Wall clock time and date at job start Sun Mar 7 2021 09:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42908 * 109.46828 * 2 1 4 4 C 1.35903 * 116.99495 * 275.32101 * 3 2 1 5 5 C 1.38732 * 120.05956 * 5.08326 * 4 3 2 6 6 C 1.38143 * 119.94267 * 179.74117 * 5 4 3 7 7 C 1.38264 * 120.05460 * 0.51505 * 6 5 4 8 8 C 1.50705 * 119.94358 * 179.74063 * 7 6 5 9 9 O 1.42902 * 109.47096 * 245.02191 * 8 7 6 10 10 Si 1.86300 * 109.46858 * 5.02347 * 8 7 6 11 11 H 1.48498 * 109.47128 * 59.99964 * 10 8 7 12 12 H 1.48503 * 109.46532 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47213 * 299.99464 * 10 8 7 14 14 C 1.38266 * 120.11309 * 359.76299 * 7 6 5 15 15 C 1.38141 * 120.05657 * 359.97438 * 14 7 6 16 16 C 1.50697 * 109.47032 * 119.99777 * 2 1 3 17 17 O 1.21285 * 119.99958 * 245.00174 * 16 2 1 18 18 N 1.34777 * 120.00036 * 64.99983 * 16 2 1 19 19 C 1.46502 * 119.99761 * 180.02562 * 18 16 2 20 20 C 1.53000 * 109.46690 * 180.02562 * 19 18 16 21 21 C 1.53572 * 109.12381 * 66.45489 * 20 19 18 22 22 C 1.55919 * 109.50462 * 169.51746 * 21 20 19 23 23 Si 1.89652 * 99.33809 * 319.37711 * 22 21 20 24 24 C 1.86305 * 111.45788 * 138.35661 * 23 22 21 25 25 C 1.86296 * 111.46190 * 263.30323 * 23 22 21 26 26 C 1.55352 * 109.09211 * 188.23159 * 20 19 18 27 27 H 1.08992 * 109.47218 * 300.00420 * 1 2 3 28 28 H 1.09003 * 109.46916 * 60.00662 * 1 2 3 29 29 H 1.09000 * 109.46633 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47422 * 240.00057 * 2 1 3 31 31 H 1.08003 * 120.02621 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.96995 * 180.23301 * 6 5 4 33 33 H 1.09004 * 109.47002 * 125.02513 * 8 7 6 34 34 H 0.96692 * 113.99835 * 60.00260 * 9 8 7 35 35 H 1.08005 * 119.97511 * 179.97438 * 14 7 6 36 36 H 1.08002 * 120.02838 * 179.97438 * 15 14 7 37 37 H 0.96996 * 119.99624 * 0.02562 * 18 16 2 38 38 H 1.08994 * 109.47090 * 59.99958 * 19 18 16 39 39 H 1.09002 * 109.47169 * 300.00174 * 19 18 16 40 40 H 1.08992 * 109.11058 * 307.30232 * 20 19 18 41 41 H 1.09004 * 109.47194 * 49.49474 * 21 20 19 42 42 H 1.08998 * 109.47428 * 289.54056 * 21 20 19 43 43 H 1.09004 * 111.42507 * 201.84776 * 22 21 20 44 44 H 1.08995 * 111.47254 * 76.92981 * 22 21 20 45 45 H 1.08999 * 109.46977 * 185.06888 * 24 23 22 46 46 H 1.08996 * 109.46861 * 65.06766 * 24 23 22 47 47 H 1.09001 * 109.46952 * 305.07075 * 24 23 22 48 48 H 1.09006 * 109.47041 * 294.93430 * 25 23 22 49 49 H 1.09003 * 109.46970 * 54.93018 * 25 23 22 50 50 H 1.08997 * 109.47409 * 174.93709 * 25 23 22 51 51 H 1.09006 * 111.07457 * 92.91676 * 26 20 19 52 52 H 1.09000 * 111.09843 * 328.90141 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.1061 1.9664 -1.2057 5 6 1.6545 1.3303 -2.3530 6 6 1.7522 1.9639 -3.5766 7 6 2.3091 3.2267 -3.6600 8 6 2.4197 3.9132 -4.9970 9 8 3.7983 4.0832 -5.3326 10 14 1.5870 2.8737 -6.2996 11 1 0.1544 2.6971 -5.9508 12 1 1.6955 3.5506 -7.6169 13 1 2.2469 1.5452 -6.3693 14 6 2.7651 3.8605 -2.5189 15 6 2.6648 3.2333 -1.2921 16 6 2.0323 -0.7103 1.2305 17 8 2.6530 -0.0978 2.0734 18 7 1.7919 -2.0263 1.3942 19 6 2.2798 -2.7167 2.5907 20 6 1.8756 -4.1911 2.5291 21 6 2.6210 -4.8691 1.3702 22 6 2.4272 -6.4136 1.4592 23 14 2.5939 -6.6370 3.3352 24 6 1.3357 -7.8436 3.9923 25 6 4.3236 -7.1397 3.8107 26 6 2.2105 -4.8670 3.8872 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.2228 0.3423 -2.2888 32 1 1.3974 1.4706 -4.4694 33 1 1.9353 4.8884 -4.9459 34 1 4.2928 3.2546 -5.3956 35 1 3.2001 4.8467 -2.5867 36 1 3.0215 3.7287 -0.4012 37 1 1.2958 -2.5163 0.7199 38 1 1.8447 -2.2571 3.4781 39 1 3.3661 -2.6397 2.6371 40 1 0.8023 -4.2598 2.3522 41 1 3.6831 -4.6319 1.4330 42 1 2.2241 -4.5072 0.4217 43 1 3.2137 -6.9452 0.9235 44 1 1.4394 -6.7127 1.1088 45 1 1.4003 -7.8796 5.0798 46 1 1.5342 -8.8342 3.5835 47 1 0.3364 -7.5227 3.6981 48 1 4.5411 -8.1260 3.4007 49 1 5.0347 -6.4159 3.4125 50 1 4.4071 -7.1714 4.8970 51 1 1.3523 -4.8436 4.5589 52 1 3.0815 -4.4044 4.3515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:36:45 Heat of formation + Delta-G solvation = -126.207496 kcal Electronic energy + Delta-G solvation = -28451.312926 eV Core-core repulsion = 24539.221194 eV Total energy + Delta-G solvation = -3912.091731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82100 -40.68701 -39.15520 -37.86283 -37.13384 -34.93101 -33.25430 -31.92604 -31.56705 -30.33532 -29.10080 -28.37582 -27.27370 -26.57800 -25.14737 -24.17279 -23.79905 -22.42071 -21.46929 -20.70669 -19.58597 -18.68239 -18.10057 -17.24083 -17.00978 -16.91715 -16.40881 -16.26266 -15.94399 -15.72028 -15.58464 -15.32602 -14.99685 -14.63100 -14.57230 -14.48002 -14.15823 -13.85076 -13.81922 -13.75906 -13.64263 -13.48665 -13.39584 -13.32144 -13.28158 -13.14619 -12.90059 -12.51527 -12.25563 -12.21000 -12.17253 -12.05762 -12.02194 -11.84797 -11.53416 -11.40755 -11.03533 -10.75791 -10.38806 -10.35763 -10.30501 -10.14434 -10.06529 -9.24750 0.24332 0.27336 1.20998 1.38324 1.47603 1.48590 1.54552 1.79654 1.94441 2.02312 2.05510 2.49522 2.62846 2.66848 3.43731 3.58218 3.63160 3.69065 3.77436 3.82846 3.86437 3.92045 4.03249 4.11497 4.24892 4.34593 4.52213 4.53306 4.58446 4.61614 4.62766 4.66651 4.72063 4.78836 4.80541 4.82030 4.82939 4.86828 4.88593 4.93909 5.05547 5.14417 5.15903 5.22310 5.22560 5.26378 5.37503 5.47535 5.52555 5.57362 5.62457 5.64929 5.68492 6.23318 6.42720 6.73382 7.06741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 O -0.314 6.314 4 C 0.120 3.880 5 C -0.204 4.204 6 C -0.087 4.087 7 C -0.160 4.160 8 C -0.078 4.078 9 O -0.555 6.555 10 Si 0.983 3.017 11 H -0.254 1.254 12 H -0.279 1.279 13 H -0.247 1.247 14 C -0.054 4.054 15 C -0.165 4.165 16 C 0.512 3.488 17 O -0.574 6.574 18 N -0.707 5.707 19 C 0.125 3.875 20 C -0.086 4.086 21 C -0.119 4.119 22 C -0.403 4.403 23 Si 1.038 2.962 24 C -0.457 4.457 25 C -0.463 4.463 26 C -0.408 4.408 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.121 0.879 34 H 0.388 0.612 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.419 0.581 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 -7.289 -3.453 9.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 O -0.227 6.227 4 C 0.075 3.925 5 C -0.222 4.222 6 C -0.105 4.105 7 C -0.160 4.160 8 C -0.188 4.188 9 O -0.362 6.362 10 Si 0.807 3.193 11 H -0.178 1.178 12 H -0.205 1.205 13 H -0.171 1.171 14 C -0.072 4.072 15 C -0.184 4.184 16 C 0.298 3.702 17 O -0.452 6.452 18 N -0.361 5.361 19 C 0.002 3.998 20 C -0.105 4.105 21 C -0.156 4.156 22 C -0.489 4.489 23 Si 1.231 2.769 24 C -0.564 4.564 25 C -0.570 4.570 26 C -0.493 4.493 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.145 0.855 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.237 0.763 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.103 0.897 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.077 -6.708 -3.232 8.489 hybrid contribution 0.379 -0.153 0.416 0.583 sum -3.699 -6.860 -2.816 8.287 Atomic orbital electron populations 1.22373 0.90457 1.05754 1.04396 1.22439 0.97233 0.82135 0.97789 1.86201 1.81458 1.27026 1.28013 1.19259 0.95917 0.93059 0.84310 1.21441 1.06510 1.02613 0.91637 1.21080 0.97388 0.94141 0.97897 1.20378 1.03237 0.95880 0.96553 1.25025 0.88339 1.07690 0.97765 1.86488 1.20734 1.36829 1.92183 0.85219 0.79396 0.78181 0.76471 1.17794 1.20455 1.17075 1.20958 0.96045 0.99911 0.90296 1.20671 1.04143 0.94238 0.99352 1.20579 0.79222 0.82901 0.87488 1.90749 1.41752 1.67121 1.45582 1.45837 1.57496 1.07931 1.24843 1.21605 0.98960 0.92611 0.86665 1.21712 1.01859 0.91443 0.95453 1.22013 1.00392 0.95138 0.98064 1.26719 1.04751 0.97315 1.20116 0.79423 0.65251 0.65322 0.66855 1.26194 1.12299 1.11516 1.06380 1.26282 1.19633 1.05623 1.05420 1.26820 1.05291 1.19050 0.98174 0.92289 0.89390 0.87158 0.85510 0.82408 0.84098 0.86102 0.76289 0.84135 0.85429 0.74326 0.92592 0.92594 0.88869 0.92139 0.90751 0.90402 0.89641 0.91524 0.91238 0.90815 0.91219 0.91546 0.91474 0.89688 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.88 9.12 71.98 0.66 1.53 16 2 C 0.06 0.01 2.64 29.85 0.08 0.08 16 3 O -0.31 -2.53 9.34 -73.47 -0.69 -3.21 16 4 C 0.12 0.61 6.60 22.51 0.15 0.76 16 5 C -0.20 0.09 8.24 22.37 0.18 0.27 16 6 C -0.09 0.08 8.66 22.25 0.19 0.27 16 7 C -0.16 -0.11 5.35 -19.85 -0.11 -0.22 16 8 C -0.08 0.10 2.80 71.24 0.20 0.30 16 9 O -0.56 -0.31 12.83 -148.98 -1.91 -2.23 16 10 Si 0.98 -2.52 25.13 68.60 1.72 -0.79 16 11 H -0.25 0.51 7.11 99.48 0.71 1.22 16 12 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 13 H -0.25 0.87 7.04 99.48 0.70 1.57 16 14 C -0.05 -0.16 9.68 22.25 0.22 0.06 16 15 C -0.17 -0.94 9.99 22.37 0.22 -0.71 16 16 C 0.51 2.67 7.18 87.66 0.63 3.30 16 17 O -0.57 -9.69 16.51 15.94 0.26 -9.43 16 18 N -0.71 1.70 5.32 -463.06 -2.46 -0.76 16 19 C 0.12 -0.06 4.92 86.38 0.43 0.37 16 20 C -0.09 0.51 2.37 -9.79 -0.02 0.48 16 21 C -0.12 0.78 5.01 31.80 0.16 0.94 16 22 C -0.40 2.97 5.95 72.99 0.43 3.40 16 23 Si 1.04 -8.33 13.35 68.60 0.92 -7.42 16 24 C -0.46 2.61 8.65 113.37 0.98 3.59 16 25 C -0.46 1.88 8.65 113.37 0.98 2.86 16 26 C -0.41 2.27 5.28 72.79 0.38 2.65 16 27 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.09 -0.56 6.91 -2.39 -0.02 -0.58 16 29 H 0.11 -1.27 7.92 -2.39 -0.02 -1.29 16 30 H 0.13 -0.79 6.31 -2.39 -0.02 -0.80 16 31 H 0.16 -1.06 5.43 -2.91 -0.02 -1.07 16 32 H 0.14 -0.70 4.86 -2.91 -0.01 -0.71 16 33 H 0.12 -0.31 7.96 -2.38 -0.02 -0.33 16 34 H 0.39 -2.25 8.70 -74.06 -0.64 -2.90 16 35 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.42 -4.17 7.62 -92.71 -0.71 -4.88 16 38 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 39 H 0.06 0.16 8.07 -2.39 -0.02 0.14 16 40 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.06 -0.29 8.05 -2.39 -0.02 -0.31 16 42 H 0.07 -0.64 7.54 -2.39 -0.02 -0.66 16 43 H 0.08 -0.51 8.06 -2.39 -0.02 -0.53 16 44 H 0.08 -0.70 8.06 -2.39 -0.02 -0.72 16 45 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 46 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 47 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 48 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 49 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 50 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 51 H 0.08 -0.50 8.04 -2.38 -0.02 -0.52 16 52 H 0.07 -0.28 7.85 -2.39 -0.02 -0.30 16 Total: 0.00 -22.03 414.49 3.92 -18.11 By element: Atomic # 1 Polarization: -14.54 SS G_CDS: 0.31 Total: -14.23 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.76 Total: 19.95 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -2.46 Total: -0.76 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -2.33 Total: -14.87 kcal Atomic # 14 Polarization: -10.85 SS G_CDS: 2.64 Total: -8.21 kcal Total: -22.03 3.92 -18.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.096 kcal (2) G-P(sol) polarization free energy of solvation -22.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds