Wall clock time and date at job start Sun Mar 7 2021 08:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99577 * 2 1 4 4 C 1.34774 * 119.99867 * 179.97438 * 2 1 3 5 5 O 1.21277 * 120.00025 * 3.70786 * 4 2 1 6 6 C 1.50696 * 119.99627 * 183.70739 * 4 2 1 7 7 H 1.08999 * 109.47472 * 322.99267 * 6 4 2 8 8 C 1.52996 * 109.47474 * 82.99516 * 6 4 2 9 9 C 1.52995 * 109.47682 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46662 * 299.99877 * 9 8 6 11 11 H 1.08998 * 109.47587 * 299.99284 * 10 9 8 12 12 N 1.46504 * 109.47174 * 179.97438 * 10 9 8 13 13 C 1.34781 * 120.00002 * 84.99879 * 12 10 9 14 14 O 1.21693 * 119.99838 * 0.02562 * 13 12 10 15 15 C 1.46675 * 120.00290 * 180.02562 * 13 12 10 16 16 C 1.37869 * 126.23660 * 179.71740 * 15 13 12 17 17 C 1.39836 * 107.08849 * 179.84498 * 16 15 13 18 18 C 1.50698 * 126.07032 * 180.15634 * 17 16 15 19 19 O 1.42902 * 109.47061 * 300.28087 * 18 17 16 20 20 Si 1.86295 * 109.47117 * 180.27917 * 18 17 16 21 21 C 1.35457 * 107.86318 * 0.41536 * 17 16 15 22 22 N 1.35536 * 108.87103 * 359.73821 * 21 17 16 23 23 C 1.52999 * 109.47447 * 59.99905 * 10 9 8 24 24 C 1.53002 * 109.46829 * 202.99368 * 6 4 2 25 25 H 1.09001 * 109.47058 * 269.99859 * 1 2 3 26 26 H 1.09002 * 109.47269 * 29.99969 * 1 2 3 27 27 H 1.09001 * 109.47107 * 150.00041 * 1 2 3 28 28 H 1.09003 * 109.46876 * 174.65069 * 3 2 1 29 29 H 1.09003 * 109.47538 * 294.64967 * 3 2 1 30 30 H 1.09000 * 109.47120 * 54.65682 * 3 2 1 31 31 H 1.09007 * 109.46843 * 300.00064 * 8 6 4 32 32 H 1.08999 * 109.46974 * 59.99446 * 8 6 4 33 33 H 1.08999 * 109.47431 * 59.99649 * 9 8 6 34 34 H 1.08999 * 109.47490 * 180.02562 * 9 8 6 35 35 H 0.97002 * 120.00460 * 265.00211 * 12 10 9 36 36 H 1.08005 * 126.45582 * 359.97438 * 16 15 13 37 37 H 1.08998 * 109.47030 * 60.27656 * 18 17 16 38 38 H 0.96700 * 114.00016 * 179.97438 * 19 18 17 39 39 H 1.48498 * 110.00331 * 298.67909 * 20 18 17 40 40 H 1.48506 * 110.00039 * 60.00352 * 20 18 17 41 41 H 1.07994 * 125.56309 * 179.76309 * 21 17 16 42 42 H 0.96998 * 125.67946 * 179.97438 * 22 21 17 43 43 H 1.08999 * 109.47588 * 179.97438 * 23 10 9 44 44 H 1.09006 * 109.46898 * 59.99676 * 23 10 9 45 45 H 1.09004 * 109.47204 * 60.00479 * 24 6 4 46 46 H 1.08990 * 109.47262 * 299.99616 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5344 -2.2164 -0.0669 6 6 3.6435 -1.1685 0.0849 7 1 4.0402 -0.3288 -0.4858 8 6 4.0725 -1.0387 1.5478 9 6 5.6000 -1.0394 1.6334 10 6 6.1425 -2.3488 1.0572 11 1 5.7463 -3.1887 1.6278 12 7 7.6052 -2.3492 1.1386 13 6 8.2169 -2.7452 2.2724 14 8 7.5542 -3.1028 3.2284 15 6 9.6814 -2.7452 2.3542 16 6 10.4367 -3.1173 3.4459 17 6 11.7798 -2.9672 3.0868 18 6 12.9705 -3.2592 3.9631 19 8 12.9124 -2.4416 5.1337 20 14 14.5372 -2.8903 3.0251 21 6 11.8205 -2.5072 1.8134 22 7 10.5520 -2.3681 1.3568 23 6 5.7136 -2.4786 -0.4058 24 6 4.1855 -2.4782 -0.4912 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 3.2653 1.0718 0.0958 29 1 2.0080 1.7978 -0.9340 30 1 1.8643 1.8806 0.8383 31 1 3.6863 -0.1056 1.9582 32 1 3.6758 -1.8783 2.1185 33 1 5.9963 -0.1995 1.0628 34 1 5.9055 -0.9474 2.6757 35 1 8.1336 -2.0645 0.3765 36 1 10.0617 -3.4620 4.3983 37 1 12.9594 -4.3099 4.2529 38 1 13.6492 -2.5771 5.7451 39 1 14.6252 -3.7567 1.8223 40 1 14.5646 -1.4606 2.6243 41 1 12.7173 -2.2875 1.2533 42 1 10.2996 -2.0546 0.4742 43 1 6.1005 -3.4112 -0.8165 44 1 6.1099 -1.6387 -0.9764 45 1 3.8800 -2.5706 -1.5335 46 1 3.7889 -3.3178 0.0795 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_10543058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:16 Heat of formation + Delta-G solvation = -59.115653 kcal Electronic energy + Delta-G solvation = -27237.598510 eV Core-core repulsion = 23322.233380 eV Total energy + Delta-G solvation = -3915.365130 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.60835 -41.57709 -40.53715 -38.67144 -37.57855 -36.66184 -35.48759 -32.88915 -31.94922 -31.62799 -30.49922 -28.84278 -27.24149 -26.44250 -24.81287 -23.89983 -23.19780 -21.57612 -21.26404 -20.66099 -20.07882 -19.72057 -18.26670 -18.14588 -17.56872 -17.34723 -17.05123 -16.79239 -16.40941 -15.77084 -15.55321 -15.23669 -15.11013 -14.98937 -14.94488 -14.71346 -14.52741 -14.26473 -14.11710 -14.00106 -13.51896 -13.49405 -13.43665 -13.42603 -13.28599 -12.98142 -12.76068 -12.47357 -12.33505 -12.20908 -11.93271 -11.59057 -11.47495 -11.37353 -10.79012 -10.33929 -10.32179 -9.93432 -9.76714 -9.41680 -4.85955 0.23122 1.30877 1.46209 1.48370 1.77329 1.80919 1.96276 2.02141 2.06476 2.17124 3.38000 3.52428 3.55139 3.60166 3.72770 3.89570 3.90036 4.02654 4.04531 4.05583 4.20205 4.23923 4.25192 4.35599 4.38432 4.39817 4.43504 4.52966 4.63087 4.70112 4.72822 4.77949 4.83652 4.84844 4.88665 4.91522 4.96685 5.05541 5.07636 5.18469 5.20917 5.35698 5.42275 5.46202 5.61300 6.23043 6.27185 6.41303 6.98987 7.01734 7.06330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.063 3.937 4 C 0.507 3.493 5 O -0.589 6.589 6 C -0.100 4.100 7 H 0.130 0.870 8 C -0.099 4.099 9 C -0.118 4.118 10 C 0.143 3.857 11 H 0.061 0.939 12 N -0.708 5.708 13 C 0.591 3.409 14 O -0.570 6.570 15 C -0.062 4.062 16 C -0.103 4.103 17 C -0.190 4.190 18 C -0.058 4.058 19 O -0.571 6.571 20 Si 0.787 3.213 21 C 0.034 3.966 22 N -0.513 5.513 23 C -0.112 4.112 24 C -0.097 4.097 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.412 0.588 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.399 0.601 39 H -0.280 1.280 40 H -0.289 1.289 41 H 0.190 0.810 42 H 0.438 0.562 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 6.371 -5.263 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C -0.078 4.078 4 C 0.296 3.704 5 O -0.469 6.469 6 C -0.121 4.121 7 H 0.148 0.852 8 C -0.138 4.138 9 C -0.157 4.157 10 C 0.039 3.961 11 H 0.080 0.920 12 N -0.359 5.359 13 C 0.379 3.621 14 O -0.449 6.449 15 C -0.176 4.176 16 C -0.130 4.130 17 C -0.196 4.196 18 C -0.167 4.167 19 O -0.381 6.381 20 Si 0.690 3.310 21 C -0.104 4.104 22 N -0.111 5.111 23 C -0.150 4.150 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.249 0.751 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.250 0.750 39 H -0.206 1.206 40 H -0.216 1.216 41 H 0.207 0.793 42 H 0.279 0.721 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.093 0.907 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.866 6.131 -5.827 10.293 hybrid contribution -0.992 -0.179 -0.264 1.042 sum 4.873 5.951 -6.091 9.812 Atomic orbital electron populations 1.21708 0.79144 1.03457 1.02125 1.47972 1.07622 1.07230 1.72726 1.22225 0.98229 0.83750 1.03611 1.21296 0.91305 0.82966 0.74844 1.90688 1.71534 1.33073 1.51632 1.21440 0.89530 1.01856 0.99245 0.85217 1.21380 0.95787 1.02899 0.93718 1.21833 0.94462 0.97920 1.01475 1.21062 0.78423 0.98501 0.98106 0.92050 1.45753 1.07877 1.67164 1.15140 1.17149 0.85255 0.76620 0.83086 1.90857 1.65802 1.49939 1.38334 1.20247 0.89541 1.15810 0.91969 1.21255 0.92472 1.01601 0.97656 1.19251 0.94375 1.10532 0.95463 1.24410 1.04062 0.97016 0.91255 1.86459 1.53357 1.64537 1.33724 0.93809 0.80227 0.76977 0.79950 1.21988 0.88160 1.04201 0.96061 1.41757 1.04864 1.50119 1.14361 1.21753 0.94974 1.04602 0.93676 1.21294 0.94810 0.95965 1.01535 0.92618 0.88553 0.92616 0.88357 0.90463 0.90503 0.89585 0.93454 0.88535 0.92914 0.75110 0.84980 0.90475 0.75004 1.20649 1.21639 0.79337 0.72092 0.90265 0.87946 0.90691 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.03 10.51 127.77 1.34 1.37 16 2 N -0.62 -0.29 3.27 -871.88 -2.85 -3.14 16 3 C 0.06 -0.51 10.25 127.77 1.31 0.80 16 4 C 0.51 2.77 6.80 87.66 0.60 3.36 16 5 O -0.59 -9.11 15.63 -3.02 -0.05 -9.16 16 6 C -0.10 0.19 1.66 -11.54 -0.02 0.17 16 7 H 0.13 -1.13 6.37 -2.39 -0.02 -1.14 16 8 C -0.10 0.10 5.01 30.59 0.15 0.25 16 9 C -0.12 0.22 5.50 30.59 0.17 0.38 16 10 C 0.14 -0.06 2.45 44.99 0.11 0.05 16 11 H 0.06 0.43 7.58 -2.39 -0.02 0.41 16 12 N -0.71 1.15 5.07 -446.49 -2.27 -1.12 16 13 C 0.59 4.32 7.75 86.45 0.67 4.99 16 14 O -0.57 -9.66 16.55 -4.33 -0.07 -9.73 16 15 C -0.06 -0.34 7.06 40.35 0.28 -0.06 16 16 C -0.10 -0.99 10.59 22.57 0.24 -0.75 16 17 C -0.19 -1.03 5.47 -20.12 -0.11 -1.14 16 18 C -0.06 -0.04 3.01 71.24 0.21 0.17 16 19 O -0.57 -1.37 12.86 -148.98 -1.92 -3.28 16 20 Si 0.79 -3.45 30.59 68.60 2.10 -1.35 16 21 C 0.03 0.01 10.45 83.48 0.87 0.88 16 22 N -0.51 1.17 5.99 -183.62 -1.10 0.07 16 23 C -0.11 0.61 5.39 30.61 0.17 0.77 16 24 C -0.10 0.03 4.71 30.61 0.14 0.17 16 25 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.10 -0.49 8.07 -2.39 -0.02 -0.51 16 27 H 0.05 0.29 7.37 -2.39 -0.02 0.27 16 28 H 0.10 -1.11 4.95 -2.39 -0.01 -1.12 16 29 H 0.08 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.09 -0.31 7.53 -2.38 -0.02 -0.32 16 32 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.41 -3.88 7.73 -92.71 -0.72 -4.60 16 36 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.08 -0.10 7.96 -2.39 -0.02 -0.12 16 38 H 0.40 -3.37 8.74 -74.06 -0.65 -4.02 16 39 H -0.28 0.17 7.11 99.48 0.71 0.88 16 40 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 41 H 0.19 -0.86 6.19 -2.91 -0.02 -0.88 16 42 H 0.44 -4.79 8.19 -92.71 -0.76 -5.55 16 43 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.10 -1.15 8.14 -2.38 -0.02 -1.17 16 45 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 46 H 0.05 0.30 7.88 -2.39 -0.02 0.29 16 Total: 0.00 -33.26 370.66 -1.08 -34.34 By element: Atomic # 1 Polarization: -17.01 SS G_CDS: -1.06 Total: -18.07 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.14 Total: 11.43 kcal Atomic # 7 Polarization: 2.03 SS G_CDS: -6.22 Total: -4.19 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -2.03 Total: -22.17 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.10 Total: -1.35 kcal Total: -33.26 -1.08 -34.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_10543058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.772 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds