Wall clock time and date at job start Sun Mar 7 2021 09:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86301 * 111.24386 * 2 1 4 4 C 1.89340 * 111.45825 * 125.06898 * 2 1 3 5 5 C 1.55153 * 101.34833 * 120.85267 * 4 2 1 6 6 C 1.53575 * 111.28931 * 331.41174 * 5 4 2 7 7 C 1.53000 * 109.46804 * 169.06057 * 6 5 4 8 8 N 1.46500 * 109.47249 * 66.45530 * 7 6 5 9 9 C 1.34773 * 120.00165 * 179.97438 * 8 7 6 10 10 O 1.21718 * 119.99992 * 359.97438 * 9 8 7 11 11 C 1.46568 * 120.00118 * 180.02562 * 9 8 7 12 12 C 1.40856 * 126.58112 * 180.02562 * 11 9 8 13 13 C 1.40087 * 132.86532 * 0.28519 * 12 11 9 14 14 C 1.36447 * 119.25284 * 180.17928 * 13 12 11 15 15 C 1.50699 * 120.29469 * 179.80129 * 14 13 12 16 16 O 1.42903 * 109.47152 * 119.72602 * 15 14 13 17 17 Si 1.86305 * 109.47184 * 239.72074 * 15 14 13 18 18 H 1.48496 * 109.46885 * 60.00303 * 17 15 14 19 19 H 1.48499 * 109.46850 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47126 * 300.00092 * 17 15 14 21 21 C 1.40159 * 119.41119 * 359.53177 * 14 13 12 22 22 C 1.35188 * 120.31606 * 0.24780 * 21 14 13 23 23 N 1.36239 * 120.70559 * 359.97438 * 22 21 14 24 24 N 1.40021 * 132.01010 * 179.97438 * 23 22 21 25 25 C 1.30741 * 109.60283 * 180.02562 * 24 23 22 26 26 C 1.55914 * 109.50776 * 49.03707 * 6 5 4 27 27 H 1.08999 * 109.46969 * 294.93146 * 1 2 3 28 28 H 1.09000 * 109.47040 * 54.93507 * 1 2 3 29 29 H 1.08997 * 109.47189 * 174.93263 * 1 2 3 30 30 H 1.08996 * 109.46875 * 185.06892 * 3 2 1 31 31 H 1.08998 * 109.46796 * 305.06721 * 3 2 1 32 32 H 1.08999 * 109.46719 * 65.06720 * 3 2 1 33 33 H 1.08999 * 111.04385 * 2.83461 * 4 2 1 34 34 H 1.09001 * 111.07823 * 238.88616 * 4 2 1 35 35 H 1.08998 * 109.12090 * 210.92891 * 5 4 2 36 36 H 1.09000 * 109.12227 * 91.89654 * 5 4 2 37 37 H 1.09000 * 109.47123 * 289.05988 * 6 5 4 38 38 H 1.08996 * 109.47404 * 306.45606 * 7 6 5 39 39 H 1.09000 * 109.46909 * 186.45397 * 7 6 5 40 40 H 0.97002 * 119.99602 * 359.97438 * 8 7 6 41 41 H 1.08003 * 120.37468 * 359.97438 * 13 12 11 42 42 H 1.08997 * 109.47198 * 359.72280 * 15 14 13 43 43 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 44 44 H 1.08000 * 119.84518 * 180.27600 * 21 14 13 45 45 H 1.07997 * 119.64886 * 180.02562 * 22 21 14 46 46 H 1.08006 * 125.62645 * 179.97438 * 25 24 23 47 47 H 1.09008 * 111.42508 * 76.90797 * 26 6 5 48 48 H 1.09000 * 111.42778 * 201.84432 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5381 1.7364 0.0000 4 6 2.5557 -1.0125 1.4423 5 6 3.3934 -2.0806 0.6909 6 6 2.8147 -2.3637 -0.7032 7 6 3.8087 -3.2049 -1.5067 8 7 3.9329 -4.5304 -0.8953 9 6 4.7589 -5.4475 -1.4367 10 8 5.4013 -5.1746 -2.4339 11 6 4.8828 -6.7738 -0.8253 12 6 5.6994 -7.8310 -1.2719 13 6 6.5894 -7.9595 -2.3461 14 6 7.2498 -9.1396 -2.5273 15 6 8.2091 -9.3050 -3.6777 16 8 9.5133 -9.5975 -3.1721 17 14 7.6373 -10.7042 -4.7669 18 1 6.2821 -10.4003 -5.2924 19 1 8.5830 -10.8675 -5.9001 20 1 7.5915 -11.9602 -3.9761 21 6 7.0324 -10.1947 -1.6307 22 6 6.1723 -10.0467 -0.5983 23 7 5.5048 -8.8738 -0.4117 24 7 4.5781 -8.4666 0.5558 25 6 4.2094 -7.2348 0.3190 26 6 2.5568 -1.0160 -1.4434 27 1 -0.3633 0.4332 0.9319 28 1 -0.3633 0.5904 -0.8411 29 1 -0.3633 -1.0236 -0.0908 30 1 3.6238 1.7041 -0.0908 31 1 2.1194 2.2889 -0.8411 32 1 2.2659 2.2320 0.9319 33 1 1.7532 -1.4765 2.0157 34 1 3.1882 -0.3989 2.0838 35 1 3.3972 -3.0038 1.2703 36 1 4.4176 -1.7225 0.5865 37 1 1.8757 -2.9081 -0.6031 38 1 4.7815 -2.7135 -1.5095 39 1 3.4513 -3.3093 -2.5311 40 1 3.4207 -4.7479 -0.1008 41 1 6.7484 -7.1348 -3.0252 42 1 8.2428 -8.3831 -4.2582 43 1 10.1838 -9.7166 -3.8587 44 1 7.5549 -11.1304 -1.7649 45 1 6.0133 -10.8666 0.0863 46 1 3.5031 -6.6658 0.9054 47 1 3.4839 -0.5865 -1.8233 48 1 1.8203 -1.1329 -2.2384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:42:33 Heat of formation + Delta-G solvation = -14.382020 kcal Electronic energy + Delta-G solvation = -27548.077324 eV Core-core repulsion = 23727.750418 eV Total energy + Delta-G solvation = -3820.326907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.33279 -40.50024 -39.16943 -37.76062 -37.27186 -34.62866 -34.22147 -32.19350 -30.89853 -29.97095 -29.08138 -28.35485 -27.60156 -26.57787 -24.87399 -23.98136 -23.51043 -22.83741 -21.30387 -20.64164 -19.16949 -18.46251 -18.00671 -17.60753 -17.01108 -16.94354 -16.67618 -16.24489 -15.97800 -15.73361 -15.58131 -15.17376 -14.67351 -14.55554 -14.41791 -14.30895 -14.10915 -13.82437 -13.78301 -13.63922 -13.40360 -13.33614 -13.21087 -13.11431 -13.05205 -12.59484 -12.49970 -12.21647 -12.17404 -12.08799 -11.86305 -11.82165 -11.60830 -11.34910 -11.05268 -10.76505 -10.73492 -10.34756 -10.25919 -10.18993 -10.05530 -8.81891 -0.61584 -0.14773 0.99247 0.99779 1.10454 1.48377 1.51858 1.77930 1.90265 2.02468 2.03943 2.08282 2.29517 2.47007 2.68757 3.02546 3.16755 3.50772 3.69903 3.72035 3.84607 3.88091 3.97667 4.07565 4.15177 4.21991 4.34955 4.39544 4.57695 4.57895 4.64942 4.68710 4.75760 4.82214 4.83913 4.85782 4.87270 4.88517 4.95426 5.09873 5.13716 5.17148 5.25476 5.27358 5.39313 5.45244 5.56125 5.59842 5.62788 5.64642 5.67263 6.25884 6.60831 6.75820 7.29161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.040 2.960 3 C -0.461 4.461 4 C -0.408 4.408 5 C -0.114 4.114 6 C -0.091 4.091 7 C 0.131 3.869 8 N -0.715 5.715 9 C 0.595 3.405 10 O -0.594 6.594 11 C -0.341 4.341 12 C 0.149 3.851 13 C -0.119 4.119 14 C -0.026 4.026 15 C -0.086 4.086 16 O -0.555 6.555 17 Si 0.986 3.014 18 H -0.275 1.275 19 H -0.241 1.241 20 H -0.243 1.243 21 C -0.146 4.146 22 C 0.110 3.890 23 N -0.273 5.273 24 N -0.338 5.338 25 C 0.131 3.869 26 C -0.405 4.405 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.412 0.588 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.404 0.596 44 H 0.190 0.810 45 H 0.207 0.793 46 H 0.235 0.765 47 H 0.077 0.923 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -1.383 0.443 1.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.233 2.767 3 C -0.568 4.568 4 C -0.493 4.493 5 C -0.151 4.151 6 C -0.110 4.110 7 C 0.008 3.992 8 N -0.366 5.366 9 C 0.385 3.615 10 O -0.476 6.476 11 C -0.355 4.355 12 C 0.028 3.972 13 C -0.139 4.139 14 C -0.032 4.032 15 C -0.195 4.195 16 O -0.365 6.365 17 Si 0.806 3.194 18 H -0.200 1.200 19 H -0.164 1.164 20 H -0.166 1.166 21 C -0.167 4.167 22 C -0.015 4.015 23 N -0.037 5.037 24 N -0.159 5.159 25 C -0.050 4.050 26 C -0.490 4.490 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.170 0.830 42 H 0.110 0.890 43 H 0.255 0.745 44 H 0.207 0.793 45 H 0.224 0.776 46 H 0.251 0.749 47 H 0.096 0.904 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.404 -2.735 0.680 3.149 hybrid contribution 0.448 1.038 -0.472 1.226 sum -0.956 -1.697 0.207 1.959 Atomic orbital electron populations 1.26175 1.20969 1.04662 1.04448 0.79415 0.65862 0.65355 0.66073 1.26246 1.06600 1.19550 1.04382 1.26615 1.05272 1.06796 1.10659 1.21786 0.99453 0.99713 0.94188 1.21869 0.98438 0.96350 0.94343 1.21456 0.99497 0.81444 0.96794 1.45674 1.45287 1.13594 1.32076 1.17043 0.78699 0.83236 0.82516 1.90741 1.48137 1.81004 1.27757 1.19719 1.13140 0.96805 1.05875 1.19530 0.96600 0.88836 0.92278 1.20674 0.96973 0.99058 0.97197 1.19775 0.94965 0.92629 0.95801 1.24812 0.86169 1.10094 0.98389 1.86435 1.17490 1.94028 1.38509 0.85203 0.79716 0.76802 0.77666 1.20033 1.16407 1.16638 1.21214 0.99350 1.02011 0.94156 1.22245 0.92311 0.87143 0.99844 1.46321 1.28261 1.10371 1.18738 1.77559 1.10441 1.16220 1.11643 1.24598 0.95729 0.91259 0.93412 1.26950 1.06794 1.04119 1.11150 0.91131 0.91323 0.90892 0.91436 0.91297 0.91222 0.89990 0.90574 0.91432 0.92590 0.88876 0.92761 0.92566 0.75129 0.82953 0.89038 0.74484 0.79268 0.77627 0.74926 0.90413 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.16 8.65 113.37 0.98 3.14 16 2 Si 1.04 -6.88 13.36 68.60 0.92 -5.96 16 3 C -0.46 1.55 8.65 113.37 0.98 2.53 16 4 C -0.41 1.96 5.85 72.72 0.43 2.38 16 5 C -0.11 0.38 5.16 31.53 0.16 0.55 16 6 C -0.09 0.29 2.19 -9.59 -0.02 0.27 16 7 C 0.13 0.33 5.05 86.38 0.44 0.76 16 8 N -0.71 -1.76 5.36 -467.18 -2.50 -4.26 16 9 C 0.60 5.95 7.78 86.42 0.67 6.62 16 10 O -0.59 -10.35 15.71 -4.41 -0.07 -10.42 16 11 C -0.34 -2.85 6.17 -19.90 -0.12 -2.98 16 12 C 0.15 1.42 6.76 39.49 0.27 1.69 16 13 C -0.12 -0.90 9.35 22.30 0.21 -0.69 16 14 C -0.03 -0.07 4.53 -19.82 -0.09 -0.16 16 15 C -0.09 0.20 2.81 71.24 0.20 0.40 16 16 O -0.56 1.54 12.76 -148.98 -1.90 -0.36 16 17 Si 0.99 -3.68 27.26 68.60 1.87 -1.81 16 18 H -0.28 -0.23 7.11 99.48 0.71 0.47 16 19 H -0.24 1.07 7.11 99.48 0.71 1.77 16 20 H -0.24 0.90 7.04 99.48 0.70 1.60 16 21 C -0.15 0.12 8.67 22.03 0.19 0.31 16 22 C 0.11 0.06 11.17 83.31 0.93 0.99 16 23 N -0.27 -1.90 3.86 -187.28 -0.72 -2.62 16 24 N -0.34 -2.41 12.57 -56.61 -0.71 -3.13 16 25 C 0.13 0.43 11.44 85.42 0.98 1.41 16 26 C -0.41 1.54 5.29 72.99 0.39 1.93 16 27 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 30 H 0.07 -0.17 7.96 -2.39 -0.02 -0.18 16 31 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 33 H 0.08 -0.46 8.04 -2.39 -0.02 -0.48 16 34 H 0.08 -0.30 8.04 -2.39 -0.02 -0.32 16 35 H 0.07 -0.31 7.55 -2.39 -0.02 -0.33 16 36 H 0.06 -0.07 8.04 -2.39 -0.02 -0.09 16 37 H 0.09 -0.53 8.13 -2.39 -0.02 -0.55 16 38 H 0.05 0.30 8.07 -2.39 -0.02 0.28 16 39 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.41 -1.67 6.76 -92.71 -0.63 -2.30 16 41 H 0.15 1.36 7.01 -2.91 -0.02 1.34 16 42 H 0.09 -0.37 7.71 -2.39 -0.02 -0.39 16 43 H 0.40 -4.75 8.74 -74.06 -0.65 -5.40 16 44 H 0.19 -1.25 7.50 -2.91 -0.02 -1.27 16 45 H 0.21 -1.31 8.06 -2.91 -0.02 -1.34 16 46 H 0.23 -1.54 7.46 -2.91 -0.02 -1.57 16 47 H 0.08 -0.19 8.03 -2.38 -0.02 -0.21 16 48 H 0.08 -0.35 8.06 -2.39 -0.02 -0.37 16 Total: 0.00 -23.86 394.77 3.91 -19.94 By element: Atomic # 1 Polarization: -10.98 SS G_CDS: 0.45 Total: -10.53 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 6.59 Total: 19.15 kcal Atomic # 7 Polarization: -6.07 SS G_CDS: -3.94 Total: -10.01 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.97 Total: -10.78 kcal Atomic # 14 Polarization: -10.56 SS G_CDS: 2.79 Total: -7.77 kcal Total: -23.86 3.91 -19.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.560 kcal (2) G-P(sol) polarization free energy of solvation -23.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds