Wall clock time and date at job start Sun Mar 7 2021 09:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47551 * 180.02562 * 9 8 6 11 11 C 1.53967 * 113.58017 * 274.25854 * 10 9 8 12 12 C 1.52950 * 86.69122 * 220.77153 * 11 10 9 13 13 C 1.52972 * 121.22408 * 258.71162 * 12 11 10 14 14 C 1.54137 * 85.91577 * 257.49888 * 13 12 11 15 15 N 1.46521 * 121.41412 * 151.00238 * 12 11 10 16 16 C 1.34776 * 134.67776 * 281.33662 * 15 12 11 17 17 O 1.21699 * 119.99841 * 359.97438 * 16 15 12 18 18 C 1.46677 * 120.00375 * 179.97438 * 16 15 12 19 19 C 1.37862 * 126.23456 * 180.02562 * 18 16 15 20 20 C 1.39840 * 107.08332 * 179.97438 * 19 18 16 21 21 C 1.35453 * 107.86468 * 0.02562 * 20 19 18 22 22 C 1.50699 * 125.56114 * 180.02562 * 21 20 19 23 23 O 1.42891 * 109.47248 * 244.97186 * 22 21 20 24 24 Si 1.86300 * 109.47453 * 4.97573 * 22 21 20 25 25 N 1.35533 * 108.87121 * 359.76330 * 21 20 19 26 26 C 1.52788 * 88.19030 * 24.76648 * 12 11 10 27 27 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 28 28 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 29 29 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 32 32 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 33 33 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 34 34 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 35 35 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 36 36 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.47024 * 300.00478 * 9 8 6 38 38 H 1.09004 * 109.46875 * 60.00324 * 9 8 6 39 39 H 1.09002 * 112.82057 * 45.33538 * 10 9 8 40 40 H 1.08999 * 113.66748 * 335.20749 * 11 10 9 41 41 H 1.09005 * 113.67244 * 106.27352 * 11 10 9 42 42 H 1.09002 * 113.80042 * 11.74340 * 13 12 11 43 43 H 1.08999 * 113.80298 * 143.13225 * 13 12 11 44 44 H 1.08998 * 113.73013 * 91.53014 * 14 13 12 45 45 H 1.08989 * 113.73152 * 222.70385 * 14 13 12 46 46 H 1.08000 * 126.45739 * 359.97438 * 19 18 16 47 47 H 1.07997 * 126.06372 * 179.97438 * 20 19 18 48 48 H 1.09000 * 109.46879 * 124.97481 * 22 21 20 49 49 H 0.96705 * 114.00130 * 60.00644 * 23 22 21 50 50 H 1.48504 * 110.00049 * 58.67925 * 24 22 21 51 51 H 1.48501 * 110.00302 * 179.97438 * 24 22 21 52 52 H 0.97000 * 125.67355 * 180.26163 * 25 21 20 53 53 H 1.09004 * 113.66750 * 220.77005 * 26 12 11 54 54 H 1.08994 * 113.75404 * 89.71125 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 6 2.2741 -4.6148 3.8794 11 6 3.7088 -5.1492 3.7162 12 6 3.2899 -6.2995 4.6330 13 6 3.6775 -6.3157 6.1128 14 6 4.7579 -7.3366 5.7052 15 7 3.9096 -7.6232 4.5293 16 6 3.7646 -8.6750 3.6992 17 8 2.9599 -8.6243 2.7876 18 6 4.5767 -9.8808 3.8942 19 6 4.5346 -11.0247 3.1260 20 6 5.4699 -11.9148 3.6630 21 6 6.0536 -11.3126 4.7266 22 6 7.1229 -11.9183 5.5989 23 8 6.6139 -12.0963 6.9222 24 14 7.6315 -13.5694 4.9018 25 7 5.5231 -10.0743 4.8749 26 6 1.8464 -6.0602 4.1933 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 2.6275 -2.2368 3.0828 37 1 0.5870 -4.1356 2.6289 38 1 2.0397 -4.6500 1.7381 39 1 2.1561 -3.9327 4.7214 40 1 3.9456 -5.4637 2.6998 41 1 4.4697 -4.4990 4.1480 42 1 4.0804 -5.3688 6.4723 43 1 2.9063 -6.7253 6.7651 44 1 5.7170 -6.8836 5.4541 45 1 4.8517 -8.1750 6.3952 46 1 3.8990 -11.2003 2.2706 47 1 5.6875 -12.9067 3.2954 48 1 7.9870 -11.2546 5.6282 49 1 5.8423 -12.6771 6.9720 50 1 8.1331 -13.4022 3.5141 51 1 8.6861 -14.1769 5.7527 52 1 5.7686 -9.4319 5.5590 53 1 1.1233 -6.1361 5.0054 54 1 1.5555 -6.6317 3.3119 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310358_6580494.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:09:58 Heat of formation + Delta-G solvation = -39.110541 kcal Electronic energy + Delta-G solvation = -34928.124614 eV Core-core repulsion = 30255.643400 eV Total energy + Delta-G solvation = -4672.481213 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.203 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.74013 -42.00887 -41.71436 -39.45766 -38.60265 -37.67691 -37.35298 -35.59612 -34.66824 -32.45159 -31.69383 -30.44561 -28.90373 -28.41251 -28.32950 -27.00330 -26.78958 -24.98243 -23.89919 -23.21371 -22.03099 -21.76623 -21.17488 -20.84540 -20.03797 -19.18870 -18.55923 -17.90932 -17.77611 -17.40960 -17.24137 -17.05015 -16.69178 -16.50435 -16.08523 -15.81735 -15.60321 -15.49127 -15.28768 -15.20497 -14.85008 -14.61720 -14.47891 -14.42571 -14.33349 -14.00337 -13.79047 -13.68048 -13.41456 -13.34774 -13.30810 -13.13588 -12.95995 -12.90369 -12.81863 -12.55092 -12.41273 -12.39090 -12.22803 -12.17244 -12.06667 -11.70968 -11.44135 -11.35969 -11.16377 -11.06566 -10.66165 -10.29223 -10.13293 -9.91683 -9.28969 -4.92281 0.25583 1.10257 1.21384 1.48894 1.59591 1.70227 1.71949 1.91678 2.16732 2.22157 3.05233 3.17593 3.36643 3.40041 3.44557 3.47912 3.57894 3.63652 3.68818 3.70829 3.75677 3.90766 4.02419 4.13348 4.20564 4.22989 4.27753 4.31314 4.40651 4.43534 4.53441 4.57052 4.58051 4.66753 4.69319 4.72423 4.73693 4.78622 4.82890 4.84398 4.87640 4.90590 4.92340 4.96423 5.03907 5.09954 5.17481 5.20015 5.22903 5.30053 5.40429 5.54940 5.59256 5.77083 6.28928 6.35343 6.50390 6.65927 6.94640 7.29555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.640 3.360 7 O -0.599 6.599 8 N -0.694 5.694 9 C 0.153 3.847 10 C -0.098 4.098 11 C -0.124 4.124 12 C 0.130 3.870 13 C -0.105 4.105 14 C 0.084 3.916 15 N -0.638 5.638 16 C 0.601 3.399 17 O -0.573 6.573 18 C -0.063 4.063 19 C -0.121 4.121 20 C -0.203 4.203 21 C 0.025 3.975 22 C -0.054 4.054 23 O -0.553 6.553 24 Si 0.804 3.196 25 N -0.514 5.514 26 C -0.131 4.131 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.420 0.580 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.138 0.862 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.143 0.857 47 H 0.172 0.828 48 H 0.117 0.883 49 H 0.399 0.601 50 H -0.288 1.288 51 H -0.292 1.292 52 H 0.424 0.576 53 H 0.093 0.907 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 2.017 8.351 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.394 3.606 7 O -0.490 6.490 8 N -0.355 5.355 9 C 0.030 3.970 10 C -0.117 4.117 11 C -0.162 4.162 12 C 0.046 3.954 13 C -0.142 4.142 14 C -0.037 4.037 15 N -0.371 5.371 16 C 0.393 3.607 17 O -0.453 6.453 18 C -0.176 4.176 19 C -0.148 4.148 20 C -0.226 4.226 21 C -0.094 4.094 22 C -0.164 4.164 23 O -0.361 6.361 24 Si 0.708 3.292 25 N -0.113 5.113 26 C -0.170 4.170 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.258 0.742 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.156 0.844 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.161 0.839 47 H 0.189 0.811 48 H 0.134 0.866 49 H 0.250 0.750 50 H -0.215 1.215 51 H -0.219 1.219 52 H 0.266 0.734 53 H 0.111 0.889 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.037 1.749 7.239 8.471 hybrid contribution 0.146 0.740 -0.211 0.783 sum 4.182 2.488 7.028 8.549 Atomic orbital electron populations 1.22475 0.94060 1.03571 1.03635 1.22362 0.94484 0.92679 0.81428 1.21885 1.02476 0.90623 1.04352 1.22480 1.01634 1.02119 0.97589 1.86305 1.71514 1.23073 1.47219 1.18404 0.78802 0.80877 0.82546 1.90920 1.42436 1.71132 1.44495 1.44631 1.55243 1.12409 1.23231 1.21266 0.99797 0.78315 0.97631 1.22624 0.95455 0.96376 0.97237 1.23197 0.97754 0.96001 0.99253 1.23071 0.94810 0.81199 0.96312 1.23237 0.97814 1.01237 0.91937 1.23666 0.96659 0.98908 0.84510 1.50089 1.41886 1.14262 1.30864 1.17016 0.81607 0.81794 0.80248 1.90825 1.38582 1.82603 1.33252 1.20358 1.01040 0.98069 0.98176 1.21482 1.00746 0.92219 1.00363 1.20952 1.01096 1.01949 0.98651 1.21445 1.01022 0.86502 1.00435 1.25052 0.95078 1.10705 0.85518 1.86467 1.52078 1.72793 1.24767 0.92950 0.83968 0.76945 0.75381 1.42218 1.29749 1.14401 1.24976 1.23036 0.96397 0.95287 1.02240 0.91676 0.89444 0.92077 0.91124 0.88328 0.90943 0.92171 0.89393 0.91930 0.74247 0.91651 0.93305 0.84437 0.91768 0.87322 0.85683 0.87551 0.87308 0.89121 0.83890 0.81107 0.86606 0.75031 1.21475 1.21904 0.73417 0.88876 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.82 8.37 71.98 0.60 -0.22 16 2 C 0.13 0.53 1.13 -10.79 -0.01 0.51 16 3 C -0.14 0.22 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.93 8.37 71.98 0.60 -0.32 16 5 O -0.37 -2.36 9.94 -55.54 -0.55 -2.91 16 6 C 0.64 5.50 8.06 129.79 1.05 6.54 16 7 O -0.60 -9.13 11.88 19.82 0.24 -8.89 16 8 N -0.69 -0.95 5.56 -590.86 -3.29 -4.23 16 9 C 0.15 0.26 5.49 86.38 0.47 0.74 16 10 C -0.10 0.48 3.75 -10.15 -0.04 0.44 16 11 C -0.12 0.49 7.54 30.90 0.23 0.72 16 12 C 0.13 -0.41 1.57 3.38 0.01 -0.40 16 13 C -0.10 1.10 8.05 30.98 0.25 1.35 16 14 C 0.08 -0.70 7.35 86.40 0.64 -0.06 16 15 N -0.64 -0.69 3.61 -792.84 -2.86 -3.55 16 16 C 0.60 5.62 8.01 86.45 0.69 6.31 16 17 O -0.57 -10.24 16.56 -4.35 -0.07 -10.31 16 18 C -0.06 -0.39 7.01 40.35 0.28 -0.10 16 19 C -0.12 -0.76 10.65 22.57 0.24 -0.52 16 20 C -0.20 -0.15 9.32 22.01 0.21 0.05 16 21 C 0.02 -0.02 6.47 41.34 0.27 0.24 16 22 C -0.05 0.23 3.08 71.24 0.22 0.45 16 23 O -0.55 2.42 12.88 -148.98 -1.92 0.50 16 24 Si 0.80 -3.92 30.56 68.60 2.10 -1.82 16 25 N -0.51 0.08 5.89 -171.94 -1.01 -0.93 16 26 C -0.13 0.05 7.34 30.85 0.23 0.28 16 27 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.06 0.64 5.88 -2.38 -0.01 0.63 16 30 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.06 0.68 5.88 -2.38 -0.01 0.66 16 34 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.42 -2.05 8.58 -92.71 -0.80 -2.84 16 37 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.05 0.35 7.88 -2.38 -0.02 0.33 16 39 H 0.14 -1.49 8.14 -2.39 -0.02 -1.51 16 40 H 0.06 0.18 7.92 -2.39 -0.02 0.16 16 41 H 0.11 -1.02 8.14 -2.38 -0.02 -1.04 16 42 H 0.13 -1.98 8.14 -2.39 -0.02 -2.00 16 43 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 44 H 0.11 -1.24 8.14 -2.39 -0.02 -1.26 16 45 H 0.09 -0.95 6.58 -2.39 -0.02 -0.97 16 46 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.17 -0.75 6.19 -2.91 -0.02 -0.76 16 48 H 0.12 -0.51 7.96 -2.39 -0.02 -0.53 16 49 H 0.40 -4.55 8.70 -74.05 -0.64 -5.19 16 50 H -0.29 -0.33 7.11 99.48 0.71 0.37 16 51 H -0.29 -0.52 7.11 99.48 0.71 0.19 16 52 H 0.42 -2.03 5.82 -92.71 -0.54 -2.57 16 53 H 0.09 -0.29 8.14 -2.38 -0.02 -0.31 16 54 H 0.07 0.54 7.20 -2.39 -0.02 0.52 16 Total: 0.00 -29.72 432.15 -1.80 -31.52 By element: Atomic # 1 Polarization: -15.24 SS G_CDS: -1.00 Total: -16.24 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.57 Total: 16.86 kcal Atomic # 7 Polarization: -1.55 SS G_CDS: -7.16 Total: -8.71 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -2.31 Total: -21.62 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.10 Total: -1.82 kcal Total: -29.72 -1.80 -31.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310358_6580494.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.586 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds