Wall clock time and date at job start Sun Mar 7 2021 08:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 120.00206 * 2 1 4 4 C 1.34776 * 119.99676 * 179.97438 * 2 1 3 5 5 O 1.21277 * 120.00214 * 6.51717 * 4 2 1 6 6 C 1.50700 * 119.99948 * 186.50874 * 4 2 1 7 7 H 1.09003 * 109.47564 * 306.82128 * 6 4 2 8 8 C 1.53005 * 109.46942 * 66.81391 * 6 4 2 9 9 C 1.52997 * 109.47183 * 180.02562 * 8 6 4 10 10 C 1.52996 * 109.47370 * 300.00198 * 9 8 6 11 11 H 1.09003 * 109.46900 * 299.99898 * 10 9 8 12 12 N 1.46500 * 109.47411 * 180.02562 * 10 9 8 13 13 C 1.34774 * 119.99985 * 84.99807 * 12 10 9 14 14 O 1.21695 * 120.00408 * 5.03108 * 13 12 10 15 15 C 1.46679 * 119.99861 * 185.03526 * 13 12 10 16 16 C 1.37870 * 126.23350 * 353.83317 * 15 13 12 17 17 C 1.39837 * 107.08507 * 179.97438 * 16 15 13 18 18 C 1.50700 * 126.06538 * 179.97438 * 17 16 15 19 19 O 1.42894 * 109.47762 * 300.00698 * 18 17 16 20 20 Si 1.86306 * 109.46976 * 180.02562 * 18 17 16 21 21 C 1.35454 * 107.86383 * 0.26953 * 17 16 15 22 22 N 1.35528 * 108.87146 * 359.56371 * 21 17 16 23 23 C 1.46499 * 125.67671 * 180.17735 * 22 21 17 24 24 C 1.52992 * 109.47111 * 59.99969 * 10 9 8 25 25 C 1.52996 * 109.47535 * 186.81543 * 6 4 2 26 26 H 1.08997 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46896 * 299.99915 * 1 2 3 28 28 H 1.08999 * 109.47319 * 60.00257 * 1 2 3 29 29 H 1.09000 * 109.47275 * 265.17710 * 3 2 1 30 30 H 1.09005 * 109.47004 * 25.17124 * 3 2 1 31 31 H 1.08994 * 109.47449 * 145.17271 * 3 2 1 32 32 H 1.09001 * 109.47228 * 300.00054 * 8 6 4 33 33 H 1.08994 * 109.47150 * 59.99964 * 8 6 4 34 34 H 1.09003 * 109.46946 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46980 * 60.00561 * 9 8 6 36 36 H 0.97001 * 119.99814 * 265.00348 * 12 10 9 37 37 H 1.08002 * 126.45719 * 359.97438 * 16 15 13 38 38 H 1.09005 * 109.46776 * 60.01339 * 18 17 16 39 39 H 0.96704 * 114.00287 * 300.00099 * 19 18 17 40 40 H 1.48496 * 109.99874 * 58.68418 * 20 18 17 41 41 H 1.48502 * 110.00137 * 180.02562 * 20 18 17 42 42 H 1.08004 * 125.56089 * 179.73421 * 21 17 16 43 43 H 1.09005 * 109.46921 * 270.98855 * 23 22 21 44 44 H 1.08996 * 109.47436 * 30.99028 * 23 22 21 45 45 H 1.09006 * 109.47117 * 150.99517 * 23 22 21 46 46 H 1.08994 * 109.47323 * 60.00341 * 24 10 9 47 47 H 1.09001 * 109.47210 * 180.02562 * 24 10 9 48 48 H 1.08995 * 109.47216 * 59.99906 * 25 6 4 49 49 H 1.09003 * 109.46900 * 300.00092 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5383 -2.2142 -0.1182 6 6 3.6386 -1.1714 0.1485 7 1 4.0793 -0.5113 -0.5986 8 6 4.0143 -0.6804 1.5480 9 6 5.5369 -0.6840 1.6980 10 6 6.0658 -2.1055 1.4973 11 1 5.6255 -2.7659 2.2444 12 7 7.5237 -2.1091 1.6415 13 6 8.0795 -2.2136 2.8649 14 8 7.3747 -2.3969 3.8399 15 6 9.5340 -2.1064 3.0211 16 6 10.4588 -2.0193 2.0023 17 6 11.7206 -1.9335 2.5990 18 6 13.0381 -1.8220 1.8761 19 8 13.2197 -2.9647 1.0376 20 14 14.4233 -1.7381 3.1191 21 6 11.5488 -1.9749 3.9420 22 7 10.2243 -2.0739 4.2116 23 6 9.6270 -2.1415 5.5476 24 6 5.6901 -2.5966 0.0978 25 6 4.1669 -2.5932 -0.0521 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.4541 1.5401 -1.0240 30 1 1.5737 2.0484 0.4371 31 1 3.1097 1.1616 0.5869 32 1 3.6380 0.3326 1.6909 33 1 3.5737 -1.3404 2.2951 34 1 5.8046 -0.3337 2.6949 35 1 5.9772 -0.0236 0.9510 36 1 8.0889 -2.0363 0.8566 37 1 10.2484 -2.0176 0.9430 38 1 13.0423 -0.9189 1.2656 39 1 13.2264 -3.8058 1.5149 40 1 14.4087 -2.9492 3.9783 41 1 15.7282 -1.6274 2.4189 42 1 12.3382 -1.9329 4.6778 43 1 9.5678 -3.1820 5.8669 44 1 10.2435 -1.5805 6.2500 45 1 8.6254 -1.7123 5.5200 46 1 6.1304 -1.9363 -0.6493 47 1 6.0665 -3.6095 -0.0450 48 1 3.8992 -2.9430 -1.0490 49 1 3.7262 -3.2533 0.6951 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310356_10803934.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:21 Heat of formation + Delta-G solvation = -47.727226 kcal Electronic energy + Delta-G solvation = -29586.492519 eV Core-core repulsion = 25516.083609 eV Total energy + Delta-G solvation = -4070.408909 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.56193 -41.51142 -40.34424 -38.54005 -37.78701 -36.57953 -35.39665 -33.88992 -32.04522 -31.79156 -30.28999 -28.84853 -28.33067 -27.18064 -25.75453 -24.57300 -23.91669 -22.92264 -21.46167 -21.09455 -20.44515 -20.06382 -18.89228 -17.99922 -17.74595 -17.45910 -17.01556 -16.85479 -16.70688 -16.63882 -15.98815 -15.73102 -15.59529 -15.23181 -15.08487 -15.05620 -14.95314 -14.34733 -14.27665 -13.99540 -13.92109 -13.67286 -13.64008 -13.51900 -13.40922 -13.28367 -13.18544 -13.17294 -12.82687 -12.59751 -12.39350 -12.36055 -12.17213 -11.78497 -11.60265 -11.37806 -11.03440 -10.63726 -10.47143 -10.12001 -9.69926 -9.68867 -9.26630 -4.95359 0.44954 1.31612 1.53186 1.56839 1.62985 1.64030 2.00031 2.00288 2.29423 2.37700 3.37698 3.47266 3.50483 3.54580 3.72014 3.77683 3.89994 3.91619 3.98897 4.05529 4.10543 4.17011 4.23292 4.24629 4.26034 4.30792 4.36081 4.37173 4.43965 4.47375 4.58978 4.61294 4.65595 4.70093 4.73694 4.76899 4.89300 4.91447 4.96709 5.05740 5.06209 5.16417 5.19855 5.28621 5.43476 5.44073 5.66438 5.89137 6.10816 6.31326 6.46362 6.51688 7.17947 7.18310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.623 5.623 3 C 0.064 3.936 4 C 0.518 3.482 5 O -0.536 6.536 6 C -0.107 4.107 7 H 0.098 0.902 8 C -0.114 4.114 9 C -0.126 4.126 10 C 0.146 3.854 11 H 0.093 0.907 12 N -0.716 5.716 13 C 0.592 3.408 14 O -0.546 6.546 15 C -0.054 4.054 16 C -0.113 4.113 17 C -0.206 4.206 18 C -0.037 4.037 19 O -0.532 6.532 20 Si 0.679 3.321 21 C 0.027 3.973 22 N -0.404 5.404 23 C 0.064 3.936 24 C -0.126 4.126 25 C -0.096 4.096 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.375 0.625 40 H -0.261 1.261 41 H -0.258 1.258 42 H 0.173 0.827 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 6.002 0.961 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.357 5.357 3 C -0.078 4.078 4 C 0.306 3.694 5 O -0.413 6.413 6 C -0.128 4.128 7 H 0.116 0.884 8 C -0.152 4.152 9 C -0.165 4.165 10 C 0.042 3.958 11 H 0.111 0.889 12 N -0.366 5.366 13 C 0.380 3.620 14 O -0.425 6.425 15 C -0.167 4.167 16 C -0.139 4.139 17 C -0.213 4.213 18 C -0.148 4.148 19 O -0.338 6.338 20 Si 0.580 3.420 21 C -0.109 4.109 22 N -0.076 5.076 23 C -0.076 4.076 24 C -0.165 4.165 25 C -0.134 4.134 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.163 0.837 38 H 0.132 0.868 39 H 0.222 0.778 40 H -0.185 1.185 41 H -0.183 1.183 42 H 0.190 0.810 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.122 0.878 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.405 5.391 1.806 5.856 hybrid contribution -0.013 -0.863 -0.726 1.128 sum 1.392 4.528 1.080 4.859 Atomic orbital electron populations 1.21720 0.79073 1.04330 1.01391 1.47721 1.07249 1.06473 1.74305 1.22116 0.98015 0.85289 1.02409 1.20730 0.90061 0.83128 0.75500 1.90708 1.70311 1.31330 1.48912 1.21396 0.91641 1.00129 0.99681 0.88420 1.21670 0.96121 1.02255 0.95105 1.21915 0.94786 0.96832 1.02953 1.21055 0.78973 0.97357 0.98449 0.88885 1.45704 1.07756 1.75060 1.08128 1.16965 0.85450 0.76057 0.83514 1.90809 1.63531 1.49783 1.38376 1.20050 0.92332 1.18556 0.85747 1.21181 0.91147 1.03796 0.97811 1.19734 0.95942 1.12958 0.92619 1.24268 0.99017 0.91257 1.00217 1.86581 1.94423 1.16534 1.36244 0.95403 0.77605 0.88469 0.80537 1.21861 0.85027 1.07147 0.96912 1.43814 1.05669 1.51794 1.06310 1.22342 1.01244 1.04075 0.79981 1.21843 0.96598 1.02429 0.95581 1.21303 0.93621 0.94693 1.03784 0.89487 0.92101 0.92170 0.92327 0.90644 0.89849 0.90195 0.90809 0.90877 0.91187 0.76163 0.83711 0.86753 0.77799 1.18527 1.18292 0.80998 0.90295 0.89508 0.87826 0.90974 0.90503 0.90517 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.02 10.66 59.85 0.64 0.62 16 2 N -0.62 -0.12 3.27 -189.52 -0.62 -0.74 16 3 C 0.06 -0.20 9.93 59.85 0.59 0.40 16 4 C 0.52 1.10 6.95 -10.99 -0.08 1.02 16 5 O -0.54 -3.31 15.33 5.56 0.09 -3.23 16 6 C -0.11 0.10 1.71 -91.77 -0.16 -0.06 16 7 H 0.10 -0.25 7.75 -51.93 -0.40 -0.66 16 8 C -0.11 0.18 4.87 -26.73 -0.13 0.05 16 9 C -0.13 0.20 5.49 -26.73 -0.15 0.05 16 10 C 0.15 -0.11 2.50 -67.94 -0.17 -0.28 16 11 H 0.09 0.15 7.51 -51.93 -0.39 -0.24 16 12 N -0.72 0.46 5.06 -55.12 -0.28 0.18 16 13 C 0.59 1.26 7.73 -12.85 -0.10 1.16 16 14 O -0.55 -2.71 14.37 5.19 0.07 -2.64 16 15 C -0.05 -0.08 6.88 -81.98 -0.56 -0.64 16 16 C -0.11 -0.05 10.29 -39.12 -0.40 -0.45 16 17 C -0.21 -0.01 5.44 -105.02 -0.57 -0.58 16 18 C -0.04 0.02 3.02 36.01 0.11 0.13 16 19 O -0.53 -0.61 12.88 -35.23 -0.45 -1.06 16 20 Si 0.68 -0.95 30.59 -169.99 -5.20 -6.15 16 21 C 0.03 -0.01 9.94 -16.91 -0.17 -0.18 16 22 N -0.40 -0.29 3.16 -120.23 -0.38 -0.67 16 23 C 0.06 -0.06 10.54 59.85 0.63 0.57 16 24 C -0.13 0.25 5.39 -26.71 -0.14 0.10 16 25 C -0.10 0.03 4.53 -26.70 -0.12 -0.09 16 26 H 0.09 0.16 6.92 -51.93 -0.36 -0.20 16 27 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 28 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 29 H 0.06 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.07 -0.30 8.04 -51.93 -0.42 -0.72 16 31 H 0.08 -0.34 4.17 -51.93 -0.22 -0.56 16 32 H 0.08 -0.22 5.29 -51.93 -0.27 -0.49 16 33 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 34 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 35 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 36 H 0.40 -1.10 7.51 -40.82 -0.31 -1.41 16 37 H 0.15 -0.18 7.46 -52.49 -0.39 -0.57 16 38 H 0.11 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.37 -0.52 8.70 45.56 0.40 -0.13 16 40 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 41 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16 42 H 0.17 -0.55 6.19 -52.48 -0.32 -0.87 16 43 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 44 H 0.09 -0.30 8.14 -51.93 -0.42 -0.73 16 45 H 0.10 0.06 6.42 -51.93 -0.33 -0.27 16 46 H 0.07 -0.23 8.14 -51.93 -0.42 -0.66 16 47 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 48 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 49 H 0.08 0.11 8.03 -51.93 -0.42 -0.31 16 LS Contribution 386.25 15.07 5.82 5.82 Total: 0.00 -10.07 386.25 -9.43 -19.50 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -7.70 Total: -12.82 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.78 Total: 1.81 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -1.28 Total: -1.24 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.29 Total: -6.93 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.20 Total: -6.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -10.07 -9.43 -19.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_10803934.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.231 kcal (2) G-P(sol) polarization free energy of solvation -10.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds