.19 -0.19 16 26 C -0.14 -1.13 6.24 22.40 0.14 -0.99 16 27 Br -0.05 -0.58 33.16 -20.37 -0.68 -1.26 16 28 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 -0.06 7.96 -2.38 -0.02 -0.07 16 31 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.37 7.96 -2.39 -0.02 -0.38 16 34 H 0.07 -0.04 7.96 -2.38 -0.02 -0.06 16 35 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 36 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 37 H 0.10 -0.50 7.96 -2.39 -0.02 -0.51 16 38 H 0.10 -0.46 7.96 -2.39 -0.02 -0.48 16 39 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 41 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 42 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 45 H 0.42 -5.25 8.47 -92.71 -0.79 -6.03 16 46 H 0.13 -1.45 7.66 -2.39 -0.02 -1.47 16 47 H 0.13 -1.37 7.66 -2.39 -0.02 -1.39 16 48 H 0.18 -2.01 6.30 -2.91 -0.02 -2.02 16 49 H 0.16 -1.29 8.06 -2.91 -0.02 -1.32 16 50 H 0.11 -0.98 7.96 -2.39 -0.02 -1.00 16 51 H 0.40 -4.81 8.74 -74.05 -0.65 -5.46 16 52 H 0.13 0.64 4.87 -2.91 -0.01 0.62 16 Total: 0.00 -26.97 462.04 2.75 -24.22 By element: Atomic # 1 Polarization: -22.40 SS G_CDS: 0.25 Total: -22.15 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 6.66 Total: 14.39 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -2.57 Total: 0.71 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -2.30 Total: -10.82 kcal Atomic # 14 Polarization: -6.66 SS G_CDS: 2.56 Total: -4.10 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.18 Total: -0.99 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.68 Total: -1.26 kcal Total: -26.97 2.75 -24.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310320_6201210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.351 kcal (2) G-P(sol) polarization free energy of solvation -26.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds