Wall clock time and date at job start Sun Mar 7 2021 09:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53005 * 109.12306 * 169.41478 * 6 5 4 8 8 N 1.46496 * 109.46684 * 66.45482 * 7 6 5 9 9 C 1.34779 * 119.99683 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99990 * 359.97438 * 9 8 7 11 11 C 1.47578 * 120.00334 * 179.97438 * 9 8 7 12 12 C 1.40204 * 119.82953 * 359.97438 * 11 9 8 13 13 C 1.36228 * 120.38023 * 179.97438 * 12 11 9 14 14 C 1.39882 * 119.96140 * 0.02801 * 13 12 11 15 15 C 1.46251 * 133.84449 * 180.02562 * 14 13 12 16 16 C 1.50700 * 126.48726 * 359.95144 * 15 14 13 17 17 O 1.42897 * 109.46899 * 285.00548 * 16 15 14 18 18 Si 1.86299 * 109.47454 * 165.00150 * 16 15 14 19 19 H 1.48503 * 109.47038 * 59.99886 * 18 16 15 20 20 H 1.48496 * 109.47197 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46912 * 300.00215 * 18 16 15 22 22 C 1.34463 * 107.03314 * 179.97438 * 15 14 13 23 23 N 1.36560 * 109.98641 * 359.97438 * 22 15 14 24 24 C 1.37831 * 109.85986 * 359.97438 * 23 22 15 25 25 C 1.38646 * 133.37932 * 180.35295 * 24 23 22 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 38 38 H 1.09000 * 109.46644 * 186.45324 * 7 6 5 39 39 H 1.09000 * 109.46972 * 306.45125 * 7 6 5 40 40 H 0.96999 * 120.00775 * 359.97438 * 8 7 6 41 41 H 1.08002 * 119.81317 * 359.97438 * 12 11 9 42 42 H 1.08003 * 120.02335 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.46916 * 44.99928 * 16 15 14 44 44 H 0.96703 * 113.99811 * 299.99617 * 17 16 15 45 45 H 1.08000 * 125.00762 * 180.02562 * 22 15 14 46 46 H 0.96998 * 125.07304 * 180.02562 * 23 22 15 47 47 H 1.08004 * 120.16751 * 359.90467 * 25 24 23 48 48 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 49 49 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4527 -2.6558 -1.5012 8 7 4.9946 -3.8785 -0.9033 9 6 6.0678 -4.4796 -1.4542 10 8 6.5858 -4.0073 -2.4478 11 6 6.6141 -5.7110 -0.8517 12 6 6.0144 -6.2522 0.2942 13 6 6.5092 -7.3887 0.8594 14 6 7.6222 -8.0216 0.2961 15 6 8.3864 -9.2209 0.6378 16 6 8.1266 -10.1492 1.7961 17 8 8.5605 -9.5306 3.0089 18 14 9.0636 -11.7390 1.5401 19 1 10.5174 -11.4485 1.4550 20 1 8.8070 -12.6540 2.6812 21 1 8.6126 -12.3818 0.2798 22 6 9.3651 -9.3382 -0.2768 23 7 9.2892 -8.3129 -1.1757 24 6 8.2327 -7.4874 -0.8563 25 6 7.7186 -6.3340 -1.4287 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8198 -1.7216 1.8247 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5407 -3.0062 -0.5835 38 1 4.1428 -2.8590 -2.5262 39 1 5.2187 -1.8803 -1.5001 40 1 4.5816 -4.2551 -0.1105 41 1 5.1552 -5.7654 0.7315 42 1 6.0429 -7.8004 1.7423 43 1 7.0595 -10.3624 1.8586 44 1 9.5025 -9.3122 3.0239 45 1 10.1019 -10.1274 -0.2980 46 1 9.8889 -8.1851 -1.9273 47 1 8.1758 -5.9171 -2.3140 48 1 1.7543 -1.3787 -2.0838 49 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:19 Heat of formation + Delta-G solvation = -64.266484 kcal Electronic energy + Delta-G solvation = -27215.255372 eV Core-core repulsion = 23458.191224 eV Total energy + Delta-G solvation = -3757.064148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.45410 -40.70875 -38.14698 -37.71666 -37.34970 -34.58845 -33.22810 -31.09378 -30.68429 -30.12773 -29.24722 -28.52616 -27.09196 -26.42929 -24.49951 -23.75734 -23.57264 -21.34688 -20.89545 -20.70290 -19.35299 -18.39231 -17.76006 -17.09450 -16.88711 -16.45077 -16.14116 -15.94191 -15.83747 -15.56854 -15.16654 -14.97465 -14.73587 -14.67090 -14.60742 -14.38701 -14.17203 -13.95908 -13.95829 -13.75888 -13.49974 -13.39114 -13.26214 -13.10424 -12.67061 -12.53249 -12.48077 -12.30929 -12.22130 -12.07403 -11.89856 -11.77590 -11.51434 -10.93454 -10.90831 -10.72334 -10.48030 -10.39529 -10.33799 -9.97731 -9.31806 -8.78649 -0.21903 0.43576 1.14707 1.34556 1.40765 1.50154 1.57138 1.83441 1.86397 1.89240 1.93155 2.09018 2.34251 2.52504 2.99207 3.55881 3.59330 3.72656 3.78010 3.81229 3.89402 3.98014 4.04847 4.15707 4.34732 4.45685 4.48276 4.49583 4.54836 4.56748 4.59803 4.67118 4.69968 4.70668 4.71174 4.77030 4.80120 4.93033 5.01738 5.03305 5.10168 5.22450 5.28262 5.35939 5.41267 5.44597 5.47482 5.49088 5.50166 5.58099 5.64087 6.01957 6.37559 6.58375 6.62885 7.32803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.443 4.443 4 C -0.397 4.397 5 C -0.116 4.116 6 C -0.094 4.094 7 C 0.125 3.875 8 N -0.726 5.726 9 C 0.561 3.439 10 O -0.540 6.540 11 C -0.120 4.120 12 C -0.114 4.114 13 C -0.071 4.071 14 C -0.062 4.062 15 C -0.209 4.209 16 C -0.043 4.043 17 O -0.540 6.540 18 Si 0.946 3.054 19 H -0.253 1.253 20 H -0.250 1.250 21 H -0.250 1.250 22 C 0.067 3.933 23 N -0.584 5.584 24 C 0.082 3.918 25 C -0.058 4.058 26 C -0.393 4.393 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.374 0.626 45 H 0.173 0.827 46 H 0.422 0.578 47 H 0.135 0.865 48 H 0.081 0.919 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -1.260 1.709 2.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.551 4.551 4 C -0.483 4.483 5 C -0.153 4.153 6 C -0.113 4.113 7 C 0.002 3.998 8 N -0.379 5.379 9 C 0.349 3.651 10 O -0.418 6.418 11 C -0.124 4.124 12 C -0.134 4.134 13 C -0.089 4.089 14 C -0.067 4.067 15 C -0.217 4.217 16 C -0.155 4.155 17 O -0.345 6.345 18 Si 0.768 3.232 19 H -0.177 1.177 20 H -0.173 1.173 21 H -0.174 1.174 22 C -0.062 4.062 23 N -0.186 5.186 24 C -0.025 4.025 25 C -0.079 4.079 26 C -0.479 4.479 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.132 0.868 44 H 0.221 0.779 45 H 0.190 0.810 46 H 0.259 0.741 47 H 0.153 0.847 48 H 0.100 0.900 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.332 -1.712 0.907 1.965 hybrid contribution 0.564 0.250 -0.198 0.648 sum 0.232 -1.462 0.709 1.641 Atomic orbital electron populations 1.26025 1.20077 1.04547 1.04454 0.80513 0.67294 0.67651 0.68048 1.26022 1.06655 1.17952 1.04482 1.26658 1.03669 1.08103 1.09914 1.21985 0.98430 1.00683 0.94220 1.21731 0.96207 0.98915 0.94450 1.21577 0.95283 0.85824 0.97135 1.45984 1.31627 1.28090 1.32152 1.18165 0.79925 0.83602 0.83445 1.90793 1.59846 1.65630 1.25576 1.19457 0.98231 0.96787 0.97952 1.20692 1.00295 0.96783 0.95624 1.20211 0.94589 0.94664 0.99477 1.19139 0.96766 0.95623 0.95182 1.20719 0.99864 0.99822 1.01252 1.24263 1.05983 1.02135 0.83103 1.86520 1.30142 1.82537 1.35264 0.85802 0.79264 0.76678 0.81466 1.17702 1.17337 1.17379 1.21779 1.00217 0.92959 0.91216 1.41700 1.27389 1.22312 1.27181 1.18090 0.91833 0.94843 0.97698 1.20070 0.95526 0.92466 0.99834 1.26627 1.05403 1.05318 1.10537 0.91212 0.91164 0.91080 0.91177 0.91065 0.91137 0.90360 0.90355 0.91436 0.91724 0.90385 0.91210 0.91208 0.76352 0.85672 0.85022 0.86756 0.77889 0.81032 0.74058 0.84670 0.90018 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.86 8.65 101.05 0.87 1.74 16 2 Si 0.97 -3.00 13.35 -169.99 -2.27 -5.26 16 3 C -0.44 0.76 8.65 101.05 0.87 1.63 16 4 C -0.40 0.85 5.95 38.72 0.23 1.08 16 5 C -0.12 0.19 5.01 -24.87 -0.12 0.07 16 6 C -0.09 0.15 2.37 -89.07 -0.21 -0.06 16 7 C 0.12 0.07 4.91 -4.04 -0.02 0.05 16 8 N -0.73 -0.54 5.31 -61.33 -0.33 -0.87 16 9 C 0.56 2.07 7.76 -12.45 -0.10 1.97 16 10 O -0.54 -3.96 16.31 5.28 0.09 -3.88 16 11 C -0.12 -0.30 5.87 -104.95 -0.62 -0.91 16 12 C -0.11 -0.07 9.46 -39.57 -0.37 -0.45 16 13 C -0.07 -0.08 10.03 -39.69 -0.40 -0.48 16 14 C -0.06 -0.12 6.35 -105.04 -0.67 -0.79 16 15 C -0.21 -0.07 5.57 -102.74 -0.57 -0.64 16 16 C -0.04 0.03 3.06 36.01 0.11 0.14 16 17 O -0.54 -0.08 12.88 -35.23 -0.45 -0.53 16 18 Si 0.95 -1.47 26.08 -169.99 -4.43 -5.90 16 19 H -0.25 0.50 7.03 56.52 0.40 0.90 16 20 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 21 H -0.25 0.19 7.11 56.52 0.40 0.59 16 22 C 0.07 -0.07 10.43 -16.78 -0.17 -0.25 16 23 N -0.58 0.41 6.07 -10.68 -0.06 0.34 16 24 C 0.08 0.15 7.26 -84.00 -0.61 -0.46 16 25 C -0.06 -0.15 9.61 -39.03 -0.37 -0.52 16 26 C -0.39 0.79 5.28 38.41 0.20 0.99 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.08 -0.15 8.06 -51.93 -0.42 -0.57 16 34 H 0.08 -0.17 8.06 -51.93 -0.42 -0.59 16 35 H 0.07 -0.08 8.05 -51.93 -0.42 -0.50 16 36 H 0.06 -0.12 7.55 -51.93 -0.39 -0.52 16 37 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.07 0.11 8.13 -51.93 -0.42 -0.31 16 39 H 0.07 0.10 8.07 -51.93 -0.42 -0.32 16 40 H 0.40 -0.68 5.82 -40.82 -0.24 -0.92 16 41 H 0.13 -0.26 6.36 -52.49 -0.33 -0.60 16 42 H 0.13 -0.03 8.06 -52.48 -0.42 -0.46 16 43 H 0.11 -0.13 7.96 -51.93 -0.41 -0.55 16 44 H 0.37 -1.13 8.70 45.56 0.40 -0.73 16 45 H 0.17 -0.66 6.29 -52.49 -0.33 -0.99 16 46 H 0.42 -1.43 8.96 -40.82 -0.37 -1.80 16 47 H 0.14 0.33 7.62 -52.48 -0.40 -0.07 16 48 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 49 H 0.08 -0.14 7.84 -51.93 -0.41 -0.55 16 LS Contribution 396.96 15.07 5.98 5.98 Total: 0.00 -8.41 396.96 -10.55 -18.96 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: -7.12 Total: -11.96 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.95 Total: 3.12 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.39 Total: -0.52 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.37 Total: -4.41 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: -6.70 Total: -11.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -8.41 -10.55 -18.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.305 kcal (2) G-P(sol) polarization free energy of solvation -8.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds