Wall clock time and date at job start Sun Mar 7 2021 09:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99786 * 2 1 4 4 C 1.34773 * 120.00577 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99584 * 5.10937 * 4 2 1 6 6 C 1.50697 * 120.00565 * 185.10856 * 4 2 1 7 7 H 1.09004 * 109.46793 * 32.74293 * 6 4 2 8 8 C 1.52999 * 109.47319 * 152.73970 * 6 4 2 9 9 C 1.53001 * 109.47212 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47162 * 300.00213 * 9 8 6 11 11 H 1.08996 * 109.47392 * 300.00050 * 10 9 8 12 12 N 1.46497 * 109.47301 * 179.97438 * 10 9 8 13 13 C 1.34768 * 120.00094 * 154.99891 * 12 10 9 14 14 O 1.21285 * 120.00516 * 0.02562 * 13 12 10 15 15 C 1.50710 * 120.00287 * 180.02562 * 13 12 10 16 16 C 1.50699 * 109.47337 * 180.02562 * 15 13 12 17 17 C 1.34853 * 125.89037 * 275.20015 * 16 15 13 18 18 C 1.40886 * 107.41608 * 180.25335 * 17 16 15 19 19 C 1.34850 * 107.41952 * 359.73735 * 18 17 16 20 20 C 1.50694 * 125.88962 * 180.02562 * 19 18 17 21 21 O 1.42896 * 109.47143 * 119.97435 * 20 19 18 22 22 Si 1.86299 * 109.47640 * 359.96999 * 20 19 18 23 23 N 1.36333 * 125.89042 * 94.99995 * 16 15 13 24 24 C 1.53005 * 109.47030 * 60.00010 * 10 9 8 25 25 C 1.52999 * 109.47106 * 272.74579 * 6 4 2 26 26 H 1.09002 * 109.47076 * 269.99792 * 1 2 3 27 27 H 1.09003 * 109.47653 * 29.99914 * 1 2 3 28 28 H 1.09002 * 109.47113 * 149.99818 * 1 2 3 29 29 H 1.08993 * 109.47042 * 185.25133 * 3 2 1 30 30 H 1.08996 * 109.47004 * 305.25232 * 3 2 1 31 31 H 1.09000 * 109.46780 * 65.25312 * 3 2 1 32 32 H 1.09004 * 109.46924 * 60.00403 * 8 6 4 33 33 H 1.08991 * 109.47442 * 300.00470 * 8 6 4 34 34 H 1.08997 * 109.47014 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46820 * 60.00372 * 9 8 6 36 36 H 0.97000 * 119.99718 * 335.00831 * 12 10 9 37 37 H 1.09003 * 109.46788 * 59.99944 * 15 13 12 38 38 H 1.08996 * 109.46689 * 300.00443 * 15 13 12 39 39 H 1.08005 * 126.29175 * 359.97438 * 17 16 15 40 40 H 1.08004 * 126.28930 * 179.73255 * 18 17 16 41 41 H 1.09004 * 109.46913 * 239.97150 * 20 19 18 42 42 H 0.96696 * 114.00190 * 299.99682 * 21 20 19 43 43 H 1.48502 * 109.99423 * 58.68396 * 22 20 19 44 44 H 1.48492 * 110.00209 * 180.02562 * 22 20 19 45 45 H 0.96996 * 125.64329 * 0.02562 * 23 16 15 46 46 H 1.09004 * 109.47198 * 59.99690 * 24 10 9 47 47 H 1.09004 * 109.46950 * 179.97438 * 24 10 9 48 48 H 1.09004 * 109.47061 * 299.99550 * 25 6 4 49 49 H 1.08997 * 109.47506 * 59.99777 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5362 -2.2153 -0.0945 6 6 3.6414 -1.1697 0.1157 7 1 3.9593 -0.3318 0.7362 8 6 4.1012 -2.4813 0.7554 9 6 5.6267 -2.4842 0.8728 10 6 6.2457 -2.3517 -0.5202 11 1 5.9274 -3.1895 -1.1404 12 7 7.7063 -2.3539 -0.4077 13 6 8.4619 -2.7483 -1.4517 14 8 7.9328 -3.1010 -2.4844 15 6 9.9645 -2.7511 -1.3359 16 6 10.5673 -3.2300 -2.6313 17 6 10.7628 -4.5168 -2.9843 18 6 11.3521 -4.5182 -4.2640 19 6 11.4889 -3.2324 -4.6468 20 6 12.0743 -2.7566 -5.9513 21 8 11.0946 -2.0002 -6.6654 22 14 12.5903 -4.2263 -6.9734 23 7 11.0056 -2.4373 -3.6502 24 6 5.7859 -1.0400 -1.1598 25 6 4.2609 -1.0368 -1.2770 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 3.2653 1.0718 -0.0941 30 1 1.8654 1.8800 -0.8392 31 1 2.0065 1.7985 0.9333 32 1 3.7833 -3.3192 0.1349 33 1 3.6599 -2.5760 1.7475 34 1 5.9542 -3.4188 1.3281 35 1 5.9449 -1.6463 1.4931 36 1 8.1296 -2.0716 0.4181 37 1 10.2653 -3.4167 -0.5267 38 1 10.3145 -1.7407 -1.1243 39 1 10.5174 -5.3864 -2.3926 40 1 11.6412 -5.3890 -4.8337 41 1 12.9434 -2.1295 -5.7523 42 1 10.2921 -2.4964 -6.8770 43 1 11.4204 -5.1058 -7.2248 44 1 13.1698 -3.7704 -8.2623 45 1 10.9818 -1.4677 -3.6624 46 1 6.1041 -0.2021 -0.5395 47 1 6.2272 -0.9454 -2.1520 48 1 3.9430 -1.8747 -1.8975 49 1 3.9334 -0.1024 -1.7327 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_14644196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:23 Heat of formation + Delta-G solvation = -65.239232 kcal Electronic energy + Delta-G solvation = -29203.261219 eV Core-core repulsion = 25132.092932 eV Total energy + Delta-G solvation = -4071.168287 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33009 -41.58336 -40.62807 -38.67323 -37.85181 -36.65690 -35.25018 -33.21835 -31.92365 -31.91531 -31.19528 -29.37094 -28.67291 -27.11028 -25.30887 -23.87773 -23.83053 -21.75717 -21.42025 -21.32766 -20.89409 -20.07951 -19.04543 -18.26721 -17.96975 -17.59569 -17.19362 -16.78332 -16.73828 -16.39772 -16.29386 -15.60007 -15.29439 -15.14756 -14.95273 -14.87807 -14.61017 -14.39047 -14.26749 -14.07680 -13.96204 -13.85359 -13.57607 -13.48922 -13.46732 -13.36400 -13.25171 -12.93758 -12.76143 -12.66373 -12.29527 -12.20164 -12.15933 -11.87281 -11.54725 -11.38400 -11.01007 -10.83694 -10.73968 -10.05519 -9.78747 -9.76327 -8.95300 -4.89003 1.08712 1.31201 1.48499 1.65700 1.66866 1.85464 1.93533 1.99693 2.32360 2.51830 3.36248 3.41120 3.57893 3.59274 3.71257 3.81443 3.95148 4.01127 4.10252 4.13643 4.24166 4.25441 4.29215 4.38664 4.39627 4.42866 4.44104 4.46247 4.52029 4.59288 4.66043 4.70204 4.77181 4.81133 4.84361 4.85016 4.96288 4.99801 5.08963 5.11616 5.23333 5.26466 5.29604 5.31782 5.43244 5.53483 5.98916 6.13735 6.27332 6.36993 6.57851 6.69872 7.06595 7.31843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.064 3.936 4 C 0.506 3.494 5 O -0.590 6.590 6 C -0.098 4.098 7 H 0.129 0.871 8 C -0.099 4.099 9 C -0.112 4.112 10 C 0.144 3.856 11 H 0.052 0.948 12 N -0.712 5.712 13 C 0.509 3.491 14 O -0.579 6.579 15 C -0.066 4.066 16 C 0.035 3.965 17 C -0.203 4.203 18 C -0.203 4.203 19 C -0.018 4.018 20 C -0.061 4.061 21 O -0.554 6.554 22 Si 0.797 3.203 23 N -0.535 5.535 24 C -0.116 4.116 25 C -0.101 4.101 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.420 0.580 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.129 0.871 42 H 0.385 0.615 43 H -0.294 1.294 44 H -0.296 1.296 45 H 0.419 0.581 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.042 0.958 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 7.067 7.799 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.356 5.356 3 C -0.078 4.078 4 C 0.295 3.705 5 O -0.470 6.470 6 C -0.119 4.119 7 H 0.147 0.853 8 C -0.138 4.138 9 C -0.149 4.149 10 C 0.039 3.961 11 H 0.070 0.930 12 N -0.364 5.364 13 C 0.296 3.704 14 O -0.458 6.458 15 C -0.106 4.106 16 C -0.079 4.079 17 C -0.227 4.227 18 C -0.228 4.228 19 C -0.132 4.132 20 C -0.169 4.169 21 O -0.361 6.361 22 Si 0.701 3.299 23 N -0.131 5.131 24 C -0.154 4.154 25 C -0.140 4.140 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.258 0.742 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.147 0.853 42 H 0.234 0.766 43 H -0.221 1.221 44 H -0.223 1.223 45 H 0.257 0.743 46 H 0.116 0.884 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.515 6.498 6.344 10.142 hybrid contribution -1.640 0.580 -0.261 1.759 sum 2.875 7.078 6.084 9.766 Atomic orbital electron populations 1.21712 0.79158 1.03291 1.02309 1.47982 1.07625 1.07239 1.72789 1.22216 0.98177 0.83709 1.03658 1.21350 0.91310 0.82934 0.74859 1.90687 1.71589 1.33245 1.51503 1.21428 0.89017 1.01901 0.99561 0.85287 1.21304 0.95760 0.95740 1.00976 1.21728 0.93578 1.04610 0.95029 1.20904 0.79726 0.97745 0.97723 0.92972 1.45896 1.06257 1.67453 1.16830 1.21082 0.90396 0.75842 0.83057 1.90764 1.75440 1.48618 1.31019 1.20269 0.89237 1.06577 0.94557 1.19941 1.05189 0.90652 0.92110 1.20844 1.07675 0.96089 0.98085 1.20900 1.07805 0.95642 0.98420 1.20885 1.08113 0.91014 0.93184 1.24977 0.93713 1.07294 0.90921 1.86528 1.31158 1.42014 1.76434 0.93451 0.83993 0.75099 0.77342 1.41856 1.48428 1.09117 1.13686 1.21800 0.94095 0.98323 1.01217 1.21396 0.95549 1.02550 0.94485 0.92146 0.88754 0.92871 0.88446 0.90489 0.90400 0.93420 0.90854 0.90264 0.87914 0.74228 0.83811 0.85060 0.84342 0.83339 0.85340 0.76594 1.22125 1.22347 0.74313 0.88447 0.93202 0.93891 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.02 10.52 127.77 1.34 1.37 16 2 N -0.62 -0.28 3.27 -871.90 -2.85 -3.13 16 3 C 0.06 -0.52 10.26 127.77 1.31 0.79 16 4 C 0.51 2.82 6.75 87.66 0.59 3.42 16 5 O -0.59 -9.31 15.68 -3.04 -0.05 -9.36 16 6 C -0.10 0.19 1.65 -11.54 -0.02 0.17 16 7 H 0.13 -1.13 6.55 -2.38 -0.02 -1.15 16 8 C -0.10 0.04 4.76 30.59 0.15 0.18 16 9 C -0.11 0.68 5.39 30.60 0.16 0.85 16 10 C 0.14 -0.27 2.46 44.99 0.11 -0.16 16 11 H 0.05 0.34 7.58 -2.39 -0.02 0.32 16 12 N -0.71 3.91 5.08 -442.53 -2.25 1.66 16 13 C 0.51 0.42 7.79 87.66 0.68 1.10 16 14 O -0.58 -7.27 15.70 -3.04 -0.05 -7.32 16 15 C -0.07 0.37 6.24 29.10 0.18 0.55 16 16 C 0.04 0.08 5.66 41.08 0.23 0.31 16 17 C -0.20 -1.10 10.76 22.14 0.24 -0.86 16 18 C -0.20 -1.03 9.37 22.14 0.21 -0.82 16 19 C -0.02 -0.07 6.51 41.08 0.27 0.20 16 20 C -0.06 -0.09 3.08 71.23 0.22 0.13 16 21 O -0.55 -2.73 12.88 -148.98 -1.92 -4.65 16 22 Si 0.80 0.27 30.59 68.60 2.10 2.37 16 23 N -0.54 -1.14 6.07 -171.12 -1.04 -2.18 16 24 C -0.12 0.35 5.49 30.58 0.17 0.52 16 25 C -0.10 0.11 4.96 30.58 0.15 0.27 16 26 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 27 H 0.09 -0.45 8.07 -2.39 -0.02 -0.47 16 28 H 0.05 0.30 7.36 -2.39 -0.02 0.28 16 29 H 0.10 -1.09 4.79 -2.39 -0.01 -1.10 16 30 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.08 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H 0.05 0.30 7.86 -2.38 -0.02 0.28 16 33 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.10 -1.21 8.14 -2.38 -0.02 -1.23 16 36 H 0.42 -5.55 8.60 -92.71 -0.80 -6.35 16 37 H 0.14 -1.54 8.14 -2.39 -0.02 -1.56 16 38 H 0.13 -1.56 8.14 -2.39 -0.02 -1.58 16 39 H 0.14 0.51 8.06 -2.91 -0.02 0.48 16 40 H 0.15 0.30 6.22 -2.91 -0.02 0.28 16 41 H 0.13 -0.21 7.96 -2.38 -0.02 -0.23 16 42 H 0.38 0.63 8.70 -74.06 -0.64 -0.01 16 43 H -0.29 -1.89 7.11 99.48 0.71 -1.18 16 44 H -0.30 -1.93 7.11 99.48 0.71 -1.23 16 45 H 0.42 -0.65 8.96 -92.71 -0.83 -1.48 16 46 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 47 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.04 0.24 8.14 -2.38 -0.02 0.22 16 49 H 0.08 -0.31 7.32 -2.39 -0.02 -0.33 16 Total: 0.00 -32.28 392.74 -1.31 -33.59 By element: Atomic # 1 Polarization: -17.74 SS G_CDS: -1.25 Total: -18.99 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.00 Total: 8.01 kcal Atomic # 7 Polarization: 2.48 SS G_CDS: -6.14 Total: -3.66 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -2.01 Total: -21.33 kcal Atomic # 14 Polarization: 0.27 SS G_CDS: 2.10 Total: 2.37 kcal Total: -32.28 -1.31 -33.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_14644196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.645 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds