Wall clock time and date at job start Sun Mar 7 2021 08:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47485 * 2 1 4 4 C 1.35899 * 116.99666 * 82.72998 * 3 2 1 5 5 C 1.38739 * 120.05620 * 183.14128 * 4 3 2 6 6 C 1.38144 * 119.94569 * 179.74655 * 5 4 3 7 7 C 1.38268 * 120.05567 * 0.50422 * 6 5 4 8 8 C 1.50692 * 119.94692 * 179.74553 * 7 6 5 9 9 O 1.42904 * 109.47201 * 120.02251 * 8 7 6 10 10 Si 1.86307 * 109.46907 * 0.02562 * 8 7 6 11 11 C 1.38267 * 120.10780 * 359.76910 * 7 6 5 12 12 C 1.38146 * 120.05908 * 359.97438 * 11 7 6 13 13 C 1.50705 * 109.47061 * 240.00227 * 2 1 3 14 14 O 1.21283 * 119.99734 * 120.00317 * 13 2 1 15 15 N 1.34768 * 119.99833 * 299.99953 * 13 2 1 16 16 C 1.46501 * 119.99973 * 180.02562 * 15 13 2 17 17 H 1.09004 * 109.47291 * 34.99843 * 16 15 13 18 18 C 1.53004 * 109.47561 * 155.00109 * 16 15 13 19 19 C 1.52990 * 109.47227 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47100 * 299.99587 * 19 18 16 21 21 H 1.09004 * 109.47497 * 300.00213 * 20 19 18 22 22 C 1.50705 * 109.47130 * 180.02562 * 20 19 18 23 23 O 1.21279 * 120.00039 * 355.92883 * 22 20 19 24 24 N 1.34776 * 119.99661 * 175.64863 * 22 20 19 25 25 C 1.46502 * 119.99687 * 176.69088 * 24 22 20 26 26 C 1.46496 * 120.00314 * 356.68927 * 24 22 20 27 27 C 1.53004 * 109.47052 * 60.00342 * 20 19 18 28 28 C 1.52999 * 109.46774 * 299.99958 * 27 20 19 29 29 H 1.08996 * 109.47187 * 59.99592 * 1 2 3 30 30 H 1.08997 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46869 * 299.99968 * 1 2 3 32 32 H 1.08994 * 109.47647 * 120.00159 * 2 1 3 33 33 H 1.08004 * 120.02349 * 359.97438 * 5 4 3 34 34 H 1.07992 * 119.97436 * 180.23002 * 6 5 4 35 35 H 1.08997 * 109.47521 * 240.02586 * 8 7 6 36 36 H 0.96700 * 113.99510 * 299.99942 * 9 8 7 37 37 H 1.48498 * 109.99736 * 180.02562 * 10 8 7 38 38 H 1.48498 * 109.99882 * 301.31615 * 10 8 7 39 39 H 1.08002 * 119.97082 * 179.97438 * 11 7 6 40 40 H 1.08004 * 120.02774 * 179.97438 * 12 11 7 41 41 H 0.97004 * 120.00272 * 359.97438 * 15 13 2 42 42 H 1.08995 * 109.46867 * 59.99540 * 18 16 15 43 43 H 1.08999 * 109.46706 * 300.00025 * 18 16 15 44 44 H 1.09001 * 109.47128 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.47693 * 59.99899 * 19 18 16 46 46 H 1.08996 * 109.47621 * 89.99964 * 25 24 22 47 47 H 1.08998 * 109.47018 * 210.00124 * 25 24 22 48 48 H 1.09003 * 109.47299 * 329.99793 * 25 24 22 49 49 H 1.08995 * 109.47186 * 3.13844 * 26 24 22 50 50 H 1.09007 * 109.47185 * 123.13480 * 26 24 22 51 51 H 1.09002 * 109.47197 * 243.13653 * 26 24 22 52 52 H 1.08995 * 109.46896 * 60.00205 * 27 20 19 53 53 H 1.08999 * 109.47014 * 179.97438 * 27 20 19 54 54 H 1.08994 * 109.47151 * 299.99541 * 28 27 20 55 55 H 1.09001 * 109.46539 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0676 1.9800 1.2012 5 6 2.4585 3.3095 1.2671 6 6 2.5148 3.9519 2.4888 7 6 2.1922 3.2680 3.6464 8 6 2.2600 3.9696 4.9783 9 8 0.9691 3.9542 5.5911 10 14 2.8059 5.7327 4.7243 11 6 1.8078 1.9414 3.5839 12 6 1.7447 1.2959 2.3641 13 6 2.0323 -0.7104 -1.2305 14 8 2.7296 -0.1209 -2.0288 15 7 1.7067 -2.0006 -1.4438 16 6 2.1955 -2.6914 -2.6397 17 1 3.1949 -2.3314 -2.8843 18 6 2.2467 -4.1973 -2.3739 19 6 2.7578 -4.9185 -3.6226 20 6 1.8146 -4.6394 -4.7946 21 1 0.8152 -4.9995 -4.5505 22 6 2.3177 -5.3504 -6.0245 23 8 3.3691 -5.9539 -5.9887 24 7 1.5964 -5.3202 -7.1626 25 6 2.1192 -5.9494 -8.3780 26 6 0.2896 -4.6584 -7.1844 27 6 1.7634 -3.1335 -5.0605 28 6 1.2524 -2.4123 -3.8117 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.7149 3.8428 0.3636 34 1 2.8155 4.9879 2.5403 35 1 2.9743 3.4574 5.6228 36 1 0.2820 4.3938 5.0717 37 1 2.8774 6.4353 6.0306 38 1 4.1331 5.7626 4.0588 39 1 1.5566 1.4092 4.4895 40 1 1.4448 0.2595 2.3159 41 1 1.1493 -2.4722 -0.8051 42 1 1.2474 -4.5572 -2.1293 43 1 2.9189 -4.3961 -1.5392 44 1 2.7938 -5.9914 -3.4333 45 1 3.7571 -4.5585 -3.8668 46 1 1.7965 -6.9898 -8.4162 47 1 1.7417 -5.4196 -9.2525 48 1 3.2083 -5.9069 -8.3695 49 1 0.0959 -4.2046 -6.2125 50 1 0.2865 -3.8856 -7.9532 51 1 -0.4858 -5.3923 -7.4037 52 1 2.7628 -2.7735 -5.3047 53 1 1.0918 -2.9348 -5.8958 54 1 0.2530 -2.7723 -3.5676 55 1 1.2163 -1.3395 -4.0011 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_10157680.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:12 Heat of formation + Delta-G solvation = -106.345555 kcal Electronic energy + Delta-G solvation = -34608.618473 eV Core-core repulsion = 29998.647641 eV Total energy + Delta-G solvation = -4609.970831 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.90460 -41.48649 -40.67107 -39.27186 -38.49259 -37.13345 -36.69255 -35.46486 -33.39853 -32.08082 -31.91764 -31.56500 -30.73441 -28.74142 -27.23051 -26.67149 -25.53552 -24.33462 -23.82647 -23.55525 -22.33243 -21.48756 -21.10534 -20.13596 -19.51219 -18.63884 -18.19954 -17.98633 -17.40410 -17.24647 -16.90767 -16.74401 -16.66037 -16.41269 -15.96838 -15.79121 -15.71085 -15.34194 -15.13387 -14.98826 -14.88296 -14.72504 -14.32383 -14.30541 -14.23943 -13.98723 -13.72540 -13.53194 -13.49711 -13.38985 -13.33137 -13.31297 -13.16142 -12.86097 -12.72729 -12.63319 -12.34828 -12.30287 -12.12056 -12.09524 -11.93359 -11.66015 -11.56326 -11.36000 -10.96422 -10.72859 -10.41223 -10.15590 -10.04546 -9.74246 -9.20371 -4.99925 0.25223 0.33050 1.33679 1.41366 1.49906 1.53164 1.63511 1.96636 2.02726 2.49490 2.65969 3.36914 3.49561 3.56860 3.59752 3.61449 3.66499 3.73154 3.82735 3.87105 3.95658 3.97370 4.08106 4.12614 4.25806 4.28334 4.29537 4.35861 4.38445 4.41678 4.44566 4.47197 4.54041 4.57617 4.59527 4.67501 4.70470 4.71609 4.77862 4.85590 4.87325 4.96160 4.99690 5.04701 5.12488 5.13209 5.13989 5.19205 5.25573 5.28806 5.29238 5.44240 5.45831 5.48706 5.68288 6.27272 6.30114 6.47160 6.80413 7.08949 7.12216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 O -0.313 6.313 4 C 0.121 3.879 5 C -0.160 4.160 6 C -0.077 4.077 7 C -0.162 4.162 8 C -0.063 4.063 9 O -0.555 6.555 10 Si 0.768 3.232 11 C -0.056 4.056 12 C -0.208 4.208 13 C 0.517 3.483 14 O -0.570 6.570 15 N -0.702 5.702 16 C 0.144 3.856 17 H 0.056 0.944 18 C -0.113 4.113 19 C -0.096 4.096 20 C -0.098 4.098 21 H 0.131 0.869 22 C 0.505 3.495 23 O -0.589 6.589 24 N -0.623 5.623 25 C 0.080 3.920 26 C 0.059 3.941 27 C -0.109 4.109 28 C -0.119 4.119 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.107 0.893 36 H 0.395 0.605 37 H -0.299 1.299 38 H -0.290 1.290 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.421 0.579 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.057 0.943 47 H 0.094 0.906 48 H 0.052 0.948 49 H 0.103 0.897 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.046 0.954 53 H 0.097 0.903 54 H 0.100 0.900 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 -1.626 0.462 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 O -0.226 6.226 4 C 0.076 3.924 5 C -0.179 4.179 6 C -0.094 4.094 7 C -0.162 4.162 8 C -0.174 4.174 9 O -0.363 6.363 10 Si 0.675 3.325 11 C -0.074 4.074 12 C -0.227 4.227 13 C 0.303 3.697 14 O -0.448 6.448 15 N -0.355 5.355 16 C 0.039 3.961 17 H 0.074 0.926 18 C -0.151 4.151 19 C -0.134 4.134 20 C -0.119 4.119 21 H 0.149 0.851 22 C 0.294 3.706 23 O -0.470 6.470 24 N -0.355 5.355 25 C -0.063 4.063 26 C -0.082 4.082 27 C -0.147 4.147 28 C -0.157 4.157 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.245 0.755 37 H -0.227 1.227 38 H -0.217 1.217 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.259 0.741 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.113 0.887 48 H 0.071 0.929 49 H 0.121 0.879 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.065 0.935 53 H 0.115 0.885 54 H 0.118 0.882 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.994 -1.171 0.315 9.075 hybrid contribution 0.637 -0.844 0.052 1.059 sum -8.357 -2.015 0.367 8.605 Atomic orbital electron populations 1.22341 0.90163 1.05820 1.04364 1.22441 0.97373 0.82203 0.97714 1.86193 1.81060 1.26920 1.28414 1.19251 0.96177 0.92626 0.84340 1.20577 1.05370 0.92589 0.99338 1.20969 0.97652 0.99841 0.90962 1.20331 1.04831 0.95812 0.95268 1.24984 0.89558 1.10270 0.92569 1.86457 1.18520 1.82057 1.49249 0.93809 0.82775 0.75983 0.79926 1.20973 0.95212 0.93625 0.97595 1.21492 1.07727 1.01776 0.91661 1.20507 0.79651 0.82710 0.86872 1.90759 1.38958 1.66921 1.48140 1.45754 1.53538 1.10457 1.25792 1.21022 0.97709 0.92653 0.84701 0.92567 1.21744 1.04193 0.91455 0.97666 1.21244 0.98023 1.00938 0.93219 1.21398 1.02626 0.96164 0.91710 0.85132 1.21369 0.83626 0.79915 0.85672 1.90689 1.25645 1.45714 1.84935 1.47943 1.20939 1.56292 1.10336 1.21692 0.99632 0.98259 0.86704 1.22357 0.82348 0.98286 1.05251 1.21652 1.02181 0.91698 0.99218 1.21841 1.00306 1.00185 0.93391 0.91884 0.87012 0.89856 0.85931 0.84731 0.83565 0.87577 0.75485 1.22737 1.21747 0.84329 0.82866 0.74092 0.87823 0.90385 0.91071 0.93498 0.92466 0.88697 0.92898 0.87866 0.90459 0.90593 0.93539 0.88481 0.88199 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.31 9.14 71.98 0.66 1.96 16 2 C 0.06 -0.11 2.67 29.85 0.08 -0.04 16 3 O -0.31 -1.91 9.34 -73.37 -0.69 -2.60 16 4 C 0.12 0.43 6.54 22.51 0.15 0.57 16 5 C -0.16 -0.52 9.99 22.37 0.22 -0.30 16 6 C -0.08 -0.02 8.66 22.25 0.19 0.18 16 7 C -0.16 0.01 5.39 -19.85 -0.11 -0.10 16 8 C -0.06 0.05 2.82 71.23 0.20 0.25 16 9 O -0.55 0.44 12.77 -148.98 -1.90 -1.46 16 10 Si 0.77 -1.24 29.78 68.60 2.04 0.80 16 11 C -0.06 0.03 9.60 22.25 0.21 0.24 16 12 C -0.21 0.19 8.32 22.37 0.19 0.38 16 13 C 0.52 1.39 7.20 87.66 0.63 2.02 16 14 O -0.57 -8.17 16.16 16.00 0.26 -7.92 16 15 N -0.70 3.74 4.97 -442.52 -2.20 1.54 16 16 C 0.14 -0.40 2.45 44.99 0.11 -0.29 16 17 H 0.06 0.28 7.58 -2.38 -0.02 0.27 16 18 C -0.11 0.76 5.39 30.59 0.16 0.92 16 19 C -0.10 0.08 4.50 30.59 0.14 0.22 16 20 C -0.10 0.29 1.68 -11.54 -0.02 0.27 16 21 H 0.13 -1.20 7.47 -2.39 -0.02 -1.22 16 22 C 0.50 2.42 7.01 87.66 0.61 3.03 16 23 O -0.59 -8.67 15.60 -3.03 -0.05 -8.72 16 24 N -0.62 0.03 3.27 -871.89 -2.85 -2.83 16 25 C 0.08 0.00 10.45 127.77 1.34 1.34 16 26 C 0.06 -0.50 9.46 127.77 1.21 0.71 16 27 C -0.11 0.39 4.76 30.60 0.15 0.54 16 28 C -0.12 0.56 5.50 30.59 0.17 0.72 16 29 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.11 -1.62 7.56 -2.39 -0.02 -1.64 16 31 H 0.08 -0.67 7.28 -2.39 -0.02 -0.68 16 32 H 0.12 -0.86 6.02 -2.39 -0.01 -0.87 16 33 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.15 -0.53 4.87 -2.91 -0.01 -0.54 16 35 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 36 H 0.40 -3.43 8.70 -74.06 -0.64 -4.08 16 37 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 38 H -0.29 -1.09 7.11 99.48 0.71 -0.38 16 39 H 0.14 -0.37 8.06 -2.91 -0.02 -0.39 16 40 H 0.15 -1.01 5.68 -2.91 -0.02 -1.03 16 41 H 0.42 -5.60 8.02 -92.71 -0.74 -6.35 16 42 H 0.10 -1.28 8.14 -2.39 -0.02 -1.30 16 43 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.07 0.05 8.13 -2.39 -0.02 0.03 16 45 H 0.05 0.24 8.06 -2.39 -0.02 0.22 16 46 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.09 -0.49 8.07 -2.39 -0.02 -0.51 16 48 H 0.05 0.27 7.47 -2.39 -0.02 0.25 16 49 H 0.10 -1.20 4.26 -2.39 -0.01 -1.21 16 50 H 0.08 -0.78 8.14 -2.38 -0.02 -0.80 16 51 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 52 H 0.05 0.10 8.14 -2.39 -0.02 0.09 16 53 H 0.10 -0.69 5.41 -2.39 -0.01 -0.70 16 54 H 0.10 -1.04 8.14 -2.39 -0.02 -1.05 16 55 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -33.23 429.58 0.47 -32.75 By element: Atomic # 1 Polarization: -23.78 SS G_CDS: -0.43 Total: -24.21 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 6.29 Total: 12.64 kcal Atomic # 7 Polarization: 3.76 SS G_CDS: -5.05 Total: -1.29 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -2.38 Total: -20.70 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: 2.04 Total: 0.80 kcal Total: -33.23 0.47 -32.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_10157680.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.592 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds