Wall clock time and date at job start Sun Mar 7 2021 08:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46511 * 119.99852 * 2 1 4 4 C 1.34776 * 120.00177 * 179.97438 * 2 1 3 5 5 O 1.21283 * 119.99934 * 4.92401 * 4 2 1 6 6 C 1.50696 * 119.99838 * 184.91992 * 4 2 1 7 7 H 1.08999 * 109.47286 * 306.39984 * 6 4 2 8 8 C 1.53002 * 109.47395 * 66.40505 * 6 4 2 9 9 C 1.53000 * 109.47016 * 179.97438 * 8 6 4 10 10 C 1.53008 * 109.46965 * 299.99764 * 9 8 6 11 11 H 1.08999 * 109.47007 * 300.00118 * 10 9 8 12 12 N 1.46498 * 109.46876 * 180.02562 * 10 9 8 13 13 C 1.34770 * 120.00401 * 155.00116 * 12 10 9 14 14 O 1.21699 * 119.99640 * 354.94507 * 13 12 10 15 15 C 1.46677 * 120.00466 * 174.94177 * 13 12 10 16 16 C 1.37870 * 126.22917 * 4.96147 * 15 13 12 17 17 C 1.39840 * 107.08049 * 179.84268 * 16 15 13 18 18 C 1.35444 * 107.86688 * 0.41664 * 17 16 15 19 19 C 1.50703 * 125.56421 * 179.71815 * 18 17 16 20 20 O 1.42902 * 109.46978 * 150.01950 * 19 18 17 21 21 Si 1.86302 * 109.47305 * 30.02413 * 19 18 17 22 22 N 1.35529 * 108.87099 * 359.73892 * 18 17 16 23 23 C 1.46504 * 125.67934 * 179.97438 * 22 18 17 24 24 C 1.52989 * 109.47151 * 60.00402 * 10 9 8 25 25 C 1.52999 * 109.47212 * 299.99785 * 24 10 9 26 26 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47310 * 300.00267 * 1 2 3 28 28 H 1.08996 * 109.47619 * 59.99983 * 1 2 3 29 29 H 1.08997 * 109.46714 * 272.16064 * 3 2 1 30 30 H 1.08999 * 109.46865 * 32.15465 * 3 2 1 31 31 H 1.08998 * 109.46539 * 152.16061 * 3 2 1 32 32 H 1.08997 * 109.46810 * 60.00057 * 8 6 4 33 33 H 1.08993 * 109.46869 * 299.99924 * 8 6 4 34 34 H 1.09001 * 109.46982 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.47437 * 60.00040 * 9 8 6 36 36 H 0.97008 * 120.00102 * 334.99872 * 12 10 9 37 37 H 1.07998 * 126.46146 * 359.97438 * 16 15 13 38 38 H 1.08008 * 126.06475 * 180.15017 * 17 16 15 39 39 H 1.08991 * 109.47152 * 270.02064 * 19 18 17 40 40 H 0.96700 * 114.00686 * 300.00490 * 20 19 18 41 41 H 1.48499 * 110.00213 * 179.97438 * 21 19 18 42 42 H 1.48498 * 109.99945 * 301.32066 * 21 19 18 43 43 H 1.09003 * 109.46980 * 276.79230 * 23 22 18 44 44 H 1.08995 * 109.47279 * 36.78252 * 23 22 18 45 45 H 1.08998 * 109.47545 * 156.78800 * 23 22 18 46 46 H 1.09004 * 109.47222 * 59.99514 * 24 10 9 47 47 H 1.08996 * 109.47669 * 179.97438 * 24 10 9 48 48 H 1.09001 * 109.47337 * 179.97438 * 25 24 10 49 49 H 1.08992 * 109.47160 * 299.99994 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5359 -2.2156 -0.0892 6 6 3.6417 -1.1694 0.1125 7 1 4.0645 -0.5256 -0.6588 8 6 4.0512 -0.6494 1.4919 9 6 5.5770 -0.6524 1.6057 10 6 6.0993 -2.0789 1.4227 11 1 5.6761 -2.7224 2.1939 12 7 7.5602 -2.0817 1.5322 13 6 8.2057 -3.2040 1.9064 14 8 7.5720 -4.1873 2.2420 15 6 9.6720 -3.2405 1.9092 16 6 10.5139 -2.1805 1.6479 17 6 11.8233 -2.6580 1.7624 18 6 11.7597 -3.9742 2.0754 19 6 12.9431 -4.8832 2.2863 20 8 12.5974 -5.9058 3.2227 21 14 14.3761 -3.8937 2.9483 22 7 10.4581 -4.3405 2.1676 23 6 9.9691 -5.6838 2.4882 24 6 5.6898 -2.5988 0.0433 25 6 4.1641 -2.5959 -0.0706 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.3456 1.6028 -1.0269 30 1 1.6256 2.0185 0.5469 31 1 3.1661 1.1291 0.4799 32 1 3.6285 -1.2934 2.2631 33 1 3.6787 0.3665 1.6224 34 1 5.8687 -0.2824 2.5886 35 1 6.0001 -0.0088 0.8345 36 1 8.0629 -1.2758 1.3353 37 1 10.2181 -1.1710 1.4031 38 1 12.7252 -2.0807 1.6216 39 1 13.2243 -5.3396 1.3373 40 1 12.3360 -5.5714 4.0916 41 1 15.5493 -4.7788 3.1611 42 1 14.7248 -2.8069 1.9983 43 1 9.9583 -6.2920 1.5836 44 1 10.6260 -6.1430 3.2268 45 1 8.9591 -5.6160 2.8925 46 1 6.1129 -1.9551 -0.7279 47 1 6.0622 -3.6148 -0.0873 48 1 3.8723 -2.9659 -1.0534 49 1 3.7410 -3.2395 0.7006 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_10803936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:58:24 Heat of formation + Delta-G solvation = -45.938964 kcal Electronic energy + Delta-G solvation = -29666.818958 eV Core-core repulsion = 25596.487594 eV Total energy + Delta-G solvation = -4070.331365 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61506 -41.57358 -40.46612 -38.61160 -37.78043 -36.66299 -35.46913 -33.77485 -32.07435 -31.86049 -30.64952 -28.74002 -27.56039 -27.31996 -26.53572 -24.17375 -23.74136 -22.85359 -21.40743 -21.36850 -20.44026 -20.12642 -18.85807 -18.12512 -18.02219 -17.45943 -17.15858 -16.90603 -16.70724 -16.30891 -16.05152 -15.62356 -15.47126 -15.15118 -15.03275 -15.00511 -14.84119 -14.52829 -14.40316 -14.31975 -13.99750 -13.69965 -13.55578 -13.50337 -13.29330 -13.17971 -13.15316 -13.02262 -12.69003 -12.63890 -12.34355 -12.17409 -12.07870 -12.01173 -11.58321 -11.30988 -11.15207 -10.76775 -10.63882 -10.16391 -9.75635 -9.69883 -9.10783 -4.90030 0.36943 1.19267 1.49804 1.53027 1.74436 1.76128 2.02244 2.05404 2.32516 2.36313 3.28283 3.39424 3.56020 3.58053 3.65608 3.73620 3.94970 3.99937 4.11028 4.15485 4.24487 4.31112 4.31691 4.33081 4.35572 4.41048 4.44153 4.45944 4.49733 4.55659 4.61613 4.70673 4.76125 4.80403 4.87822 4.90459 4.95466 5.04744 5.06156 5.12725 5.14444 5.18341 5.25719 5.31892 5.47691 5.48863 5.73203 5.98800 6.12635 6.31254 6.50318 6.56595 7.10251 7.16034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.622 5.622 3 C 0.056 3.944 4 C 0.506 3.494 5 O -0.593 6.593 6 C -0.098 4.098 7 H 0.128 0.872 8 C -0.109 4.109 9 C -0.113 4.113 10 C 0.147 3.853 11 H 0.062 0.938 12 N -0.698 5.698 13 C 0.586 3.414 14 O -0.588 6.588 15 C -0.081 4.081 16 C -0.121 4.121 17 C -0.213 4.213 18 C 0.012 3.988 19 C -0.060 4.060 20 O -0.555 6.555 21 Si 0.814 3.186 22 N -0.403 5.403 23 C 0.055 3.945 24 C -0.119 4.119 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.419 0.581 37 H 0.178 0.822 38 H 0.163 0.837 39 H 0.111 0.889 40 H 0.395 0.605 41 H -0.296 1.296 42 H -0.271 1.271 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.057 0.943 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 11.504 1.789 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.354 5.354 3 C -0.085 4.085 4 C 0.296 3.704 5 O -0.474 6.474 6 C -0.119 4.119 7 H 0.146 0.854 8 C -0.147 4.147 9 C -0.151 4.151 10 C 0.042 3.958 11 H 0.080 0.920 12 N -0.349 5.349 13 C 0.375 3.625 14 O -0.471 6.471 15 C -0.194 4.194 16 C -0.148 4.148 17 C -0.236 4.236 18 C -0.106 4.106 19 C -0.168 4.168 20 O -0.363 6.363 21 Si 0.716 3.284 22 N -0.076 5.076 23 C -0.085 4.085 24 C -0.158 4.158 25 C -0.132 4.132 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.257 0.743 37 H 0.195 0.805 38 H 0.181 0.819 39 H 0.128 0.872 40 H 0.246 0.754 41 H -0.223 1.223 42 H -0.197 1.197 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.599 9.825 1.415 10.559 hybrid contribution -0.688 -0.797 -0.864 1.362 sum 2.911 9.028 0.551 9.502 Atomic orbital electron populations 1.21755 0.79331 1.02950 1.02898 1.47915 1.07516 1.07198 1.72803 1.22426 0.98750 0.83728 1.03630 1.21330 0.91356 0.82973 0.74759 1.90689 1.71511 1.33341 1.51839 1.21386 0.89465 0.99260 1.01763 0.85431 1.21693 0.96202 1.03090 0.93740 1.21769 0.94434 0.93830 1.05025 1.21020 0.78701 0.99128 0.96927 0.92004 1.45534 1.07604 1.13085 1.68705 1.17255 0.85675 0.83351 0.76224 1.90774 1.69256 1.36307 1.50733 1.20213 0.91170 0.89499 1.18536 1.21678 0.91747 0.98498 1.02834 1.20924 0.98934 0.93171 1.10597 1.21407 0.84804 0.96376 1.08031 1.25253 1.01044 0.93821 0.96714 1.86455 1.89504 1.34016 1.26282 0.92925 0.71587 0.76554 0.87358 1.43911 1.05057 1.08914 1.49690 1.22552 1.02801 0.80171 1.03021 1.21843 0.94856 1.01208 0.97869 1.21204 0.94740 0.95450 1.01779 0.92334 0.90337 0.90855 0.91318 0.89316 0.87780 0.92761 0.87255 0.89159 0.87673 0.74295 0.80516 0.81945 0.87161 0.75399 1.22315 1.19718 0.91931 0.86353 0.89381 0.89193 0.93978 0.92386 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.01 10.69 127.77 1.37 1.35 16 2 N -0.62 0.24 3.27 -871.88 -2.85 -2.61 16 3 C 0.06 -0.53 9.95 127.77 1.27 0.74 16 4 C 0.51 2.69 6.97 87.66 0.61 3.30 16 5 O -0.59 -9.49 15.32 -3.04 -0.05 -9.53 16 6 C -0.10 0.20 1.70 -11.54 -0.02 0.18 16 7 H 0.13 -0.99 7.74 -2.39 -0.02 -1.01 16 8 C -0.11 0.69 4.83 30.60 0.15 0.84 16 9 C -0.11 1.01 5.39 30.60 0.16 1.18 16 10 C 0.15 -0.17 2.50 44.99 0.11 -0.06 16 11 H 0.06 0.35 7.51 -2.39 -0.02 0.33 16 12 N -0.70 1.24 5.06 -446.51 -2.26 -1.02 16 13 C 0.59 3.69 7.74 86.45 0.67 4.36 16 14 O -0.59 -8.51 14.16 -4.35 -0.06 -8.57 16 15 C -0.08 -0.35 6.88 40.35 0.28 -0.07 16 16 C -0.12 0.16 10.36 22.57 0.23 0.39 16 17 C -0.21 0.17 9.37 22.01 0.21 0.38 16 18 C 0.01 0.01 6.14 41.34 0.25 0.27 16 19 C -0.06 0.09 2.99 71.24 0.21 0.30 16 20 O -0.55 0.81 10.13 -148.98 -1.51 -0.70 16 21 Si 0.81 -3.76 31.29 68.60 2.15 -1.61 16 22 N -0.40 -1.92 3.16 -519.71 -1.64 -3.56 16 23 C 0.06 0.26 10.32 127.77 1.32 1.57 16 24 C -0.12 -0.10 5.50 30.59 0.17 0.07 16 25 C -0.09 -0.34 4.52 30.60 0.14 -0.20 16 26 H 0.06 0.35 6.91 -2.39 -0.02 0.33 16 27 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 28 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.07 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.09 -1.06 8.09 -2.39 -0.02 -1.07 16 31 H 0.10 -1.38 3.97 -2.39 -0.01 -1.39 16 32 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.11 -1.23 5.28 -2.39 -0.01 -1.24 16 34 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.10 -1.50 8.14 -2.39 -0.02 -1.52 16 36 H 0.42 -3.69 7.50 -92.70 -0.70 -4.38 16 37 H 0.18 -1.55 7.45 -2.91 -0.02 -1.58 16 38 H 0.16 -0.70 6.62 -2.91 -0.02 -0.72 16 39 H 0.11 -0.01 7.96 -2.39 -0.02 -0.03 16 40 H 0.40 -3.41 8.30 -74.06 -0.61 -4.02 16 41 H -0.30 -0.74 7.11 99.48 0.71 -0.03 16 42 H -0.27 0.37 6.76 99.48 0.67 1.04 16 43 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.12 0.05 5.30 -2.39 -0.01 0.03 16 45 H 0.09 0.75 5.87 -2.39 -0.01 0.73 16 46 H 0.09 -0.33 8.14 -2.38 -0.02 -0.35 16 47 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.05 0.43 8.03 -2.39 -0.02 0.41 16 Total: 0.00 -29.41 380.04 0.58 -28.83 By element: Atomic # 1 Polarization: -15.50 SS G_CDS: -0.33 Total: -15.83 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 7.13 Total: 14.61 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -6.76 Total: -7.19 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.62 Total: -18.81 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.15 Total: -1.61 kcal Total: -29.41 0.58 -28.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_10803936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.107 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds