Wall clock time and date at job start Sun Mar 7 2021 09:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86302 * 111.29064 * 2 1 4 4 C 1.89767 * 111.47088 * 234.85344 * 2 1 3 5 5 C 1.55912 * 99.33417 * 221.63263 * 4 2 1 6 6 C 1.53571 * 109.51099 * 40.64231 * 5 4 2 7 7 C 1.52995 * 109.12623 * 190.48250 * 6 5 4 8 8 N 1.46500 * 109.46898 * 296.79904 * 7 6 5 9 9 C 1.34779 * 120.00146 * 180.02562 * 8 7 6 10 10 O 1.21569 * 119.99682 * 0.02562 * 9 8 7 11 11 C 1.47695 * 120.00274 * 180.02562 * 9 8 7 12 12 C 1.39614 * 120.16272 * 359.72063 * 11 9 8 13 13 C 1.37902 * 119.87705 * 179.81552 * 12 11 9 14 14 C 1.50699 * 119.89256 * 180.18554 * 13 12 11 15 15 O 1.42897 * 109.47235 * 300.25489 * 14 13 12 16 16 Si 1.86307 * 109.47059 * 180.25311 * 14 13 12 17 17 H 1.48507 * 109.46885 * 60.00086 * 16 14 13 18 18 H 1.48500 * 109.46994 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47283 * 300.00494 * 16 14 13 20 20 C 1.38413 * 120.21507 * 0.44318 * 13 12 11 21 21 C 1.38247 * 120.34033 * 359.78733 * 20 13 12 22 22 C 1.38278 * 120.11821 * 0.02562 * 21 20 13 23 23 F 1.35100 * 120.11334 * 179.97438 * 22 21 20 24 24 C 1.55150 * 111.28712 * 310.96502 * 6 5 4 25 25 H 1.09001 * 109.47651 * 294.89802 * 1 2 3 26 26 H 1.09006 * 109.47443 * 54.90082 * 1 2 3 27 27 H 1.09004 * 109.47134 * 174.89451 * 1 2 3 28 28 H 1.08998 * 109.46955 * 185.10483 * 3 2 1 29 29 H 1.09005 * 109.46971 * 305.10070 * 3 2 1 30 30 H 1.08998 * 109.47177 * 65.10329 * 3 2 1 31 31 H 1.09001 * 111.40998 * 104.10465 * 4 2 1 32 32 H 1.09005 * 111.49319 * 339.18572 * 4 2 1 33 33 H 1.09003 * 109.47476 * 280.61131 * 5 4 2 34 34 H 1.09000 * 109.47314 * 160.66863 * 5 4 2 35 35 H 1.09003 * 109.12104 * 71.44202 * 6 5 4 36 36 H 1.08994 * 109.47416 * 56.79851 * 7 6 5 37 37 H 1.08998 * 109.47289 * 176.80327 * 7 6 5 38 38 H 0.97002 * 120.00483 * 0.02562 * 8 7 6 39 39 H 1.08005 * 120.06736 * 0.02562 * 12 11 9 40 40 H 1.09004 * 109.46849 * 60.25884 * 14 13 12 41 41 H 0.96705 * 114.00044 * 299.99641 * 15 14 13 42 42 H 1.08003 * 119.83295 * 179.76412 * 20 13 12 43 43 H 1.08008 * 119.94468 * 179.97438 * 21 20 13 44 44 H 1.09002 * 111.04873 * 146.60417 * 24 6 5 45 45 H 1.09000 * 111.04697 * 270.52848 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5394 1.7359 0.0000 4 6 2.5575 -1.0166 -1.4440 5 6 3.7202 -1.7455 -0.7039 6 6 3.2469 -2.1816 0.6905 7 6 4.4530 -2.6562 1.5035 8 7 5.0406 -3.8352 0.8624 9 6 6.1210 -4.4298 1.4061 10 8 6.6076 -3.9881 2.4289 11 6 6.7138 -5.6181 0.7595 12 6 6.1542 -6.1317 -0.4119 13 6 6.7147 -7.2391 -1.0128 14 6 6.1135 -7.7913 -2.2795 15 8 4.7577 -8.1721 -2.0368 16 14 7.0875 -9.2806 -2.8314 17 1 7.0473 -10.3191 -1.7707 18 1 6.4954 -9.8243 -4.0800 19 1 8.4964 -8.8849 -3.0836 20 6 7.8245 -7.8484 -0.4533 21 6 8.3830 -7.3501 0.7090 22 6 7.8346 -6.2381 1.3211 23 9 8.3801 -5.7516 2.4573 24 6 2.5556 -1.0133 1.4416 25 1 -0.3634 0.4326 0.9321 26 1 -0.3634 0.5909 -0.8408 27 1 -0.3634 -1.0236 -0.0915 28 1 3.6250 1.7027 -0.0914 29 1 2.1207 2.2890 -0.8408 30 1 2.2682 2.2315 0.9321 31 1 2.9333 -0.3729 -2.2393 32 1 1.8214 -1.7250 -1.8242 33 1 4.5686 -1.0685 -0.6045 34 1 4.0217 -2.6229 -1.2761 35 1 2.5417 -3.0063 0.5865 36 1 5.1958 -1.8600 1.5502 37 1 4.1322 -2.9136 2.5129 38 1 4.6522 -4.1879 0.0465 39 1 5.2859 -5.6606 -0.8486 40 1 6.1431 -7.0290 -3.0581 41 1 4.6555 -8.8490 -1.3538 42 1 8.2562 -8.7177 -0.9270 43 1 9.2488 -7.8308 1.1403 44 1 1.7542 -1.3800 2.0831 45 1 3.2792 -0.4340 2.0152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:02 Heat of formation + Delta-G solvation = -133.971660 kcal Electronic energy + Delta-G solvation = -25372.859315 eV Core-core repulsion = 21620.734359 eV Total energy + Delta-G solvation = -3752.124956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.05013 -41.38897 -40.01774 -37.94907 -37.41863 -34.85870 -32.77434 -32.28319 -30.37330 -29.09478 -28.37037 -27.23780 -26.61251 -25.12633 -24.02831 -22.91094 -21.61087 -20.75379 -19.29667 -18.39975 -18.32549 -17.50680 -17.05292 -16.84417 -16.40076 -16.19909 -16.00781 -15.72716 -15.68897 -15.17936 -14.94934 -14.63978 -14.44944 -14.30158 -13.83064 -13.81174 -13.70163 -13.68445 -13.40939 -13.31907 -13.21103 -13.12052 -12.87748 -12.50943 -12.26146 -12.21422 -12.06298 -11.85296 -11.66475 -11.41638 -11.29103 -10.75361 -10.49418 -10.46077 -10.37403 -10.24938 -10.11125 -9.82975 -0.53898 -0.06321 1.19557 1.51285 1.54588 1.59299 1.74869 1.97205 2.00758 2.03463 2.06157 2.45013 2.66721 3.01273 3.35736 3.43924 3.55935 3.65308 3.80874 3.94960 4.02743 4.07098 4.12040 4.45189 4.51921 4.59586 4.62693 4.66057 4.76184 4.77547 4.80034 4.81774 4.83052 4.84905 4.87359 4.88772 4.90509 5.09451 5.13785 5.22400 5.25332 5.37127 5.52492 5.55717 5.57591 5.62731 5.65538 6.34556 6.72672 7.02701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.037 2.963 3 C -0.461 4.461 4 C -0.403 4.403 5 C -0.119 4.119 6 C -0.087 4.087 7 C 0.124 3.876 8 N -0.707 5.707 9 C 0.550 3.450 10 O -0.575 6.575 11 C -0.187 4.187 12 C -0.021 4.021 13 C -0.132 4.132 14 C -0.073 4.073 15 O -0.548 6.548 16 Si 0.972 3.028 17 H -0.248 1.248 18 H -0.276 1.276 19 H -0.253 1.253 20 C -0.065 4.065 21 C -0.153 4.153 22 C 0.132 3.868 23 F -0.137 7.137 24 C -0.408 4.408 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.163 0.837 40 H 0.137 0.863 41 H 0.391 0.609 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.084 0.916 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.296 -2.364 -6.116 7.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.230 2.770 3 C -0.568 4.568 4 C -0.488 4.488 5 C -0.156 4.156 6 C -0.106 4.106 7 C 0.001 3.999 8 N -0.360 5.360 9 C 0.338 3.662 10 O -0.456 6.456 11 C -0.191 4.191 12 C -0.040 4.040 13 C -0.133 4.133 14 C -0.183 4.183 15 O -0.355 6.355 16 Si 0.797 3.203 17 H -0.172 1.172 18 H -0.201 1.201 19 H -0.177 1.177 20 C -0.082 4.082 21 C -0.171 4.171 22 C 0.111 3.889 23 F -0.115 7.115 24 C -0.493 4.493 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.253 0.747 39 H 0.180 0.820 40 H 0.155 0.845 41 H 0.240 0.760 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.103 0.897 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.620 -2.246 -6.053 6.968 hybrid contribution 0.216 0.058 0.939 0.966 sum -2.404 -2.189 -5.114 6.060 Atomic orbital electron populations 1.26185 1.21101 1.04683 1.04364 0.79456 0.65659 0.65600 0.66252 1.26254 1.06582 1.19553 1.04391 1.26741 1.03567 1.08387 1.10155 1.22008 0.98609 1.01000 0.94030 1.21681 0.95152 0.99442 0.94281 1.21626 0.95360 0.86316 0.96592 1.45887 1.29699 1.30857 1.29586 1.18372 0.80712 0.83332 0.83807 1.90836 1.62864 1.66062 1.25839 1.20093 0.99323 0.99430 1.00224 1.21210 0.98072 0.93846 0.90859 1.20516 0.96912 0.96793 0.99041 1.24985 0.88657 1.08480 0.96200 1.86509 1.23549 1.62734 1.62715 0.85346 0.78308 0.76671 0.79997 1.17203 1.20131 1.17707 1.21390 0.94272 0.98939 0.93632 1.21339 1.02848 0.95555 0.97362 1.18188 0.92857 0.94343 0.83469 1.91556 1.84481 1.87334 1.48174 1.26801 1.05472 1.05576 1.11458 0.91414 0.91183 0.90851 0.91496 0.91133 0.91391 0.90270 0.89701 0.92015 0.91015 0.89206 0.92373 0.92521 0.74679 0.81977 0.84531 0.75963 0.82702 0.81832 0.89710 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.20 8.65 113.37 0.98 3.18 16 2 Si 1.04 -7.20 13.37 68.60 0.92 -6.28 16 3 C -0.46 1.60 8.65 113.37 0.98 2.58 16 4 C -0.40 2.40 5.95 72.99 0.43 2.83 16 5 C -0.12 0.56 4.96 31.79 0.16 0.71 16 6 C -0.09 0.32 2.41 -9.87 -0.02 0.30 16 7 C 0.12 0.24 4.93 86.38 0.43 0.67 16 8 N -0.71 -1.00 5.28 -466.13 -2.46 -3.46 16 9 C 0.55 4.91 7.77 86.74 0.67 5.58 16 10 O -0.58 -10.80 15.34 -3.93 -0.06 -10.86 16 11 C -0.19 -0.83 5.88 -20.05 -0.12 -0.94 16 12 C -0.02 0.06 9.09 22.52 0.20 0.27 16 13 C -0.13 0.66 5.39 -19.90 -0.11 0.55 16 14 C -0.07 0.56 2.82 71.24 0.20 0.76 16 15 O -0.55 3.52 12.76 -148.98 -1.90 1.62 16 16 Si 0.97 -6.46 25.06 68.60 1.72 -4.74 16 17 H -0.25 1.64 7.11 99.48 0.71 2.35 16 18 H -0.28 0.56 7.11 99.48 0.71 1.27 16 19 H -0.25 1.44 7.11 99.48 0.71 2.14 16 20 C -0.06 0.28 8.66 22.31 0.19 0.48 16 21 C -0.15 0.06 10.01 22.28 0.22 0.29 16 22 C 0.13 0.87 7.29 22.67 0.17 1.03 16 23 F -0.14 -1.88 15.55 44.97 0.70 -1.18 16 24 C -0.41 1.68 5.27 72.72 0.38 2.07 16 25 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 26 H 0.07 -0.32 7.96 -2.38 -0.02 -0.33 16 27 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 28 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 29 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 30 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H 0.08 -0.44 8.06 -2.39 -0.02 -0.46 16 32 H 0.08 -0.57 8.06 -2.38 -0.02 -0.58 16 33 H 0.06 -0.20 8.09 -2.39 -0.02 -0.21 16 34 H 0.07 -0.45 7.35 -2.39 -0.02 -0.47 16 35 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 37 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.41 -2.13 5.65 -92.71 -0.52 -2.65 16 39 H 0.16 -1.32 6.40 -2.91 -0.02 -1.33 16 40 H 0.14 -1.39 7.96 -2.38 -0.02 -1.41 16 41 H 0.39 -4.75 8.70 -74.05 -0.64 -5.40 16 42 H 0.16 -1.33 4.86 -2.91 -0.01 -1.35 16 43 H 0.16 -0.70 8.06 -2.91 -0.02 -0.72 16 44 H 0.08 -0.38 8.04 -2.39 -0.02 -0.40 16 45 H 0.08 -0.20 7.84 -2.39 -0.02 -0.22 16 Total: 0.00 -19.95 367.66 4.28 -15.66 By element: Atomic # 1 Polarization: -11.73 SS G_CDS: 0.59 Total: -11.13 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 4.77 Total: 20.36 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -2.46 Total: -3.46 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -1.96 Total: -9.24 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.70 Total: -1.18 kcal Atomic # 14 Polarization: -13.65 SS G_CDS: 2.64 Total: -11.01 kcal Total: -19.95 4.28 -15.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.308 kcal (2) G-P(sol) polarization free energy of solvation -19.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds