Wall clock time and date at job start Sun Mar 7 2021 09:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38969 * 119.95791 * 2 1 4 4 O 1.35716 * 119.91290 * 0.02562 * 3 2 1 5 5 C 1.39021 * 120.17713 * 180.02562 * 3 2 1 6 6 C 1.50698 * 119.95476 * 180.02562 * 5 3 2 7 7 O 1.42897 * 109.47323 * 75.01887 * 6 5 3 8 8 Si 1.86305 * 109.46839 * 195.02088 * 6 5 3 9 9 C 1.37683 * 120.08731 * 0.03684 * 5 3 2 10 10 C 1.39752 * 119.90748 * 359.97438 * 9 5 3 11 11 C 1.47615 * 120.08277 * 179.97438 * 10 9 5 12 12 O 1.21582 * 120.00159 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99840 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99771 * 180.02562 * 13 11 10 15 15 H 1.08992 * 109.47397 * 325.00275 * 14 13 11 16 16 C 1.53002 * 109.46799 * 85.00174 * 14 13 11 17 17 C 1.52997 * 109.46817 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47452 * 300.00239 * 17 16 14 19 19 H 1.09002 * 109.46935 * 300.00125 * 18 17 16 20 20 C 1.50703 * 109.47304 * 180.02562 * 18 17 16 21 21 O 1.21281 * 119.99994 * 0.02562 * 20 18 17 22 22 N 1.34770 * 119.99761 * 179.97438 * 20 18 17 23 23 C 1.46504 * 120.00094 * 180.02562 * 22 20 18 24 24 C 1.46505 * 120.00232 * 0.02562 * 22 20 18 25 25 C 1.52999 * 109.47159 * 59.99536 * 18 17 16 26 26 C 1.52997 * 109.47317 * 300.00546 * 25 18 17 27 27 C 1.37727 * 119.95399 * 180.31595 * 2 1 3 28 28 H 1.08997 * 109.47103 * 90.00028 * 1 2 3 29 29 H 1.09000 * 109.47576 * 210.00563 * 1 2 3 30 30 H 1.09004 * 109.47224 * 330.00419 * 1 2 3 31 31 H 0.96697 * 114.00253 * 269.98401 * 4 3 2 32 32 H 1.09004 * 109.47185 * 315.01513 * 6 5 3 33 33 H 0.96703 * 113.99698 * 180.02562 * 7 6 5 34 34 H 1.48499 * 109.99692 * 178.68134 * 8 6 5 35 35 H 1.48501 * 109.99640 * 299.99384 * 8 6 5 36 36 H 1.07997 * 120.04551 * 180.02562 * 9 5 3 37 37 H 0.97006 * 119.99662 * 0.02562 * 13 11 10 38 38 H 1.08993 * 109.47662 * 299.99952 * 16 14 13 39 39 H 1.09002 * 109.47075 * 60.00457 * 16 14 13 40 40 H 1.09002 * 109.47153 * 60.00231 * 17 16 14 41 41 H 1.09001 * 109.47289 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47135 * 59.99436 * 23 22 20 43 43 H 1.08993 * 109.47378 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.46452 * 300.00468 * 23 22 20 45 45 H 1.08997 * 109.46641 * 90.00019 * 24 22 20 46 46 H 1.09005 * 109.46913 * 209.99938 * 24 22 20 47 47 H 1.09000 * 109.46875 * 329.99975 * 24 22 20 48 48 H 1.08996 * 109.46929 * 179.97438 * 25 18 17 49 49 H 1.09002 * 109.46716 * 60.00455 * 25 18 17 50 50 H 1.09002 * 109.47153 * 299.99641 * 26 25 18 51 51 H 1.09001 * 109.46832 * 179.97438 * 26 25 18 52 52 H 1.08003 * 120.03966 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2040 0.0000 4 8 1.5197 2.3778 0.0005 5 6 3.5912 1.2093 -0.0005 6 6 4.3386 2.5179 0.0000 7 8 4.2730 3.1034 1.3019 8 14 6.1195 2.2159 -0.4561 9 6 4.2859 0.0207 -0.0018 10 6 3.5917 -1.1922 -0.0021 11 6 4.3327 -2.4689 -0.0040 12 8 5.5485 -2.4662 -0.0050 13 7 3.6615 -3.6376 -0.0048 14 6 4.3969 -4.9047 -0.0062 15 1 5.3071 -4.7959 -0.5958 16 6 4.7621 -5.2838 1.4304 17 6 5.5296 -6.6074 1.4290 18 6 4.6542 -7.7040 0.8189 19 1 3.7440 -7.8124 1.4087 20 6 5.4100 -9.0078 0.8181 21 8 6.5375 -9.0554 1.2623 22 7 4.8325 -10.1211 0.3248 23 6 5.5669 -11.3888 0.3246 24 6 3.4702 -10.0637 -0.2112 25 6 4.2889 -7.3247 -0.6176 26 6 3.5214 -6.0012 -0.6162 27 6 2.1947 -1.1933 -0.0066 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.3222 2.7183 -0.8827 32 1 3.8874 3.1944 -0.7258 33 1 4.7337 3.9504 1.3759 34 1 6.8602 3.5025 -0.4901 35 1 6.7461 1.2950 0.5260 36 1 5.3659 0.0256 -0.0018 37 1 2.6914 -3.6398 -0.0044 38 1 5.3854 -4.5025 1.8652 39 1 3.8518 -5.3928 2.0201 40 1 6.4398 -6.4990 0.8393 41 1 5.7894 -6.8778 2.4525 42 1 5.8268 -11.6583 1.3482 43 1 4.9434 -12.1699 -0.1101 44 1 6.4774 -11.2809 -0.2650 45 1 3.5081 -9.8317 -1.2755 46 1 2.9820 -11.0276 -0.0666 47 1 2.9071 -9.2894 0.3098 48 1 3.6657 -8.1062 -1.0523 49 1 5.1992 -7.2163 -1.2074 50 1 2.6112 -6.1096 -0.0264 51 1 3.2616 -5.7308 -1.6397 52 1 1.6546 -2.1285 -0.0122 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_13287732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:33 Heat of formation + Delta-G solvation = -120.329257 kcal Electronic energy + Delta-G solvation = -33144.781284 eV Core-core repulsion = 28689.741692 eV Total energy + Delta-G solvation = -4455.039591 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.84343 -41.41278 -40.49975 -38.70925 -37.91895 -37.49000 -36.70637 -35.42119 -34.07799 -32.36491 -31.86435 -30.72580 -28.70068 -27.96093 -27.28336 -26.82345 -25.12927 -23.76105 -23.39224 -21.97753 -21.49573 -21.09847 -20.19410 -19.49682 -18.65415 -18.61281 -17.96409 -17.89021 -17.24509 -16.80717 -16.75602 -16.54772 -16.14491 -16.07085 -15.70916 -15.36672 -15.12788 -14.94778 -14.87884 -14.72682 -14.41794 -14.19786 -14.00850 -13.88464 -13.66357 -13.64118 -13.57177 -13.51216 -13.32805 -13.16917 -12.93085 -12.87480 -12.70748 -12.64868 -12.57261 -12.31349 -12.09223 -11.99085 -11.56032 -11.46834 -11.31940 -11.12275 -10.74535 -10.54263 -10.20037 -9.95120 -9.71389 -9.62487 -5.04964 -0.37470 0.07833 1.17601 1.46405 1.55044 1.62007 1.86313 1.98172 2.07585 2.55908 3.11498 3.30868 3.41173 3.58684 3.60326 3.65424 3.66949 3.74646 3.96333 4.02792 4.11313 4.13955 4.16078 4.29858 4.32328 4.35190 4.37905 4.42966 4.44696 4.47000 4.48206 4.62552 4.66488 4.73686 4.75857 4.82971 4.86632 4.87462 4.90161 4.96770 5.05935 5.06910 5.12683 5.14687 5.16122 5.24089 5.28105 5.31281 5.34627 5.46164 5.49483 5.63889 6.32323 6.47355 6.53520 6.78751 7.11309 7.14672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.120 4.120 3 C 0.158 3.842 4 O -0.495 6.495 5 C -0.120 4.120 6 C -0.062 4.062 7 O -0.553 6.553 8 Si 0.740 3.260 9 C -0.069 4.069 10 C -0.152 4.152 11 C 0.558 3.442 12 O -0.582 6.582 13 N -0.702 5.702 14 C 0.143 3.857 15 H 0.062 0.938 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.097 4.097 19 H 0.129 0.871 20 C 0.504 3.496 21 O -0.594 6.594 22 N -0.621 5.621 23 C 0.083 3.917 24 C 0.063 3.937 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.051 4.051 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.106 0.894 33 H 0.394 0.606 34 H -0.273 1.273 35 H -0.315 1.315 36 H 0.123 0.877 37 H 0.418 0.582 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.108 0.892 44 H 0.045 0.955 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.052 0.948 50 H 0.105 0.895 51 H 0.092 0.908 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.425 -2.214 -7.543 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.120 4.120 3 C 0.113 3.887 4 O -0.309 6.309 5 C -0.121 4.121 6 C -0.172 4.172 7 O -0.363 6.363 8 Si 0.647 3.353 9 C -0.087 4.087 10 C -0.155 4.155 11 C 0.346 3.654 12 O -0.463 6.463 13 N -0.354 5.354 14 C 0.038 3.962 15 H 0.080 0.920 16 C -0.160 4.160 17 C -0.132 4.132 18 C -0.117 4.117 19 H 0.147 0.853 20 C 0.293 3.707 21 O -0.474 6.474 22 N -0.354 5.354 23 C -0.059 4.059 24 C -0.078 4.078 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.070 4.070 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.274 0.726 32 H 0.123 0.877 33 H 0.245 0.755 34 H -0.200 1.200 35 H -0.244 1.244 36 H 0.141 0.859 37 H 0.257 0.743 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.130 0.870 49 H 0.070 0.930 50 H 0.123 0.877 51 H 0.110 0.890 52 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.505 -2.788 -6.397 13.456 hybrid contribution 0.707 1.028 0.792 1.478 sum -10.799 -1.760 -5.605 12.293 Atomic orbital electron populations 1.20770 0.87825 1.04096 1.03970 1.20475 0.98533 0.91562 1.01480 1.18428 0.88366 0.86171 0.95767 1.84730 1.75319 1.35568 1.35234 1.19645 0.93800 0.93800 1.04845 1.24599 1.09766 0.94490 0.88301 1.86590 1.77836 1.41509 1.30366 0.94388 0.73765 0.78390 0.88741 1.21065 1.00117 0.91447 0.96112 1.19796 0.94628 0.92324 1.08764 1.18421 0.86741 0.84769 0.75456 1.90800 1.15622 1.88164 1.51712 1.45787 1.11081 1.04401 1.74170 1.21064 0.96015 0.82927 0.96173 0.92012 1.21856 1.00977 0.95868 0.97281 1.21202 0.97721 0.93549 1.00731 1.21372 0.99870 0.90015 1.00489 0.85308 1.21346 0.86293 0.86659 0.76353 1.90698 1.21598 1.86622 1.48521 1.47965 1.17582 1.08806 1.61025 1.21706 0.97318 0.85295 1.01614 1.22385 0.80247 1.05225 0.99992 1.21768 1.01396 0.98869 0.93147 1.21769 0.98584 0.91609 1.03002 1.21397 0.91251 0.99322 0.95005 0.89048 0.89552 0.91424 0.72584 0.87669 0.75544 1.19976 1.24367 0.85936 0.74324 0.94093 0.89158 0.93757 0.92547 0.93504 0.87381 0.93609 0.90444 0.89245 0.88665 0.86958 0.92960 0.87699 0.88966 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.83 9.78 71.24 0.70 1.53 16 2 C -0.12 0.30 5.89 -19.81 -0.12 0.18 16 3 C 0.16 0.18 6.66 22.63 0.15 0.33 16 4 O -0.49 0.63 11.84 -90.37 -1.07 -0.44 16 5 C -0.12 -0.51 5.30 -19.81 -0.11 -0.62 16 6 C -0.06 -0.12 2.36 71.24 0.17 0.05 16 7 O -0.55 -3.16 12.86 -148.98 -1.92 -5.08 16 8 Si 0.74 2.47 30.20 68.60 2.07 4.54 16 9 C -0.07 -0.49 8.20 22.50 0.18 -0.31 16 10 C -0.15 -0.57 5.87 -20.08 -0.12 -0.68 16 11 C 0.56 3.62 7.73 86.72 0.67 4.29 16 12 O -0.58 -9.64 16.00 -3.97 -0.06 -9.71 16 13 N -0.70 1.62 5.03 -445.63 -2.24 -0.62 16 14 C 0.14 -0.16 2.46 44.99 0.11 -0.05 16 15 H 0.06 0.35 7.58 -2.39 -0.02 0.34 16 16 C -0.12 -0.19 5.49 30.59 0.17 -0.02 16 17 C -0.09 -0.41 4.49 30.60 0.14 -0.27 16 18 C -0.10 0.18 1.72 -11.54 -0.02 0.16 16 19 H 0.13 -1.00 7.40 -2.39 -0.02 -1.01 16 20 C 0.50 2.79 7.08 87.66 0.62 3.41 16 21 O -0.59 -9.89 15.98 -3.03 -0.05 -9.94 16 22 N -0.62 0.43 3.27 -871.88 -2.85 -2.42 16 23 C 0.08 -0.03 10.16 127.77 1.30 1.27 16 24 C 0.06 -0.66 8.77 127.77 1.12 0.46 16 25 C -0.11 0.77 4.84 30.59 0.15 0.92 16 26 C -0.11 1.07 5.39 30.59 0.16 1.24 16 27 C -0.05 0.18 9.18 22.50 0.21 0.39 16 28 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 29 H 0.09 -0.88 8.09 -2.39 -0.02 -0.90 16 30 H 0.07 -0.32 7.52 -2.38 -0.02 -0.34 16 31 H 0.41 -4.71 9.06 -74.06 -0.67 -5.38 16 32 H 0.11 -0.45 7.82 -2.38 -0.02 -0.47 16 33 H 0.39 -1.03 8.74 -74.06 -0.65 -1.68 16 34 H -0.27 -1.52 7.11 99.48 0.71 -0.82 16 35 H -0.31 -4.41 6.75 99.48 0.67 -3.74 16 36 H 0.12 1.32 4.47 -2.91 -0.01 1.31 16 37 H 0.42 -4.35 6.62 -92.70 -0.61 -4.96 16 38 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.04 0.45 8.10 -2.39 -0.02 0.43 16 41 H 0.06 0.43 8.10 -2.39 -0.02 0.41 16 42 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.11 -0.78 7.79 -2.39 -0.02 -0.80 16 44 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.08 -1.00 6.95 -2.39 -0.02 -1.02 16 46 H 0.09 -1.16 7.92 -2.38 -0.02 -1.18 16 47 H 0.09 -1.34 6.01 -2.39 -0.01 -1.35 16 48 H 0.11 -1.34 4.53 -2.39 -0.01 -1.35 16 49 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 50 H 0.10 -1.57 8.14 -2.39 -0.02 -1.59 16 51 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 52 H 0.17 -2.02 6.39 -2.91 -0.02 -2.04 16 Total: 0.00 -37.90 408.65 -1.59 -39.49 By element: Atomic # 1 Polarization: -27.14 SS G_CDS: -0.95 Total: -28.09 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 5.49 Total: 12.26 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -5.09 Total: -3.04 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -3.10 Total: -25.16 kcal Atomic # 14 Polarization: 2.47 SS G_CDS: 2.07 Total: 4.54 kcal Total: -37.90 -1.59 -39.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_13287732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.843 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds