Wall clock time and date at job start Sun Mar 7 2021 09:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 120.00270 * 2 1 4 4 C 1.34776 * 119.99488 * 179.97438 * 2 1 3 5 5 O 1.21280 * 120.00482 * 0.02562 * 4 2 1 6 6 C 1.50705 * 119.99569 * 179.72512 * 4 2 1 7 7 H 1.08998 * 109.46932 * 60.27852 * 6 4 2 8 8 C 1.53006 * 109.46912 * 180.27684 * 6 4 2 9 9 C 1.52999 * 109.46816 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47538 * 300.00187 * 9 8 6 11 11 H 1.09000 * 109.46468 * 300.00062 * 10 9 8 12 12 N 1.46500 * 109.47214 * 180.02562 * 10 9 8 13 13 C 1.34769 * 119.99995 * 154.99756 * 12 10 9 14 14 O 1.21285 * 119.99890 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00129 * 180.02562 * 13 12 10 16 16 C 1.53043 * 109.33157 * 143.84173 * 15 13 12 17 17 C 1.53541 * 108.55959 * 169.82769 * 16 15 13 18 18 N 1.47025 * 107.66359 * 299.04876 * 17 16 15 19 19 C 1.38926 * 118.87878 * 43.66494 * 18 17 16 20 20 C 1.31113 * 121.85319 * 346.68109 * 19 18 17 21 21 C 1.50695 * 118.54672 * 180.42798 * 20 19 18 22 22 O 1.42898 * 109.47111 * 99.90578 * 21 20 19 23 23 Si 1.86303 * 109.47428 * 339.90029 * 21 20 19 24 24 C 1.53002 * 109.46796 * 59.99775 * 10 9 8 25 25 C 1.52996 * 109.47313 * 300.00021 * 24 10 9 26 26 H 1.08999 * 109.47048 * 240.00288 * 1 2 3 27 27 H 1.09003 * 109.46831 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47144 * 119.99842 * 1 2 3 29 29 H 1.09000 * 109.46921 * 270.00241 * 3 2 1 30 30 H 1.09004 * 109.47182 * 29.99775 * 3 2 1 31 31 H 1.09000 * 109.47158 * 149.99788 * 3 2 1 32 32 H 1.08997 * 109.46922 * 300.00361 * 8 6 4 33 33 H 1.08998 * 109.46682 * 60.00160 * 8 6 4 34 34 H 1.08998 * 109.46789 * 60.00314 * 9 8 6 35 35 H 1.08998 * 109.47026 * 179.97438 * 9 8 6 36 36 H 0.96997 * 119.99763 * 335.00222 * 12 10 9 37 37 H 1.08997 * 109.32560 * 24.18059 * 15 13 12 38 38 H 1.09000 * 109.61980 * 289.55074 * 16 15 13 39 39 H 1.09002 * 109.61929 * 50.10477 * 16 15 13 40 40 H 1.09002 * 109.82199 * 58.59099 * 17 16 15 41 41 H 1.08996 * 109.81497 * 179.50489 * 17 16 15 42 42 H 0.96996 * 120.55955 * 223.64463 * 18 17 16 43 43 H 1.08007 * 119.07107 * 166.68988 * 19 18 17 44 44 H 1.09000 * 109.47487 * 219.90246 * 21 20 19 45 45 H 0.96705 * 113.99584 * 299.99574 * 22 21 20 46 46 H 1.48500 * 110.00122 * 179.97438 * 23 21 20 47 47 H 1.48498 * 109.99997 * 301.32127 * 23 21 20 48 48 H 1.09000 * 109.46875 * 60.01007 * 24 10 9 49 49 H 1.09006 * 109.46338 * 179.97438 * 24 10 9 50 50 H 1.08998 * 109.47068 * 300.00135 * 25 24 10 51 51 H 1.09002 * 109.46632 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6458 -1.1673 -0.0057 7 1 4.0129 -0.6553 0.8838 8 6 4.1558 -2.6099 -0.0107 9 6 5.6858 -2.6099 -0.0177 10 6 6.1901 -1.8863 -1.2679 11 1 5.8227 -2.3985 -2.1571 12 7 7.6551 -1.8869 -1.2749 13 6 8.3235 -1.7831 -2.4405 14 8 7.7121 -1.6888 -3.4838 15 6 9.8305 -1.7843 -2.4478 16 6 10.3306 -2.5292 -3.6876 17 6 11.8438 -2.3033 -3.8162 18 7 12.0675 -0.8587 -3.9731 19 6 11.3607 0.0216 -3.1635 20 6 10.3286 -0.3673 -2.4544 21 6 9.6103 0.6527 -1.6091 22 8 8.4313 1.0891 -2.2884 23 14 10.7304 2.1110 -1.3095 24 6 5.6801 -0.4438 -1.2629 25 6 4.1502 -0.4438 -1.2560 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 2.3792 1.5833 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 3.7960 -3.1254 0.8797 33 1 3.7887 -3.1218 -0.9002 34 1 6.0531 -2.0977 0.8716 35 1 6.0490 -3.6375 -0.0208 36 1 8.1440 -1.9620 -0.4405 37 1 10.1951 -2.2880 -1.5526 38 1 10.1272 -3.5948 -3.5813 39 1 9.8264 -2.1442 -4.5740 40 1 12.3484 -2.6601 -2.9182 41 1 12.2236 -2.8333 -4.6896 42 1 12.6982 -0.5259 -4.6307 43 1 11.6700 1.0554 -3.1169 44 1 9.3346 0.2043 -0.6546 45 1 8.6015 1.4994 -3.1474 46 1 10.0333 3.1243 -0.4774 47 1 11.9743 1.6652 -0.6319 48 1 6.0476 0.0684 -0.3736 49 1 6.0399 0.0718 -2.1534 50 1 3.7828 -0.9559 -2.1452 51 1 3.7870 0.5839 -1.2528 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_15608500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:30 Heat of formation + Delta-G solvation = -83.561140 kcal Electronic energy + Delta-G solvation = -31529.389185 eV Core-core repulsion = 27430.114921 eV Total energy + Delta-G solvation = -4099.274263 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69176 -41.17217 -39.53888 -38.34589 -37.33573 -36.73489 -35.13180 -33.45421 -32.61980 -31.87736 -30.99184 -28.78366 -27.45967 -26.89885 -25.84825 -23.76819 -23.72803 -23.06633 -21.46846 -21.22933 -20.21299 -19.17765 -18.87387 -18.08099 -17.87173 -17.36884 -17.16051 -17.00327 -16.79923 -16.41196 -15.67034 -15.59182 -15.46417 -15.12783 -14.93847 -14.85299 -14.62145 -14.43659 -14.31937 -14.01487 -13.88617 -13.79099 -13.64741 -13.56053 -13.33957 -13.18366 -13.13155 -12.71274 -12.63514 -12.52058 -12.30410 -12.18968 -12.09835 -11.91449 -11.72442 -11.50609 -11.32591 -11.26973 -10.84237 -10.53294 -10.08781 -9.91077 -9.74402 -8.36883 -4.93696 1.36185 1.46445 1.51530 1.70801 1.91649 2.00863 2.05674 2.34128 2.72937 3.42922 3.60769 3.63771 3.69216 3.81632 3.90895 4.01052 4.06015 4.11514 4.15562 4.22266 4.29089 4.32902 4.39100 4.39695 4.41400 4.43934 4.46785 4.48973 4.62261 4.65471 4.67075 4.71500 4.79414 4.80397 4.83914 4.86721 4.88049 5.00571 5.06831 5.15356 5.18691 5.25829 5.29471 5.34940 5.41399 5.44967 5.54293 5.67107 6.27663 6.38387 6.69972 6.93233 7.03896 7.07305 7.45729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.623 5.623 3 C 0.066 3.934 4 C 0.506 3.494 5 O -0.588 6.588 6 C -0.097 4.097 7 H 0.123 0.877 8 C -0.093 4.093 9 C -0.114 4.114 10 C 0.149 3.851 11 H 0.053 0.947 12 N -0.716 5.716 13 C 0.538 3.462 14 O -0.579 6.579 15 C -0.037 4.037 16 C -0.124 4.124 17 C 0.123 3.877 18 N -0.747 5.747 19 C 0.161 3.839 20 C -0.296 4.296 21 C -0.047 4.047 22 O -0.552 6.552 23 Si 0.758 3.242 24 C -0.108 4.108 25 C -0.111 4.111 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.407 0.593 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.414 0.586 43 H 0.157 0.843 44 H 0.096 0.904 45 H 0.383 0.617 46 H -0.306 1.306 47 H -0.290 1.290 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.046 0.954 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 5.456 0.881 9.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.355 5.355 3 C -0.076 4.076 4 C 0.296 3.704 5 O -0.468 6.468 6 C -0.118 4.118 7 H 0.140 0.860 8 C -0.131 4.131 9 C -0.152 4.152 10 C 0.044 3.956 11 H 0.072 0.928 12 N -0.367 5.367 13 C 0.326 3.674 14 O -0.458 6.458 15 C -0.059 4.059 16 C -0.163 4.163 17 C -0.001 4.001 18 N -0.378 5.378 19 C 0.039 3.961 20 C -0.308 4.308 21 C -0.159 4.159 22 O -0.358 6.358 23 Si 0.665 3.335 24 C -0.146 4.146 25 C -0.150 4.150 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.250 0.750 43 H 0.173 0.827 44 H 0.114 0.886 45 H 0.232 0.768 46 H -0.235 1.235 47 H -0.217 1.217 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.639 5.093 1.281 8.465 hybrid contribution -0.298 -0.676 0.316 0.804 sum 6.341 4.417 1.597 7.891 Atomic orbital electron populations 1.21720 0.78905 1.03949 1.01307 1.47965 1.07629 1.07137 1.72786 1.22310 0.98149 0.83954 1.03157 1.21289 0.91312 0.82938 0.74903 1.90681 1.71547 1.32903 1.51706 1.21361 0.89309 0.99136 1.01977 0.85966 1.21218 0.94897 0.94588 1.02428 1.21739 0.94582 1.01377 0.97538 1.20850 0.79797 0.96532 0.98375 0.92834 1.45976 1.06738 1.74738 1.09226 1.20642 0.90201 0.73546 0.83046 1.90646 1.70809 1.50886 1.33455 1.19692 0.90215 0.95585 1.00392 1.21757 0.97178 1.00134 0.97253 1.21623 0.93957 0.81685 1.02858 1.44651 1.46925 1.04804 1.41404 1.20611 0.90714 0.94612 0.90180 1.20482 1.02175 0.95662 1.12444 1.24767 0.92927 1.01745 0.96416 1.86476 1.31113 1.80993 1.37251 0.94187 0.75263 0.76659 0.87361 1.21702 0.93738 0.96005 1.03173 1.21722 0.96092 1.01785 0.95360 0.93090 0.87550 0.93486 0.91090 0.88993 0.89267 0.91301 0.93312 0.89100 0.90689 0.75685 0.88738 0.90572 0.92212 0.91449 0.88481 0.74971 0.82673 0.88611 0.76823 1.23500 1.21733 0.90384 0.91875 0.93557 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.13 10.16 127.77 1.30 1.42 16 2 N -0.62 -1.46 3.27 -871.89 -2.85 -4.31 16 3 C 0.07 -0.38 8.77 127.77 1.12 0.74 16 4 C 0.51 3.90 7.08 87.66 0.62 4.52 16 5 O -0.59 -10.05 15.98 -3.03 -0.05 -10.10 16 6 C -0.10 -0.13 1.72 -11.54 -0.02 -0.15 16 7 H 0.12 -0.44 7.41 -2.39 -0.02 -0.46 16 8 C -0.09 -0.32 4.49 30.60 0.14 -0.18 16 9 C -0.11 0.13 5.39 30.59 0.16 0.29 16 10 C 0.15 0.37 2.45 44.99 0.11 0.48 16 11 H 0.05 0.50 7.58 -2.39 -0.02 0.49 16 12 N -0.72 -0.59 5.08 -442.53 -2.25 -2.84 16 13 C 0.54 2.88 5.02 87.66 0.44 3.32 16 14 O -0.58 -8.28 15.75 -3.04 -0.05 -8.32 16 15 C -0.04 -0.01 2.69 -12.43 -0.03 -0.04 16 16 C -0.12 -0.01 5.31 30.79 0.16 0.15 16 17 C 0.12 -0.64 7.16 86.46 0.62 -0.02 16 18 N -0.75 4.40 5.83 -345.90 -2.02 2.39 16 19 C 0.16 -0.77 9.60 83.42 0.80 0.03 16 20 C -0.30 0.51 4.97 -16.76 -0.08 0.43 16 21 C -0.05 0.10 2.17 71.23 0.15 0.25 16 22 O -0.55 -0.17 11.35 -148.98 -1.69 -1.86 16 23 Si 0.76 -2.73 29.88 68.60 2.05 -0.68 16 24 C -0.11 -0.14 5.50 30.59 0.17 0.03 16 25 C -0.11 -0.08 4.84 30.59 0.15 0.07 16 26 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.11 -0.54 7.79 -2.39 -0.02 -0.56 16 28 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.07 -0.48 6.94 -2.39 -0.02 -0.50 16 30 H 0.09 -0.83 7.92 -2.38 -0.02 -0.85 16 31 H 0.09 -0.72 6.02 -2.39 -0.01 -0.73 16 32 H 0.07 0.33 8.10 -2.39 -0.02 0.31 16 33 H 0.05 0.41 8.10 -2.39 -0.02 0.39 16 34 H 0.09 -0.47 8.14 -2.39 -0.02 -0.48 16 35 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.41 -1.80 8.57 -92.71 -0.79 -2.59 16 37 H 0.09 -0.29 8.10 -2.39 -0.02 -0.31 16 38 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.06 0.35 7.51 -2.39 -0.02 0.34 16 40 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 41 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.41 -4.13 8.96 -92.71 -0.83 -4.96 16 43 H 0.16 -1.57 4.82 -2.91 -0.01 -1.58 16 44 H 0.10 -0.15 7.96 -2.39 -0.02 -0.17 16 45 H 0.38 -1.71 8.70 -74.05 -0.64 -2.35 16 46 H -0.31 -1.41 7.11 99.48 0.71 -0.71 16 47 H -0.29 -0.45 7.11 99.48 0.71 0.26 16 48 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.06 0.41 7.64 -2.38 -0.02 0.40 16 50 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 51 H 0.10 -0.28 4.52 -2.39 -0.01 -0.29 16 Total: 0.00 -27.32 388.58 -2.32 -29.63 By element: Atomic # 1 Polarization: -14.00 SS G_CDS: -1.27 Total: -15.27 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 5.81 Total: 11.36 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -7.12 Total: -4.76 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.79 Total: -20.29 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.05 Total: -0.68 kcal Total: -27.32 -2.32 -29.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_15608500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.926 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds