Wall clock time and date at job start Sun Mar 7 2021 09:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36771 * 125.80434 * 2 1 4 4 C 1.47260 * 126.93766 * 0.02562 * 3 2 1 5 5 O 1.21624 * 120.00634 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99844 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00288 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47362 * 325.00122 * 7 6 4 9 9 C 1.53007 * 109.47190 * 84.99871 * 7 6 4 10 10 C 1.52995 * 109.47167 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47137 * 299.99963 * 10 9 7 12 12 H 1.08997 * 109.47280 * 299.99905 * 11 10 9 13 13 C 1.50702 * 109.46842 * 180.02562 * 11 10 9 14 14 O 1.21285 * 119.99461 * 249.83739 * 13 11 10 15 15 N 1.34771 * 120.00691 * 69.83860 * 13 11 10 16 16 C 1.46496 * 120.00822 * 184.82529 * 15 13 11 17 17 C 1.46508 * 119.99514 * 4.82248 * 15 13 11 18 18 C 1.53000 * 109.47282 * 60.00103 * 11 10 9 19 19 C 1.52995 * 109.46951 * 300.00011 * 18 11 10 20 20 C 1.46688 * 106.11687 * 180.28162 * 3 2 1 21 21 C 1.34492 * 106.33110 * 359.56486 * 20 3 2 22 22 C 1.50699 * 125.57173 * 180.14678 * 21 20 3 23 23 O 1.42903 * 109.46993 * 300.31416 * 22 21 20 24 24 Si 1.86295 * 109.47156 * 180.31221 * 22 21 20 25 25 N 1.34667 * 125.79908 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47217 * 90.00415 * 1 2 3 27 27 H 1.09005 * 109.47421 * 210.00525 * 1 2 3 28 28 H 1.09002 * 109.47035 * 330.00200 * 1 2 3 29 29 H 0.97008 * 119.99867 * 359.97438 * 6 4 3 30 30 H 1.09004 * 109.46958 * 300.00334 * 9 7 6 31 31 H 1.09004 * 109.46715 * 59.99733 * 9 7 6 32 32 H 1.08997 * 109.46958 * 60.00065 * 10 9 7 33 33 H 1.09000 * 109.46699 * 179.97438 * 10 9 7 34 34 H 1.09006 * 109.46871 * 59.99733 * 16 15 13 35 35 H 1.08996 * 109.47776 * 179.97438 * 16 15 13 36 36 H 1.08999 * 109.47055 * 300.00474 * 16 15 13 37 37 H 1.09002 * 109.46602 * 83.31768 * 17 15 13 38 38 H 1.08999 * 109.46802 * 203.31193 * 17 15 13 39 39 H 1.09000 * 109.47428 * 323.31583 * 17 15 13 40 40 H 1.08995 * 109.47001 * 179.97438 * 18 11 10 41 41 H 1.09007 * 109.47077 * 59.99858 * 18 11 10 42 42 H 1.09001 * 109.47222 * 179.97438 * 19 18 11 43 43 H 1.08995 * 109.47447 * 299.99650 * 19 18 11 44 44 H 1.08001 * 126.83516 * 179.73546 * 20 3 2 45 45 H 1.09001 * 109.47326 * 60.31022 * 22 21 20 46 46 H 0.96697 * 113.99892 * 179.97438 * 23 22 21 47 47 H 1.48501 * 110.00054 * 298.68124 * 24 22 21 48 48 H 1.48505 * 110.00133 * 60.00151 * 24 22 21 49 49 H 0.97000 * 124.85094 * 359.96339 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5155 0.0005 5 8 0.6840 2.7839 0.0015 6 7 2.7850 3.5053 -0.0001 7 6 2.3504 4.9044 -0.0001 8 1 1.4385 5.0016 -0.5891 9 6 2.0797 5.3544 1.4370 10 6 1.6253 6.8153 1.4369 11 6 2.7219 7.6905 0.8264 12 1 3.6339 7.5937 1.4154 13 6 2.2745 9.1295 0.8269 14 8 2.0090 9.6823 -0.2195 15 7 2.1693 9.8023 1.9900 16 6 1.6342 11.1659 2.0018 17 6 2.5902 9.1697 3.2427 18 6 2.9926 7.2405 -0.6106 19 6 3.4470 5.7796 -0.6105 20 6 3.6882 0.6151 -0.0069 21 6 3.6095 -0.7275 -0.0007 22 6 4.7819 -1.6744 -0.0012 23 8 5.5751 -1.4498 -1.1684 24 14 4.1614 -3.4310 -0.0005 25 7 2.2947 -1.0923 -0.0005 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 3.7311 3.2913 -0.0005 30 1 1.2982 4.7312 1.8718 31 1 2.9917 5.2572 2.0260 32 1 0.7133 6.9121 0.8480 33 1 1.4321 7.1357 2.4607 34 1 0.6179 11.1609 1.6078 35 1 1.6253 11.5440 3.0241 36 1 2.2608 11.8075 1.3823 37 1 3.6673 9.2849 3.3638 38 1 2.0777 9.6443 4.0794 39 1 2.3388 8.1094 3.2167 40 1 3.7734 7.8642 -1.0456 41 1 2.0804 7.3373 -1.1996 42 1 3.6394 5.4588 -1.6343 43 1 4.3590 5.6828 -0.0216 44 1 4.5890 1.2108 -0.0128 45 1 5.3879 -1.5028 0.8884 46 1 6.3491 -2.0255 -1.2347 47 1 3.3614 -3.6866 1.2243 48 1 3.3337 -3.6778 -1.2085 49 1 1.9733 -2.0075 -0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310356_9865296.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:03:38 Heat of formation + Delta-G solvation = -61.204741 kcal Electronic energy + Delta-G solvation = -29512.149549 eV Core-core repulsion = 25441.156211 eV Total energy + Delta-G solvation = -4070.993338 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58760 -41.54060 -40.41865 -38.55393 -37.64655 -36.67234 -35.25710 -32.97866 -32.57209 -31.89266 -30.87011 -29.06147 -28.71701 -27.22066 -25.67611 -24.23906 -23.82347 -22.76098 -21.59856 -21.31559 -20.57271 -20.07705 -18.53131 -18.14350 -17.98467 -17.60926 -17.08801 -17.01295 -16.75206 -16.32129 -15.91571 -15.55337 -15.32956 -15.12167 -15.00951 -14.93454 -14.63692 -14.54614 -14.29445 -14.21620 -13.88802 -13.80134 -13.66001 -13.58705 -13.55654 -13.34381 -13.15905 -12.93894 -12.68313 -12.59789 -12.49853 -12.31304 -12.12360 -12.09424 -11.53148 -11.33636 -11.00451 -10.73375 -10.37936 -10.18146 -9.88332 -9.71438 -9.23593 -5.11801 0.58738 1.08613 1.22189 1.52660 1.55584 1.80529 1.82846 2.03012 2.33283 2.46934 3.40299 3.45097 3.59715 3.62621 3.68162 3.85405 3.96947 4.02647 4.08438 4.12799 4.17801 4.24168 4.31498 4.37899 4.41657 4.42354 4.45457 4.46549 4.47049 4.56629 4.60817 4.67893 4.71132 4.79477 4.84828 4.88396 4.89475 4.98192 5.05960 5.12287 5.15348 5.17332 5.27500 5.35656 5.48847 5.56253 5.61845 5.75504 6.19872 6.30478 6.63505 6.91023 7.09732 7.32098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.107 3.893 3 C -0.259 4.259 4 C 0.589 3.411 5 O -0.585 6.585 6 N -0.709 5.709 7 C 0.145 3.855 8 H 0.058 0.942 9 C -0.117 4.117 10 C -0.104 4.104 11 C -0.097 4.097 12 H 0.127 0.873 13 C 0.506 3.494 14 O -0.588 6.588 15 N -0.623 5.623 16 C 0.084 3.916 17 C 0.059 3.941 18 C -0.094 4.094 19 C -0.114 4.114 20 C -0.129 4.129 21 C 0.000 4.000 22 C -0.045 4.045 23 O -0.562 6.562 24 Si 0.772 3.228 25 N -0.551 5.551 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.413 0.587 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.168 0.832 45 H 0.111 0.889 46 H 0.407 0.593 47 H -0.281 1.281 48 H -0.297 1.297 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 -5.917 7.164 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.012 4.012 3 C -0.269 4.269 4 C 0.379 3.621 5 O -0.467 6.467 6 N -0.360 5.360 7 C 0.041 3.959 8 H 0.076 0.924 9 C -0.155 4.155 10 C -0.142 4.142 11 C -0.118 4.118 12 H 0.144 0.856 13 C 0.296 3.704 14 O -0.469 6.469 15 N -0.356 5.356 16 C -0.059 4.059 17 C -0.082 4.082 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.107 4.107 22 C -0.156 4.156 23 O -0.372 6.372 24 Si 0.677 3.323 25 N -0.151 5.151 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.249 0.751 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.186 0.814 45 H 0.129 0.871 46 H 0.259 0.741 47 H -0.207 1.207 48 H -0.224 1.224 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.071 -5.626 6.543 10.551 hybrid contribution -0.285 0.242 -0.271 0.462 sum 5.785 -5.384 6.272 10.089 Atomic orbital electron populations 1.20605 0.86092 1.04644 1.03910 1.20641 0.94412 0.85613 1.00486 1.20263 0.94139 0.91847 1.20663 1.17499 0.85103 0.84725 0.74737 1.90727 1.18145 1.84886 1.52946 1.45697 1.10081 1.05190 1.75010 1.20969 0.98123 0.79773 0.97040 0.92362 1.21822 1.02579 0.94827 0.96288 1.21559 0.96728 0.94004 1.01944 1.21380 1.01556 0.89263 0.99620 0.85559 1.21276 0.76675 0.89623 0.82843 1.90688 1.51898 1.71194 1.33101 1.47967 1.63331 1.16018 1.08239 1.21723 0.98205 0.82097 1.03881 1.22387 1.01450 1.00051 0.84340 1.21238 1.01714 0.95630 0.94719 1.21734 0.98234 0.92966 1.02209 1.22022 0.95543 0.92771 1.04917 1.19840 0.83875 0.95277 1.11749 1.24102 0.92330 1.06784 0.92397 1.86452 1.43270 1.65556 1.41901 0.93579 0.85302 0.76984 0.76468 1.41837 1.05892 1.08393 1.58966 0.90045 0.89599 0.89353 0.75073 0.92689 0.88906 0.93313 0.88659 0.93444 0.87556 0.93332 0.90962 0.88934 0.89107 0.91091 0.93265 0.90770 0.88383 0.81447 0.87148 0.74091 1.20727 1.22410 0.74599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 9.88 71.23 0.70 0.29 16 2 C 0.11 0.71 7.17 41.78 0.30 1.01 16 3 C -0.26 -1.96 6.29 -19.04 -0.12 -2.08 16 4 C 0.59 5.55 7.77 86.62 0.67 6.23 16 5 O -0.58 -9.45 14.47 -4.11 -0.06 -9.51 16 6 N -0.71 -1.72 5.07 -445.96 -2.26 -3.98 16 7 C 0.15 0.32 2.45 44.99 0.11 0.43 16 8 H 0.06 0.53 7.58 -2.39 -0.02 0.51 16 9 C -0.12 0.05 5.49 30.59 0.17 0.22 16 10 C -0.10 0.06 4.90 30.59 0.15 0.21 16 11 C -0.10 0.01 1.71 -11.54 -0.02 -0.01 16 12 H 0.13 -0.76 7.67 -2.39 -0.02 -0.78 16 13 C 0.51 3.38 6.93 87.66 0.61 3.99 16 14 O -0.59 -9.73 15.99 -3.05 -0.05 -9.77 16 15 N -0.62 -0.80 3.27 -871.88 -2.85 -3.65 16 16 C 0.08 0.07 10.17 127.77 1.30 1.37 16 17 C 0.06 -0.43 9.84 127.77 1.26 0.83 16 18 C -0.09 -0.22 4.55 30.59 0.14 -0.08 16 19 C -0.11 0.21 5.39 30.59 0.16 0.38 16 20 C -0.13 -0.43 10.43 23.62 0.25 -0.18 16 21 C 0.00 0.00 6.14 40.98 0.25 0.25 16 22 C -0.05 0.20 2.97 71.24 0.21 0.41 16 23 O -0.56 2.17 12.84 -148.98 -1.91 0.26 16 24 Si 0.77 -4.75 30.94 68.60 2.12 -2.63 16 25 N -0.55 -1.92 5.41 -171.06 -0.93 -2.84 16 26 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 28 H 0.09 0.73 6.46 -2.39 -0.02 0.71 16 29 H 0.41 -1.24 7.73 -92.70 -0.72 -1.96 16 30 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.09 -0.48 8.14 -2.38 -0.02 -0.50 16 32 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.10 -0.41 5.45 -2.39 -0.01 -0.43 16 34 H 0.05 0.17 8.14 -2.38 -0.02 0.15 16 35 H 0.11 -0.61 7.71 -2.39 -0.02 -0.63 16 36 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.07 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.09 -0.93 7.78 -2.39 -0.02 -0.95 16 39 H 0.09 -0.84 4.37 -2.39 -0.01 -0.85 16 40 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.05 0.39 7.99 -2.38 -0.02 0.37 16 42 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H 0.17 -0.29 7.70 -2.91 -0.02 -0.32 16 45 H 0.11 -1.02 7.96 -2.39 -0.02 -1.04 16 46 H 0.41 -5.93 8.74 -74.06 -0.65 -6.58 16 47 H -0.28 0.41 7.11 99.48 0.71 1.12 16 48 H -0.30 -0.50 7.11 99.48 0.71 0.20 16 49 H 0.41 0.06 6.70 -92.71 -0.62 -0.56 16 Total: 0.00 -30.06 387.74 -0.75 -30.82 By element: Atomic # 1 Polarization: -11.01 SS G_CDS: -0.96 Total: -11.96 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 6.14 Total: 13.27 kcal Atomic # 7 Polarization: -4.43 SS G_CDS: -6.04 Total: -10.48 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -2.02 Total: -19.02 kcal Atomic # 14 Polarization: -4.75 SS G_CDS: 2.12 Total: -2.63 kcal Total: -30.06 -0.75 -30.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310356_9865296.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.390 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds