Wall clock time and date at job start Sun Mar 7 2021 09:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99939 * 359.97438 * 4 2 1 6 6 C 1.50696 * 119.99966 * 180.02562 * 4 2 1 7 7 H 1.09004 * 109.47246 * 300.00009 * 6 4 2 8 8 C 1.53004 * 109.47467 * 60.00047 * 6 4 2 9 9 C 1.52996 * 109.47232 * 180.02562 * 8 6 4 10 10 C 1.52998 * 109.47089 * 299.99513 * 9 8 6 11 11 H 1.09001 * 109.47466 * 300.00147 * 10 9 8 12 12 N 1.46496 * 109.47312 * 180.02562 * 10 9 8 13 13 C 1.34779 * 119.99865 * 84.99803 * 12 10 9 14 14 O 1.21278 * 119.99936 * 0.02562 * 13 12 10 15 15 C 1.50706 * 120.00149 * 180.02562 * 13 12 10 16 16 C 1.52992 * 109.47447 * 180.02562 * 15 13 12 17 17 O 1.42895 * 109.47644 * 180.02562 * 16 15 13 18 18 C 1.35897 * 117.00426 * 180.02562 * 17 16 15 19 19 C 1.38712 * 120.05794 * 179.72324 * 18 17 16 20 20 C 1.38162 * 119.94513 * 179.76125 * 19 18 17 21 21 C 1.50701 * 119.97386 * 180.23198 * 20 19 18 22 22 O 1.42900 * 109.47291 * 300.25770 * 21 20 19 23 23 Si 1.86300 * 109.47147 * 180.25595 * 21 20 19 24 24 C 1.38240 * 120.05487 * 0.48968 * 20 19 18 25 25 C 1.38288 * 120.11176 * 359.76222 * 24 20 19 26 26 C 1.38122 * 120.05848 * 0.02562 * 25 24 20 27 27 C 1.53000 * 109.46862 * 60.00475 * 10 9 8 28 28 C 1.52998 * 109.47192 * 179.97438 * 6 4 2 29 29 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 30 30 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 31 31 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 32 32 H 1.08995 * 109.47445 * 89.99576 * 3 2 1 33 33 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 34 34 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 35 35 H 1.09001 * 109.46709 * 300.00161 * 8 6 4 36 36 H 1.08999 * 109.47271 * 59.99437 * 8 6 4 37 37 H 1.09002 * 109.47114 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.47087 * 59.99892 * 9 8 6 39 39 H 0.97001 * 120.00371 * 265.00344 * 12 10 9 40 40 H 1.08998 * 109.47245 * 300.00577 * 15 13 12 41 41 H 1.09006 * 109.46944 * 60.00066 * 15 13 12 42 42 H 1.08998 * 109.47044 * 300.00302 * 16 15 13 43 43 H 1.09006 * 109.47320 * 59.99898 * 16 15 13 44 44 H 1.08003 * 120.02292 * 359.97438 * 19 18 17 45 45 H 1.09004 * 109.46677 * 60.25670 * 21 20 19 46 46 H 0.96705 * 113.99835 * 300.00252 * 22 21 20 47 47 H 1.48500 * 109.99873 * 180.02562 * 23 21 20 48 48 H 1.48496 * 109.99932 * 301.31878 * 23 21 20 49 49 H 1.08000 * 119.94775 * 179.74782 * 24 20 19 50 50 H 1.08004 * 119.97084 * 179.97438 * 25 24 20 51 51 H 1.07994 * 120.03127 * 180.02562 * 26 25 24 52 52 H 1.09001 * 109.46885 * 179.97438 * 27 10 9 53 53 H 1.08996 * 109.47699 * 59.99924 * 27 10 9 54 54 H 1.08993 * 109.47617 * 300.00068 * 28 6 4 55 55 H 1.09007 * 109.47318 * 60.00356 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5325 -2.2175 0.0015 6 6 3.6459 -1.1671 0.0011 7 1 4.0096 -0.6535 -0.8889 8 6 4.1555 -0.4456 1.2504 9 6 5.6855 -0.4450 1.2506 10 6 6.1960 -1.8873 1.2509 11 1 5.8327 -2.4012 2.1409 12 7 7.6609 -1.8868 1.2517 13 6 8.3341 -1.7849 2.4149 14 8 7.7271 -1.6939 3.4609 15 6 9.8412 -1.7838 2.4158 16 6 10.3503 -1.6586 3.8530 17 8 11.7793 -1.6570 3.8539 18 6 12.3955 -1.5522 5.0605 19 6 13.7806 -1.5501 5.1355 20 6 14.4047 -1.4385 6.3630 21 6 15.9095 -1.4308 6.4447 22 8 16.4223 -2.6487 5.9007 23 14 16.4339 -1.2769 8.2257 24 6 13.6499 -1.3392 7.5170 25 6 12.2689 -1.3464 7.4454 26 6 11.6402 -1.4533 6.2203 27 6 5.6865 -2.6089 0.0016 28 6 4.1559 -2.6096 0.0023 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 2.3791 1.5835 1.0276 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0284 -0.5139 35 1 3.7921 0.5821 1.2500 36 1 3.7918 -0.9591 2.1404 37 1 6.0485 0.0694 2.1404 38 1 6.0487 0.0689 0.3606 39 1 8.1465 -1.9599 0.4152 40 1 10.2054 -2.7147 1.9814 41 1 10.2042 -0.9415 1.8267 42 1 9.9860 -0.7278 4.2877 43 1 9.9872 -2.5011 4.4418 44 1 14.3706 -1.6321 4.2346 45 1 16.2998 -0.5863 5.8767 46 1 16.1157 -3.4436 6.3581 47 1 17.9159 -1.2675 8.3197 48 1 15.8804 -0.0300 8.8122 49 1 14.1396 -1.2562 8.4760 50 1 11.6815 -1.2692 8.3485 51 1 10.5616 -1.4585 6.1649 52 1 6.0505 -3.6363 0.0016 53 1 6.0497 -2.0951 -0.8884 54 1 3.7923 -3.1229 0.8924 55 1 3.7930 -3.1241 -0.8876 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_4549614.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:01:51 Heat of formation + Delta-G solvation = -116.148990 kcal Electronic energy + Delta-G solvation = -33768.063096 eV Core-core repulsion = 29157.667156 eV Total energy + Delta-G solvation = -4610.395940 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.68049 -41.34753 -40.78713 -39.20876 -38.63197 -37.26147 -36.71491 -35.30233 -33.40196 -32.46135 -31.90625 -31.32546 -30.55632 -28.75702 -27.32586 -26.96433 -25.50252 -23.78990 -23.70038 -23.59335 -22.03201 -21.49188 -21.08241 -20.19670 -19.34558 -18.19345 -17.96058 -17.71799 -17.53370 -17.48599 -17.10495 -17.07904 -16.80321 -16.74056 -16.21978 -15.97991 -15.56752 -15.32900 -15.17243 -14.93560 -14.89989 -14.73688 -14.49332 -14.25360 -14.20840 -14.04375 -13.86789 -13.64862 -13.53548 -13.35641 -13.22571 -13.14568 -12.91430 -12.84312 -12.73791 -12.60801 -12.36564 -12.32434 -12.12097 -11.99503 -11.81942 -11.62934 -11.53324 -11.33901 -11.07006 -10.75172 -10.50457 -10.09375 -9.93049 -9.72832 -9.28010 -4.97692 0.19070 0.38272 1.30515 1.52811 1.53808 1.65310 1.70760 1.97307 2.02588 2.48691 2.66114 3.41734 3.50725 3.55417 3.60490 3.62843 3.66194 3.84571 3.88810 3.95752 4.01162 4.08807 4.10300 4.12677 4.22707 4.27670 4.27896 4.30871 4.36268 4.40470 4.42260 4.43842 4.45625 4.50537 4.60485 4.63996 4.67958 4.71554 4.76513 4.79373 4.85518 4.87287 4.97044 4.97989 5.05764 5.12466 5.14030 5.25155 5.26417 5.31852 5.37257 5.43132 5.44444 5.49800 5.69596 6.29338 6.32276 6.49370 6.75918 7.08774 7.18599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.065 3.935 4 C 0.505 3.495 5 O -0.589 6.589 6 C -0.097 4.097 7 H 0.128 0.872 8 C -0.113 4.113 9 C -0.118 4.118 10 C 0.142 3.858 11 H 0.059 0.941 12 N -0.710 5.710 13 C 0.520 3.480 14 O -0.583 6.583 15 C -0.133 4.133 16 C 0.074 3.926 17 O -0.324 6.324 18 C 0.117 3.883 19 C -0.141 4.141 20 C -0.084 4.084 21 C -0.078 4.078 22 O -0.555 6.555 23 Si 0.785 3.215 24 C -0.158 4.158 25 C -0.075 4.075 26 C -0.212 4.212 27 C -0.114 4.114 28 C -0.095 4.095 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.419 0.581 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.396 0.604 47 H -0.298 1.298 48 H -0.284 1.284 49 H 0.148 0.852 50 H 0.153 0.847 51 H 0.136 0.864 52 H 0.076 0.924 53 H 0.098 0.902 54 H 0.048 0.952 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 3.731 -2.563 4.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C -0.076 4.076 4 C 0.294 3.706 5 O -0.470 6.470 6 C -0.118 4.118 7 H 0.145 0.855 8 C -0.151 4.151 9 C -0.157 4.157 10 C 0.038 3.962 11 H 0.078 0.922 12 N -0.362 5.362 13 C 0.307 3.693 14 O -0.463 6.463 15 C -0.172 4.172 16 C -0.001 4.001 17 O -0.238 6.238 18 C 0.072 3.928 19 C -0.160 4.160 20 C -0.084 4.084 21 C -0.187 4.187 22 O -0.363 6.363 23 Si 0.690 3.310 24 C -0.175 4.175 25 C -0.093 4.093 26 C -0.230 4.230 27 C -0.152 4.152 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.257 0.743 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.145 0.855 45 H 0.125 0.875 46 H 0.246 0.754 47 H -0.226 1.226 48 H -0.211 1.211 49 H 0.165 0.835 50 H 0.170 0.830 51 H 0.154 0.846 52 H 0.095 0.905 53 H 0.116 0.884 54 H 0.066 0.934 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.517 4.129 -1.862 4.559 hybrid contribution -0.577 0.150 -0.714 0.930 sum -0.061 4.279 -2.576 4.995 Atomic orbital electron populations 1.21725 0.79138 1.03288 1.02221 1.47950 1.07575 1.07201 1.72800 1.22286 0.98195 0.83954 1.03177 1.21346 0.91455 0.82938 0.74833 1.90688 1.71534 1.32934 1.51835 1.21373 0.89133 0.99186 1.02100 0.85461 1.21720 0.95728 1.02077 0.95592 1.21830 0.94504 0.96078 1.03275 1.20993 0.79221 0.96787 0.99218 0.92238 1.45901 1.07046 1.73912 1.09333 1.20608 0.90093 0.74949 0.83608 1.90740 1.71342 1.51212 1.33054 1.21441 0.90614 1.08071 0.97107 1.22438 0.77170 1.02398 0.98122 1.85951 1.21874 1.88295 1.27714 1.19144 0.92380 0.96728 0.84548 1.20311 0.91107 1.05776 0.98807 1.20242 0.96322 0.99122 0.92754 1.25294 0.90654 0.90268 1.12484 1.86467 1.72487 1.15893 1.61462 0.93532 0.76863 0.85675 0.74915 1.21173 0.94363 1.04127 0.97851 1.21248 0.94573 0.95694 0.97788 1.21547 1.00846 1.07909 0.92726 1.21748 0.94394 1.01605 0.97425 1.21247 0.95015 0.94596 1.02506 0.92310 0.92859 0.88690 0.91027 0.88846 0.89314 0.88215 0.93404 0.92526 0.88861 0.74297 0.85685 0.85467 0.91733 0.91770 0.85463 0.87535 0.75440 1.22640 1.21097 0.83480 0.82977 0.84626 0.90499 0.88394 0.93353 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.02 10.44 127.77 1.33 1.31 16 2 N -0.62 0.10 3.27 -871.90 -2.85 -2.75 16 3 C 0.07 -0.56 8.80 127.77 1.12 0.57 16 4 C 0.50 2.44 7.08 87.66 0.62 3.06 16 5 O -0.59 -8.62 15.56 -3.03 -0.05 -8.67 16 6 C -0.10 0.25 1.72 -11.54 -0.02 0.23 16 7 H 0.13 -1.03 7.40 -2.38 -0.02 -1.05 16 8 C -0.11 0.43 4.84 30.59 0.15 0.58 16 9 C -0.12 0.56 5.49 30.59 0.17 0.72 16 10 C 0.14 -0.42 2.45 44.99 0.11 -0.31 16 11 H 0.06 0.24 7.58 -2.39 -0.02 0.22 16 12 N -0.71 3.91 5.08 -442.54 -2.25 1.67 16 13 C 0.52 -0.05 7.79 87.66 0.68 0.64 16 14 O -0.58 -5.39 15.64 -3.02 -0.05 -5.43 16 15 C -0.13 0.60 6.07 29.85 0.18 0.78 16 16 C 0.07 0.09 4.03 71.98 0.29 0.38 16 17 O -0.32 -1.45 10.14 -92.39 -0.94 -2.39 16 18 C 0.12 0.63 6.69 22.51 0.15 0.78 16 19 C -0.14 -0.71 9.55 22.37 0.21 -0.50 16 20 C -0.08 -0.17 5.39 -19.88 -0.11 -0.28 16 21 C -0.08 -0.05 2.82 71.24 0.20 0.15 16 22 O -0.56 -0.78 12.76 -148.98 -1.90 -2.68 16 23 Si 0.78 -1.51 29.79 68.60 2.04 0.53 16 24 C -0.16 0.03 8.67 22.28 0.19 0.22 16 25 C -0.08 -0.02 10.04 22.25 0.22 0.20 16 26 C -0.21 -0.67 9.04 22.37 0.20 -0.46 16 27 C -0.11 0.67 5.40 30.61 0.17 0.84 16 28 C -0.09 0.03 4.49 30.61 0.14 0.17 16 29 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.05 0.26 7.42 -2.38 -0.02 0.24 16 31 H 0.09 -0.52 8.07 -2.39 -0.02 -0.54 16 32 H 0.07 -0.70 6.95 -2.39 -0.02 -0.72 16 33 H 0.09 -1.10 6.01 -2.39 -0.01 -1.11 16 34 H 0.09 -0.97 8.07 -2.39 -0.02 -0.99 16 35 H 0.10 -0.74 4.53 -2.39 -0.01 -0.75 16 36 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.42 -5.08 8.60 -92.71 -0.80 -5.88 16 40 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.13 -1.06 8.14 -2.38 -0.02 -1.08 16 42 H 0.06 0.16 7.62 -2.39 -0.02 0.14 16 43 H 0.06 0.17 7.62 -2.38 -0.02 0.15 16 44 H 0.13 0.70 8.06 -2.91 -0.02 0.67 16 45 H 0.11 0.20 7.96 -2.39 -0.02 0.18 16 46 H 0.40 -2.64 8.70 -74.05 -0.64 -3.29 16 47 H -0.30 -1.60 7.11 99.48 0.71 -0.89 16 48 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 49 H 0.15 -0.70 4.87 -2.91 -0.01 -0.71 16 50 H 0.15 -0.70 8.06 -2.91 -0.02 -0.72 16 51 H 0.14 0.24 6.30 -2.91 -0.02 0.22 16 52 H 0.08 -0.43 8.14 -2.39 -0.02 -0.44 16 53 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 54 H 0.05 0.24 8.10 -2.39 -0.02 0.22 16 55 H 0.07 0.11 8.10 -2.38 -0.02 0.09 16 Total: 0.00 -29.22 432.41 -0.46 -29.68 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: -0.49 Total: -19.03 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.02 Total: 9.07 kcal Atomic # 7 Polarization: 4.02 SS G_CDS: -5.10 Total: -1.08 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -2.93 Total: -19.17 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.04 Total: 0.53 kcal Total: -29.22 -0.46 -29.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_4549614.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.469 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds