Wall clock time and date at job start Sun Mar 7 2021 09:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36771 * 125.80434 * 2 1 4 4 C 1.47260 * 126.93766 * 0.02562 * 3 2 1 5 5 O 1.21624 * 120.00634 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00288 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47362 * 325.00122 * 7 6 4 9 9 C 1.53007 * 109.47190 * 84.99871 * 7 6 4 10 10 C 1.52995 * 109.47167 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47137 * 299.99963 * 10 9 7 12 12 H 1.08997 * 109.47280 * 299.99905 * 11 10 9 13 13 C 1.50702 * 109.46842 * 180.02562 * 11 10 9 14 14 O 1.21285 * 119.99461 * 249.83739 * 13 11 10 15 15 N 1.34771 * 120.00691 * 69.83860 * 13 11 10 16 16 C 1.46496 * 120.00822 * 184.82529 * 15 13 11 17 17 C 1.46508 * 119.99514 * 4.82248 * 15 13 11 18 18 C 1.53000 * 109.47282 * 60.00103 * 11 10 9 19 19 C 1.52995 * 109.46951 * 300.00011 * 18 11 10 20 20 C 1.46688 * 106.11687 * 180.28162 * 3 2 1 21 21 C 1.34492 * 106.33110 * 359.56486 * 20 3 2 22 22 C 1.50699 * 125.57173 * 180.14678 * 21 20 3 23 23 O 1.42903 * 109.46993 * 300.31416 * 22 21 20 24 24 Si 1.86295 * 109.47156 * 180.31221 * 22 21 20 25 25 N 1.34667 * 125.79908 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47217 * 90.00415 * 1 2 3 27 27 H 1.09005 * 109.47421 * 210.00525 * 1 2 3 28 28 H 1.09002 * 109.47035 * 330.00200 * 1 2 3 29 29 H 0.97008 * 119.99867 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46958 * 300.00334 * 9 7 6 31 31 H 1.09004 * 109.46715 * 59.99733 * 9 7 6 32 32 H 1.08997 * 109.46958 * 60.00065 * 10 9 7 33 33 H 1.09000 * 109.46699 * 179.97438 * 10 9 7 34 34 H 1.09006 * 109.46871 * 59.99733 * 16 15 13 35 35 H 1.08996 * 109.47776 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.47055 * 300.00474 * 16 15 13 37 37 H 1.09002 * 109.46602 * 83.31768 * 17 15 13 38 38 H 1.08999 * 109.46802 * 203.31193 * 17 15 13 39 39 H 1.09000 * 109.47428 * 323.31583 * 17 15 13 40 40 H 1.08995 * 109.47001 * 179.97438 * 18 11 10 41 41 H 1.09007 * 109.47077 * 59.99858 * 18 11 10 42 42 H 1.09001 * 109.47222 * 179.97438 * 19 18 11 43 43 H 1.08995 * 109.47447 * 299.99650 * 19 18 11 44 44 H 1.08001 * 126.83516 * 179.73546 * 20 3 2 45 45 H 1.09001 * 109.47326 * 60.31022 * 22 21 20 46 46 H 0.96697 * 113.99892 * 179.97438 * 23 22 21 47 47 H 1.48501 * 110.00054 * 298.68124 * 24 22 21 48 48 H 1.48505 * 110.00133 * 60.00151 * 24 22 21 49 49 H 0.97000 * 124.85094 * 359.96339 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5155 0.0005 5 8 0.6840 2.7839 0.0015 6 7 2.7850 3.5053 -0.0001 7 6 2.3504 4.9044 -0.0001 8 1 1.4385 5.0016 -0.5891 9 6 2.0797 5.3544 1.4370 10 6 1.6253 6.8153 1.4369 11 6 2.7219 7.6905 0.8264 12 1 3.6339 7.5937 1.4154 13 6 2.2745 9.1295 0.8269 14 8 2.0090 9.6823 -0.2195 15 7 2.1693 9.8023 1.9900 16 6 1.6342 11.1659 2.0018 17 6 2.5902 9.1697 3.2427 18 6 2.9926 7.2405 -0.6106 19 6 3.4470 5.7796 -0.6105 20 6 3.6882 0.6151 -0.0069 21 6 3.6095 -0.7275 -0.0007 22 6 4.7819 -1.6744 -0.0012 23 8 5.5751 -1.4498 -1.1684 24 14 4.1614 -3.4310 -0.0005 25 7 2.2947 -1.0923 -0.0005 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 3.7311 3.2913 -0.0005 30 1 1.2982 4.7312 1.8718 31 1 2.9917 5.2572 2.0260 32 1 0.7133 6.9121 0.8480 33 1 1.4321 7.1357 2.4607 34 1 0.6179 11.1609 1.6078 35 1 1.6253 11.5440 3.0241 36 1 2.2608 11.8075 1.3823 37 1 3.6673 9.2849 3.3638 38 1 2.0777 9.6443 4.0794 39 1 2.3388 8.1094 3.2167 40 1 3.7734 7.8642 -1.0456 41 1 2.0804 7.3373 -1.1996 42 1 3.6394 5.4588 -1.6343 43 1 4.3590 5.6828 -0.0216 44 1 4.5890 1.2108 -0.0128 45 1 5.3879 -1.5028 0.8884 46 1 6.3491 -2.0255 -1.2347 47 1 3.3614 -3.6866 1.2243 48 1 3.3337 -3.6778 -1.2085 49 1 1.9733 -2.0075 -0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310356_9865296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:39 Heat of formation + Delta-G solvation = -58.116931 kcal Electronic energy + Delta-G solvation = -29512.015651 eV Core-core repulsion = 25441.156211 eV Total energy + Delta-G solvation = -4070.859441 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48047 -41.41415 -40.20628 -38.39779 -37.78620 -36.53416 -35.06830 -32.89528 -32.44102 -31.85696 -30.77797 -29.06058 -28.77271 -27.18627 -25.61479 -24.16636 -23.79369 -22.63917 -21.52247 -21.21599 -20.43050 -19.97475 -18.64838 -18.10564 -17.89195 -17.52545 -16.96347 -16.86924 -16.65356 -16.20494 -15.89930 -15.55713 -15.24111 -15.10131 -14.94072 -14.85828 -14.55606 -14.48892 -14.25140 -14.14991 -13.80493 -13.70483 -13.68020 -13.58710 -13.47506 -13.23944 -13.17124 -12.93090 -12.75553 -12.51728 -12.45746 -12.24717 -12.19781 -12.07248 -11.49490 -11.26316 -10.74228 -10.56808 -10.46227 -9.98349 -9.77216 -9.64116 -9.12449 -5.32620 0.78327 0.97181 1.20133 1.40618 1.64135 1.70963 1.89503 2.04878 2.44785 2.70058 3.30170 3.47060 3.62651 3.65371 3.66660 3.82731 3.99576 4.02468 4.12634 4.16249 4.17475 4.19670 4.27921 4.29860 4.32811 4.40732 4.43961 4.48090 4.51008 4.55755 4.65321 4.68840 4.73677 4.76390 4.82695 4.89936 4.97839 5.04916 5.07168 5.15472 5.18019 5.25243 5.31007 5.41013 5.49399 5.67645 5.73622 5.86929 6.25357 6.36732 6.47374 6.76061 7.24893 7.52733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.122 3.878 3 C -0.240 4.240 4 C 0.596 3.404 5 O -0.547 6.547 6 N -0.724 5.724 7 C 0.146 3.854 8 H 0.090 0.910 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.106 4.106 12 H 0.096 0.904 13 C 0.516 3.484 14 O -0.535 6.535 15 N -0.624 5.624 16 C 0.088 3.912 17 C 0.066 3.934 18 C -0.096 4.096 19 C -0.126 4.126 20 C -0.122 4.122 21 C 0.012 3.988 22 C -0.038 4.038 23 O -0.542 6.542 24 Si 0.682 3.318 25 N -0.551 5.551 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.400 0.600 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.149 0.851 45 H 0.086 0.914 46 H 0.385 0.615 47 H -0.252 1.252 48 H -0.250 1.250 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -4.999 5.327 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.004 3.996 3 C -0.249 4.249 4 C 0.385 3.615 5 O -0.426 6.426 6 N -0.374 5.374 7 C 0.041 3.959 8 H 0.109 0.891 9 C -0.164 4.164 10 C -0.150 4.150 11 C -0.128 4.128 12 H 0.114 0.886 13 C 0.304 3.696 14 O -0.411 6.411 15 N -0.358 5.358 16 C -0.055 4.055 17 C -0.077 4.077 18 C -0.134 4.134 19 C -0.164 4.164 20 C -0.146 4.146 21 C -0.095 4.095 22 C -0.150 4.150 23 O -0.348 6.348 24 Si 0.582 3.418 25 N -0.151 5.151 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.166 0.834 45 H 0.103 0.897 46 H 0.233 0.767 47 H -0.177 1.177 48 H -0.174 1.174 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.533 -4.704 4.660 7.505 hybrid contribution 0.507 -0.052 0.307 0.595 sum 4.040 -4.756 4.967 7.976 Atomic orbital electron populations 1.20657 0.86479 1.04537 1.03934 1.20424 0.93812 0.85148 1.00182 1.20120 0.92950 0.92100 1.19764 1.17265 0.85291 0.83908 0.75060 1.90749 1.16568 1.84309 1.51018 1.45816 1.09769 1.05596 1.76228 1.20985 0.98712 0.79619 0.96552 0.89149 1.21912 1.02138 0.95398 0.97000 1.21623 0.97860 0.94103 1.01382 1.21394 1.00458 0.91165 0.99751 0.88597 1.20728 0.77270 0.88593 0.82971 1.90717 1.49330 1.69929 1.31094 1.47785 1.64491 1.15954 1.07597 1.21654 0.99309 0.82171 1.02354 1.22128 1.00370 0.99554 0.85622 1.21292 1.03094 0.94625 0.94404 1.21826 0.98022 0.94690 1.01862 1.21762 0.95695 0.92312 1.04848 1.19215 0.83202 0.94465 1.12663 1.23899 0.92764 1.06976 0.91402 1.86508 1.42084 1.64434 1.41823 0.94588 0.87303 0.79190 0.80729 1.41752 1.05682 1.08323 1.59350 0.89967 0.91659 0.87585 0.76604 0.90747 0.91450 0.90840 0.90518 0.92094 0.90619 0.92007 0.92365 0.90600 0.90093 0.90726 0.90486 0.90612 0.91178 0.83351 0.89670 0.76661 1.17656 1.17357 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.13 9.88 36.00 0.36 0.22 16 2 C 0.12 0.34 7.17 -81.88 -0.59 -0.25 16 3 C -0.24 -0.80 6.29 -103.35 -0.65 -1.45 16 4 C 0.60 2.35 7.77 -12.59 -0.10 2.25 16 5 O -0.55 -3.67 14.47 5.26 0.08 -3.60 16 6 N -0.72 -0.73 5.07 -54.93 -0.28 -1.01 16 7 C 0.15 0.10 2.45 -67.93 -0.17 -0.07 16 8 H 0.09 0.27 7.58 -51.93 -0.39 -0.12 16 9 C -0.13 0.02 5.49 -26.73 -0.15 -0.12 16 10 C -0.11 0.05 4.90 -26.73 -0.13 -0.08 16 11 C -0.11 0.00 1.71 -91.77 -0.16 -0.16 16 12 H 0.10 -0.17 7.67 -51.93 -0.40 -0.57 16 13 C 0.52 1.49 6.93 -10.99 -0.08 1.41 16 14 O -0.53 -3.74 15.99 5.55 0.09 -3.65 16 15 N -0.62 -0.48 3.27 -189.51 -0.62 -1.10 16 16 C 0.09 0.02 10.17 59.84 0.61 0.63 16 17 C 0.07 -0.17 9.84 59.85 0.59 0.42 16 18 C -0.10 -0.06 4.55 -26.73 -0.12 -0.19 16 19 C -0.13 0.10 5.39 -26.73 -0.14 -0.04 16 20 C -0.12 -0.23 10.43 -37.50 -0.39 -0.62 16 21 C 0.01 0.02 6.14 -81.86 -0.50 -0.48 16 22 C -0.04 0.06 2.97 36.00 0.11 0.16 16 23 O -0.54 0.60 12.84 -35.23 -0.45 0.15 16 24 Si 0.68 -1.83 30.94 -169.99 -5.26 -7.09 16 25 N -0.55 -0.85 5.41 -5.42 -0.03 -0.88 16 26 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 28 H 0.11 0.30 6.46 -51.93 -0.34 -0.03 16 29 H 0.40 -0.43 7.73 -40.82 -0.32 -0.75 16 30 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.08 -0.13 5.45 -51.93 -0.28 -0.41 16 34 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.08 -0.17 7.71 -51.93 -0.40 -0.57 16 36 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.06 -0.19 8.14 -51.93 -0.42 -0.61 16 38 H 0.08 -0.28 7.78 -51.93 -0.40 -0.69 16 39 H 0.08 -0.27 4.37 -51.93 -0.23 -0.50 16 40 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 41 H 0.08 0.18 7.99 -51.93 -0.42 -0.23 16 42 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 43 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 44 H 0.15 -0.03 7.70 -52.49 -0.40 -0.43 16 45 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 46 H 0.39 -2.40 8.74 45.56 0.40 -2.00 16 47 H -0.25 0.13 7.11 56.52 0.40 0.53 16 48 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 49 H 0.41 -0.07 6.70 -40.82 -0.27 -0.34 16 LS Contribution 387.74 15.07 5.84 5.84 Total: 0.00 -11.03 387.74 -9.86 -20.88 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -7.71 Total: -11.18 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.51 Total: 1.64 kcal Atomic # 7 Polarization: -2.07 SS G_CDS: -0.93 Total: -3.00 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.29 Total: -7.10 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.26 Total: -7.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -11.03 -9.86 -20.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_9865296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.233 kcal (2) G-P(sol) polarization free energy of solvation -11.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds