Wall clock time and date at job start Sun Mar 7 2021 09:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37793 * 119.84774 * 2 1 4 4 C 1.39713 * 119.90474 * 180.27857 * 3 2 1 5 5 C 1.47535 * 120.19114 * 179.74327 * 4 3 2 6 6 O 1.21587 * 120.00052 * 179.72199 * 5 4 3 7 7 N 1.34779 * 119.99790 * 359.72482 * 5 4 3 8 8 C 1.46500 * 119.99793 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47092 * 34.99824 * 8 7 5 10 10 C 1.52997 * 109.47007 * 154.99772 * 8 7 5 11 11 C 1.52999 * 109.47317 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47159 * 300.00546 * 11 10 8 13 13 H 1.09002 * 109.46935 * 299.99411 * 12 11 10 14 14 C 1.50699 * 109.47155 * 179.97438 * 12 11 10 15 15 O 1.21285 * 120.00039 * 359.97438 * 14 12 11 16 16 N 1.34780 * 120.00249 * 179.97438 * 14 12 11 17 17 C 1.46500 * 120.00188 * 179.97438 * 16 14 12 18 18 C 1.46497 * 119.99724 * 0.02562 * 16 14 12 19 19 C 1.52997 * 109.47452 * 59.99536 * 12 11 10 20 20 C 1.53000 * 109.47023 * 274.99565 * 8 7 5 21 21 C 1.40137 * 119.61727 * 359.46816 * 4 3 2 22 22 O 1.35648 * 120.15049 * 180.23077 * 21 4 3 23 23 C 1.38714 * 119.69877 * 0.25500 * 21 4 3 24 24 C 1.50695 * 119.95498 * 180.02562 * 23 21 4 25 25 O 1.42898 * 109.47004 * 74.99907 * 24 23 21 26 26 Si 1.86302 * 109.47182 * 194.99740 * 24 23 21 27 27 C 1.38054 * 120.08319 * 359.97438 * 23 21 4 28 28 H 1.09003 * 109.46750 * 270.27968 * 1 2 3 29 29 H 1.09001 * 109.46987 * 30.27935 * 1 2 3 30 30 H 1.08999 * 109.47062 * 150.27775 * 1 2 3 31 31 H 1.07996 * 120.04884 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99983 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.47853 * 300.00060 * 10 8 7 34 34 H 1.09002 * 109.47153 * 60.00089 * 10 8 7 35 35 H 1.09002 * 109.46716 * 60.00091 * 11 10 8 36 36 H 1.09000 * 109.47486 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.46939 * 90.00082 * 17 16 14 38 38 H 1.08996 * 109.46904 * 210.00619 * 17 16 14 39 39 H 1.09004 * 109.46838 * 330.00307 * 17 16 14 40 40 H 1.08992 * 109.47431 * 89.99337 * 18 16 14 41 41 H 1.08997 * 109.46818 * 210.00149 * 18 16 14 42 42 H 1.09006 * 109.47071 * 329.99203 * 18 16 14 43 43 H 1.09002 * 109.46695 * 59.99734 * 19 12 11 44 44 H 1.08993 * 109.47194 * 179.97438 * 19 12 11 45 45 H 1.08992 * 109.47399 * 300.00063 * 20 8 7 46 46 H 1.09004 * 109.46724 * 60.00549 * 20 8 7 47 47 H 0.96695 * 114.00198 * 90.00278 * 22 21 4 48 48 H 1.09002 * 109.47321 * 315.00003 * 24 23 21 49 49 H 0.96702 * 114.00041 * 60.00008 * 25 24 23 50 50 H 1.48508 * 109.99613 * 58.68085 * 26 24 23 51 51 H 1.48499 * 109.99928 * 179.97438 * 26 24 23 52 52 H 1.07999 * 119.80499 * 179.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1952 0.0000 4 6 3.5900 1.1965 -0.0059 5 6 4.3306 2.4725 -0.0116 6 8 5.5465 2.4697 -0.0116 7 7 3.6594 3.6413 -0.0168 8 6 4.3948 4.9083 -0.0220 9 1 5.3055 4.7974 -0.6106 10 6 3.5204 6.0030 -0.6366 11 6 4.2881 7.3264 -0.6414 12 6 4.6520 7.7102 0.7943 13 1 3.7411 7.8208 1.3828 14 6 5.4088 9.0134 0.7895 15 8 5.6353 9.5792 -0.2590 16 7 5.8339 9.5501 1.9505 17 6 6.5701 10.8167 1.9457 18 6 5.5608 8.8663 3.2169 19 6 5.5264 6.6155 1.4090 20 6 4.7590 5.2924 1.4136 21 6 4.2838 -0.0210 -0.0005 22 8 5.6402 -0.0322 -0.0014 23 6 3.5771 -1.2146 0.0054 24 6 4.3173 -2.5273 0.0118 25 8 4.8550 -2.7645 1.3144 26 14 3.1446 -3.9038 -0.4361 27 6 2.1966 -1.2016 0.0063 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6512 2.1294 0.0004 32 1 2.6893 3.6435 -0.0172 33 1 3.2608 5.7295 -1.6592 34 1 2.6097 6.1139 -0.0479 35 1 5.1990 7.2158 -1.2298 36 1 3.6650 8.1064 -1.0789 37 1 5.8675 11.6456 2.0307 38 1 7.2613 10.8383 2.7882 39 1 7.1293 10.9084 1.0146 40 1 6.3785 8.1826 3.4444 41 1 5.4702 9.6029 4.0153 42 1 4.6302 8.3048 3.1334 43 1 6.4372 6.5049 0.8205 44 1 5.7860 6.8891 2.4316 45 1 3.8484 5.4032 2.0022 46 1 5.3820 4.5124 1.8514 47 1 6.0341 -0.0312 0.8817 48 1 5.1288 -2.4904 -0.7150 49 1 4.1879 -2.8096 2.0130 50 1 2.5543 -3.6524 -1.7754 51 1 3.8626 -5.2036 -0.4338 52 1 1.6510 -2.1336 0.0104 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_13422088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:00:59 Heat of formation + Delta-G solvation = -121.099107 kcal Electronic energy + Delta-G solvation = -33424.972920 eV Core-core repulsion = 28969.899945 eV Total energy + Delta-G solvation = -4455.072974 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88541 -41.43248 -40.25873 -38.61448 -38.02238 -37.60765 -36.71394 -35.32990 -33.11407 -32.95470 -31.90789 -30.88709 -28.75533 -27.51110 -27.25095 -26.75025 -25.32866 -23.80131 -23.48638 -22.01733 -21.49174 -21.12604 -20.20012 -19.62140 -18.38304 -18.13524 -17.93833 -17.43675 -17.21592 -16.84611 -16.80638 -16.66772 -16.13510 -16.00572 -15.63932 -15.41859 -15.15953 -14.96051 -14.85310 -14.79441 -14.37285 -14.31342 -14.22345 -13.89019 -13.66464 -13.63690 -13.54988 -13.36791 -13.24751 -13.15212 -12.86190 -12.74028 -12.61219 -12.53461 -12.34289 -12.18264 -12.13747 -12.08877 -11.72724 -11.54355 -11.35215 -11.00680 -10.76270 -10.42560 -10.24291 -9.98838 -9.72603 -9.48013 -5.06661 -0.32922 0.07930 1.24432 1.52774 1.62598 1.73295 1.93952 1.99726 2.08121 2.57019 3.19779 3.39345 3.43347 3.53826 3.58696 3.61506 3.64950 3.81420 3.97965 4.08659 4.10275 4.15323 4.20518 4.27077 4.29816 4.34053 4.40283 4.42501 4.43127 4.45036 4.55163 4.61381 4.63026 4.71396 4.78563 4.84973 4.85487 4.87247 4.95493 4.96115 5.01180 5.04120 5.11521 5.12649 5.19822 5.26144 5.29815 5.30395 5.44376 5.45171 5.48062 5.71215 6.29427 6.48606 6.69570 6.76090 7.08835 7.18193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.061 4.061 4 C -0.181 4.181 5 C 0.555 3.445 6 O -0.566 6.566 7 N -0.708 5.708 8 C 0.144 3.856 9 H 0.054 0.946 10 C -0.114 4.114 11 C -0.095 4.095 12 C -0.097 4.097 13 H 0.131 0.869 14 C 0.505 3.495 15 O -0.590 6.590 16 N -0.622 5.622 17 C 0.079 3.921 18 C 0.065 3.935 19 C -0.113 4.113 20 C -0.116 4.116 21 C 0.158 3.842 22 O -0.497 6.497 23 C -0.160 4.160 24 C -0.075 4.075 25 O -0.553 6.553 26 Si 0.796 3.204 27 C -0.071 4.071 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.402 0.598 48 H 0.090 0.910 49 H 0.396 0.604 50 H -0.285 1.285 51 H -0.300 1.300 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 -0.674 9.080 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.079 4.079 4 C -0.184 4.184 5 C 0.343 3.657 6 O -0.445 6.445 7 N -0.360 5.360 8 C 0.039 3.961 9 H 0.072 0.928 10 C -0.151 4.151 11 C -0.133 4.133 12 C -0.117 4.117 13 H 0.149 0.851 14 C 0.295 3.705 15 O -0.471 6.471 16 N -0.355 5.355 17 C -0.064 4.064 18 C -0.076 4.076 19 C -0.151 4.151 20 C -0.155 4.155 21 C 0.111 3.889 22 O -0.309 6.309 23 C -0.161 4.161 24 C -0.184 4.184 25 O -0.361 6.361 26 Si 0.701 3.299 27 C -0.088 4.088 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.261 0.739 48 H 0.107 0.893 49 H 0.246 0.754 50 H -0.212 1.212 51 H -0.229 1.229 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.450 -0.965 7.080 12.659 hybrid contribution 1.233 0.639 -0.179 1.400 sum -9.217 -0.327 6.900 11.518 Atomic orbital electron populations 1.20935 0.87699 1.04518 1.04208 1.20164 0.98279 0.91658 0.99195 1.21456 0.90790 1.00068 0.95633 1.20428 0.95209 0.92412 1.10382 1.18355 0.86916 0.84478 0.75956 1.90814 1.15143 1.87935 1.50630 1.45826 1.10923 1.04490 1.74780 1.21002 0.95281 0.82504 0.97272 0.92768 1.21746 0.98910 0.92195 1.02285 1.21238 1.00303 0.97063 0.94739 1.21372 1.00129 0.90684 0.99556 0.85139 1.21331 0.79056 0.87231 0.82896 1.90689 1.58797 1.64661 1.32917 1.47948 1.55816 1.24063 1.07672 1.21723 0.96652 0.84852 1.03141 1.22293 1.02791 0.98534 0.84020 1.21711 0.97478 0.93190 1.02706 1.21806 1.01494 0.96154 0.96020 1.18609 0.83450 0.91079 0.95728 1.84655 1.15739 1.96106 1.34380 1.20744 0.94954 0.94988 1.05429 1.25220 1.04058 1.00124 0.88952 1.86499 1.38674 1.94456 1.16504 0.94050 0.80364 0.72889 0.82644 1.21310 0.91671 0.99564 0.96278 0.89046 0.90107 0.90085 0.82073 0.74717 0.90679 0.87938 0.93628 0.91018 0.92217 0.88687 0.92951 0.91132 0.89207 0.88750 0.93685 0.88025 0.88517 0.92795 0.73878 0.89252 0.75434 1.21185 1.22855 0.81918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.40 10.00 71.24 0.71 2.12 16 2 C -0.09 0.59 5.87 -19.90 -0.12 0.47 16 3 C -0.06 0.28 9.18 22.52 0.21 0.49 16 4 C -0.18 -0.59 5.89 -20.01 -0.12 -0.71 16 5 C 0.55 3.64 7.73 86.69 0.67 4.31 16 6 O -0.57 -8.98 14.82 16.93 0.25 -8.73 16 7 N -0.71 1.03 5.03 -445.70 -2.24 -1.21 16 8 C 0.14 -0.03 2.46 44.99 0.11 0.08 16 9 H 0.05 0.42 7.58 -2.39 -0.02 0.40 16 10 C -0.11 0.50 5.39 30.59 0.16 0.66 16 11 C -0.09 -0.08 4.49 30.60 0.14 0.06 16 12 C -0.10 0.17 1.72 -11.54 -0.02 0.15 16 13 H 0.13 -1.03 7.40 -2.39 -0.02 -1.05 16 14 C 0.51 2.79 7.08 87.66 0.62 3.41 16 15 O -0.59 -9.11 15.56 -3.05 -0.05 -9.16 16 16 N -0.62 -0.21 3.27 -871.90 -2.85 -3.07 16 17 C 0.08 0.02 10.44 127.77 1.33 1.35 16 18 C 0.07 -0.53 8.80 127.77 1.12 0.59 16 19 C -0.11 0.28 4.84 30.58 0.15 0.43 16 20 C -0.12 0.34 5.49 30.58 0.17 0.50 16 21 C 0.16 1.01 6.69 22.84 0.15 1.16 16 22 O -0.50 -5.50 10.91 -68.71 -0.75 -6.25 16 23 C -0.16 -0.20 5.27 -19.80 -0.10 -0.30 16 24 C -0.07 -0.12 2.38 71.23 0.17 0.05 16 25 O -0.55 -0.50 12.88 -148.98 -1.92 -2.42 16 26 Si 0.80 -2.03 29.91 68.60 2.05 0.02 16 27 C -0.07 0.33 8.30 22.30 0.19 0.52 16 28 H 0.09 -1.28 8.14 -2.39 -0.02 -1.30 16 29 H 0.08 -1.07 8.08 -2.39 -0.02 -1.09 16 30 H 0.08 -1.04 8.08 -2.39 -0.02 -1.06 16 31 H 0.16 -1.89 6.40 -2.91 -0.02 -1.91 16 32 H 0.41 -3.63 6.63 -92.71 -0.61 -4.24 16 33 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.04 0.30 8.10 -2.39 -0.02 0.28 16 36 H 0.07 0.16 8.10 -2.39 -0.02 0.14 16 37 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.09 -0.47 8.07 -2.39 -0.02 -0.49 16 39 H 0.05 0.29 7.42 -2.38 -0.02 0.27 16 40 H 0.07 -0.65 6.95 -2.39 -0.02 -0.67 16 41 H 0.09 -0.97 8.07 -2.39 -0.02 -0.99 16 42 H 0.09 -1.09 6.01 -2.38 -0.01 -1.11 16 43 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.10 -0.66 4.53 -2.39 -0.01 -0.67 16 45 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 46 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.40 2.46 9.06 -74.06 -0.67 1.79 16 48 H 0.09 0.63 7.83 -2.39 -0.02 0.61 16 49 H 0.40 -3.44 8.70 -74.06 -0.64 -4.08 16 50 H -0.28 -0.67 7.11 99.48 0.71 0.04 16 51 H -0.30 -1.64 7.11 99.48 0.71 -0.93 16 52 H 0.16 -1.77 5.10 -2.91 -0.01 -1.78 16 Total: 0.00 -34.45 407.72 -0.88 -35.33 By element: Atomic # 1 Polarization: -18.93 SS G_CDS: -0.92 Total: -19.84 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.54 Total: 15.34 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -5.10 Total: -4.28 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -2.46 Total: -26.57 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: 2.05 Total: 0.02 kcal Total: -34.45 -0.88 -35.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_13422088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.774 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds