Wall clock time and date at job start Sun Mar 7 2021 10:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86301 * 109.47009 * 2 1 4 4 C 1.86302 * 109.47198 * 239.99946 * 2 1 3 5 5 C 1.86301 * 109.47368 * 120.00177 * 2 1 3 6 6 S 1.81399 * 109.47406 * 59.04824 * 5 2 1 7 7 C 1.81396 * 103.00372 * 184.42731 * 6 5 2 8 8 C 1.52997 * 109.47207 * 175.57755 * 7 6 5 9 9 N 1.46500 * 109.46915 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99771 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00469 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.00083 * 180.02562 * 10 9 8 13 13 O 1.42899 * 109.47487 * 179.97438 * 12 10 9 14 14 C 1.35915 * 117.00488 * 180.02562 * 13 12 10 15 15 C 1.38672 * 120.05305 * 359.97438 * 14 13 12 16 16 C 1.38194 * 119.95140 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.06878 * 0.02709 * 16 15 14 18 18 C 1.50709 * 119.93561 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47151 * 300.00086 * 18 17 16 20 20 Si 1.86300 * 109.46740 * 179.97438 * 18 17 16 21 21 H 1.48500 * 109.47578 * 300.00450 * 20 18 17 22 22 H 1.48506 * 109.46817 * 60.00321 * 20 18 17 23 23 H 1.48494 * 109.47183 * 179.97438 * 20 18 17 24 24 C 1.38277 * 120.12042 * 0.24943 * 17 16 15 25 25 C 1.38193 * 120.04788 * 359.45218 * 24 17 16 26 26 Br 1.89099 * 120.03956 * 180.25588 * 25 24 17 27 27 H 1.09003 * 109.46908 * 299.99526 * 1 2 3 28 28 H 1.08996 * 109.47099 * 60.00106 * 1 2 3 29 29 H 1.09000 * 109.46889 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46847 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47103 * 299.99891 * 3 2 1 32 32 H 1.09003 * 109.46899 * 60.00468 * 3 2 1 33 33 H 1.08999 * 109.47476 * 297.55529 * 4 2 1 34 34 H 1.09001 * 109.47011 * 57.55681 * 4 2 1 35 35 H 1.09000 * 109.47442 * 177.55365 * 4 2 1 36 36 H 1.09003 * 109.46959 * 299.04835 * 5 2 1 37 37 H 1.09000 * 109.47446 * 179.04781 * 5 2 1 38 38 H 1.09000 * 109.47096 * 55.57794 * 7 6 5 39 39 H 1.09007 * 109.46776 * 295.57779 * 7 6 5 40 40 H 1.09000 * 109.47061 * 60.00017 * 8 7 6 41 41 H 1.08999 * 109.47403 * 299.99972 * 8 7 6 42 42 H 0.96993 * 120.00457 * 359.97438 * 9 8 7 43 43 H 1.09000 * 109.46960 * 60.00085 * 12 10 9 44 44 H 1.08994 * 109.47014 * 299.99836 * 12 10 9 45 45 H 1.08005 * 120.02883 * 359.96010 * 15 14 13 46 46 H 1.07997 * 119.96199 * 180.02562 * 16 15 14 47 47 H 1.08996 * 109.47006 * 60.00242 * 18 17 16 48 48 H 0.96707 * 113.99782 * 180.02562 * 19 18 17 49 49 H 1.08006 * 119.97956 * 179.72936 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5211 5 6 2.4841 -0.8783 1.5211 6 16 1.8564 -2.5801 1.5354 7 6 2.4436 -3.2183 3.1286 8 6 1.8967 -4.6307 3.3451 9 7 2.3714 -5.1463 4.6316 10 6 2.0140 -6.3813 5.0358 11 8 1.2989 -7.0657 4.3349 12 6 2.5018 -6.9116 6.3595 13 8 1.9911 -8.2308 6.5617 14 6 2.3390 -8.8569 7.7168 15 6 3.1552 -8.2152 8.6360 16 6 3.5071 -8.8535 9.8100 17 6 3.0469 -10.1311 10.0686 18 6 3.4330 -10.8248 11.3496 19 8 4.8551 -10.9496 11.4138 20 14 2.6575 -12.5180 11.3971 21 1 1.1797 -12.3878 11.3306 22 1 3.1368 -13.3145 10.2389 23 1 3.0384 -13.2018 12.6590 24 6 2.2376 -10.7760 9.1514 25 6 1.8775 -10.1399 7.9786 26 35 0.7648 -11.0192 6.7278 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2703 0.8901 33 1 2.1570 -1.9178 -1.4995 34 1 2.0853 -0.3903 -2.4106 35 1 3.5731 -0.8404 -1.5434 36 1 2.1347 -0.3547 2.4110 37 1 3.5739 -0.8931 1.5126 38 1 2.0964 -2.5674 3.9310 39 1 3.5333 -3.2465 3.1294 40 1 2.2439 -5.2817 2.5427 41 1 0.8071 -4.6026 3.3443 42 1 2.9436 -4.5993 5.1920 43 1 2.1542 -6.2609 7.1619 44 1 3.5914 -6.9393 6.3604 45 1 3.5157 -7.2172 8.4345 46 1 4.1424 -8.3537 10.5263 47 1 3.0809 -10.2403 12.1996 48 1 5.1757 -11.3883 12.2137 49 1 1.8828 -11.7759 9.3538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310322_6201210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:34:22 Heat of formation + Delta-G solvation = -117.813186 kcal Electronic energy + Delta-G solvation = -27493.158161 eV Core-core repulsion = 23330.764678 eV Total energy + Delta-G solvation = -4162.393483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 435.049 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67407 -40.61172 -39.08305 -37.38320 -36.43993 -33.50039 -32.48890 -32.09930 -30.35353 -30.14072 -29.37974 -28.84868 -28.50893 -28.42229 -26.39378 -24.57430 -23.70269 -22.30061 -21.77356 -19.60316 -18.73793 -18.44115 -17.66355 -17.49403 -17.05776 -16.88219 -16.69495 -16.62026 -16.28526 -15.58097 -15.36079 -15.17409 -14.94805 -14.79591 -14.67112 -14.53497 -14.27521 -14.10153 -14.07907 -13.96169 -13.82825 -13.75824 -13.61019 -13.40975 -13.22890 -13.21254 -13.11540 -12.91962 -12.52091 -12.34805 -12.22645 -12.07123 -11.84120 -11.71491 -11.44731 -11.15824 -11.02250 -10.89367 -10.88110 -10.76539 -10.45137 -10.29565 -9.96902 -9.26558 -8.67801 -0.02400 0.07345 0.35545 0.73574 1.06939 1.27019 1.36719 1.41485 1.44452 1.45142 1.61102 1.76937 1.86236 1.90757 2.36103 2.47594 2.49215 3.24693 3.36090 3.53317 3.58985 3.69699 3.70306 3.71855 3.80973 3.88127 4.02408 4.08743 4.20932 4.25290 4.31131 4.57096 4.57359 4.59979 4.60089 4.62492 4.73681 4.74630 4.74996 4.76954 4.78519 4.82251 4.99302 5.12808 5.27397 5.35995 5.39676 5.53163 5.56532 5.98672 6.23819 6.48270 7.02464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 1.021 2.979 3 C -0.442 4.442 4 C -0.447 4.447 5 C -0.384 4.384 6 S -0.215 6.215 7 C -0.115 4.115 8 C 0.137 3.863 9 N -0.727 5.727 10 C 0.516 3.484 11 O -0.503 6.503 12 C 0.039 3.961 13 O -0.274 6.274 14 C 0.160 3.840 15 C -0.204 4.204 16 C -0.031 4.031 17 C -0.107 4.107 18 C -0.074 4.074 19 O -0.545 6.545 20 Si 0.930 3.070 21 H -0.245 1.245 22 H -0.243 1.243 23 H -0.252 1.252 24 C -0.056 4.056 25 C -0.117 4.117 26 Br -0.024 7.024 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.402 0.598 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.080 0.920 48 H 0.382 0.618 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 6.289 4.791 8.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.216 2.784 3 C -0.551 4.551 4 C -0.555 4.555 5 C -0.576 4.576 6 S 0.010 5.990 7 C -0.264 4.264 8 C 0.014 3.986 9 N -0.383 5.383 10 C 0.300 3.700 11 O -0.375 6.375 12 C -0.040 4.040 13 O -0.185 6.185 14 C 0.112 3.888 15 C -0.224 4.224 16 C -0.049 4.049 17 C -0.108 4.108 18 C -0.184 4.184 19 O -0.351 6.351 20 Si 0.752 3.248 21 H -0.169 1.169 22 H -0.166 1.166 23 H -0.176 1.176 24 C -0.076 4.076 25 C -0.198 4.198 26 Br 0.062 6.938 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.237 0.763 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.158 0.842 46 H 0.156 0.844 47 H 0.098 0.902 48 H 0.230 0.770 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.939 4.288 2.344 5.257 hybrid contribution 1.804 1.475 2.331 3.296 sum 3.743 5.763 4.675 8.311 Atomic orbital electron populations 1.26083 1.19889 1.05090 1.04379 0.78808 0.67783 0.67174 0.64681 1.26041 1.06298 1.17883 1.04880 1.26089 1.06177 1.08587 1.14673 1.28105 1.09097 0.99974 1.20459 1.86955 1.73846 1.13420 1.24770 1.23640 1.04083 0.99151 0.99478 1.21016 1.00302 0.92093 0.85235 1.45770 1.53802 1.16537 1.22213 1.19945 0.81239 0.81601 0.87213 1.90828 1.34981 1.56699 1.55019 1.22525 1.00376 0.84202 0.96911 1.86276 1.68919 1.27990 1.35335 1.18600 0.93455 0.90968 0.85758 1.21273 1.03275 1.01865 0.95966 1.20907 0.95218 0.93247 0.95570 1.19140 1.00391 0.95343 0.95917 1.24576 0.87037 1.09606 0.97216 1.86493 1.18789 1.82997 1.46798 0.85957 0.80582 0.76375 0.81873 1.16881 1.16605 1.17557 1.20805 0.96404 0.99181 0.91166 1.20914 1.06308 0.94717 0.97825 1.96806 1.63813 1.76831 1.56384 0.91259 0.91107 0.90487 0.91096 0.90585 0.91104 0.90560 0.91057 0.91244 0.88526 0.88579 0.89385 0.89383 0.90091 0.90002 0.76340 0.88418 0.88405 0.84229 0.84373 0.90207 0.77032 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.61 8.65 101.05 0.87 1.48 16 2 Si 1.02 -3.01 12.30 -169.99 -2.09 -5.10 16 3 C -0.44 1.13 8.65 101.05 0.87 2.00 16 4 C -0.45 0.60 8.65 101.05 0.87 1.47 16 5 C -0.38 0.93 5.14 101.05 0.52 1.45 16 6 S -0.22 0.07 20.84 -107.50 -2.24 -2.17 16 7 C -0.12 0.26 6.05 37.16 0.22 0.48 16 8 C 0.14 -0.07 5.68 -4.04 -0.02 -0.10 16 9 N -0.73 1.33 5.56 -60.29 -0.33 0.99 16 10 C 0.52 0.71 7.91 -10.98 -0.09 0.62 16 11 O -0.50 -3.37 16.50 -14.35 -0.24 -3.60 16 12 C 0.04 -0.05 5.22 36.01 0.19 0.14 16 13 O -0.27 -0.82 9.01 -39.38 -0.35 -1.18 16 14 C 0.16 0.36 6.68 -39.20 -0.26 0.10 16 15 C -0.20 0.07 9.04 -39.44 -0.36 -0.28 16 16 C -0.03 0.01 9.60 -39.60 -0.38 -0.38 16 17 C -0.11 -0.09 5.42 -104.60 -0.57 -0.66 16 18 C -0.07 0.08 2.81 36.01 0.10 0.18 16 19 O -0.54 0.43 12.74 -35.23 -0.45 -0.01 16 20 Si 0.93 -0.59 25.07 -169.99 -4.26 -4.85 16 21 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 22 H -0.24 -0.25 7.11 56.52 0.40 0.15 16 23 H -0.25 0.19 7.11 56.52 0.40 0.59 16 24 C -0.06 -0.12 8.40 -39.58 -0.33 -0.45 16 25 C -0.12 -0.39 6.24 -39.38 -0.25 -0.63 16 26 Br -0.02 -0.10 33.16 -68.01 -2.26 -2.36 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.08 -0.03 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 31 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 32 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 33 H 0.08 -0.03 7.96 -51.93 -0.41 -0.44 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.10 -0.30 7.96 -51.92 -0.41 -0.72 16 37 H 0.10 -0.29 7.96 -51.92 -0.41 -0.70 16 38 H 0.09 -0.28 8.14 -51.92 -0.42 -0.71 16 39 H 0.09 -0.27 8.14 -51.92 -0.42 -0.70 16 40 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 41 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.40 -2.16 8.47 -40.82 -0.35 -2.51 16 43 H 0.10 -0.40 7.66 -51.93 -0.40 -0.80 16 44 H 0.10 -0.38 7.66 -51.93 -0.40 -0.78 16 45 H 0.14 -0.50 6.30 -52.48 -0.33 -0.83 16 46 H 0.14 -0.28 8.06 -52.49 -0.42 -0.70 16 47 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 48 H 0.38 -1.94 8.74 45.56 0.40 -1.54 16 49 H 0.14 0.17 4.88 -52.48 -0.26 -0.09 16 LS Contribution 440.54 15.07 6.64 6.64 Total: 0.00 -9.87 440.54 -11.38 -21.25 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: -7.20 Total: -15.04 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 1.40 Total: 5.43 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -0.33 Total: 0.99 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -1.04 Total: -4.79 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: -6.35 Total: -9.95 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.24 Total: -2.17 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.26 Total: -2.36 kcal Total LS contribution 6.64 Total: 6.64 kcal Total: -9.87 -11.38 -21.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310322_6201210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.560 kcal (2) G-P(sol) polarization free energy of solvation -9.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds