Wall clock time and date at job start Sun Mar 7 2021 09:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53005 * 109.12306 * 169.41478 * 6 5 4 8 8 N 1.46496 * 109.46684 * 66.45482 * 7 6 5 9 9 C 1.34779 * 119.99683 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99990 * 359.97438 * 9 8 7 11 11 C 1.47578 * 120.00334 * 179.97438 * 9 8 7 12 12 C 1.40204 * 119.82953 * 359.97438 * 11 9 8 13 13 C 1.36228 * 120.38023 * 179.97438 * 12 11 9 14 14 C 1.39882 * 119.96140 * 0.02801 * 13 12 11 15 15 C 1.46251 * 133.84449 * 180.02562 * 14 13 12 16 16 C 1.50700 * 126.48726 * 359.95144 * 15 14 13 17 17 O 1.42897 * 109.46899 * 285.00548 * 16 15 14 18 18 Si 1.86299 * 109.47454 * 165.00150 * 16 15 14 19 19 H 1.48503 * 109.47038 * 59.99886 * 18 16 15 20 20 H 1.48496 * 109.47197 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46912 * 300.00215 * 18 16 15 22 22 C 1.34463 * 107.03314 * 179.97438 * 15 14 13 23 23 N 1.36560 * 109.98641 * 359.97438 * 22 15 14 24 24 C 1.37831 * 109.85986 * 359.97438 * 23 22 15 25 25 C 1.38646 * 133.37932 * 180.35295 * 24 23 22 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.09003 * 111.42412 * 20.82559 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09001 * 109.12873 * 288.55222 * 6 5 4 38 38 H 1.09000 * 109.46644 * 186.45324 * 7 6 5 39 39 H 1.09000 * 109.46972 * 306.45125 * 7 6 5 40 40 H 0.96999 * 120.00775 * 359.97438 * 8 7 6 41 41 H 1.08002 * 119.81317 * 359.97438 * 12 11 9 42 42 H 1.08003 * 120.02335 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.46916 * 44.99928 * 16 15 14 44 44 H 0.96703 * 113.99811 * 299.99617 * 17 16 15 45 45 H 1.08000 * 125.00762 * 180.02562 * 22 15 14 46 46 H 0.96998 * 125.07304 * 180.02562 * 23 22 15 47 47 H 1.08004 * 120.16751 * 359.90467 * 25 24 23 48 48 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 49 49 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4527 -2.6558 -1.5012 8 7 4.9946 -3.8785 -0.9033 9 6 6.0678 -4.4796 -1.4542 10 8 6.5858 -4.0073 -2.4478 11 6 6.6141 -5.7110 -0.8517 12 6 6.0144 -6.2522 0.2942 13 6 6.5092 -7.3887 0.8594 14 6 7.6222 -8.0216 0.2961 15 6 8.3864 -9.2209 0.6378 16 6 8.1266 -10.1492 1.7961 17 8 8.5605 -9.5306 3.0089 18 14 9.0636 -11.7390 1.5401 19 1 10.5174 -11.4485 1.4550 20 1 8.8070 -12.6540 2.6812 21 1 8.6126 -12.3818 0.2798 22 6 9.3651 -9.3382 -0.2768 23 7 9.2892 -8.3129 -1.1757 24 6 8.2327 -7.4874 -0.8563 25 6 7.7186 -6.3340 -1.4287 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8198 -1.7216 1.8247 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5407 -3.0062 -0.5835 38 1 4.1428 -2.8590 -2.5262 39 1 5.2187 -1.8803 -1.5001 40 1 4.5816 -4.2551 -0.1105 41 1 5.1552 -5.7654 0.7315 42 1 6.0429 -7.8004 1.7423 43 1 7.0595 -10.3624 1.8586 44 1 9.5025 -9.3122 3.0239 45 1 10.1019 -10.1274 -0.2980 46 1 9.8889 -8.1851 -1.9273 47 1 8.1758 -5.9171 -2.3140 48 1 1.7543 -1.3787 -2.0838 49 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_12335838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:45:19 Heat of formation + Delta-G solvation = -59.924022 kcal Electronic energy + Delta-G solvation = -27215.067069 eV Core-core repulsion = 23458.191224 eV Total energy + Delta-G solvation = -3756.875845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46790 -40.91881 -38.13855 -37.71885 -37.41254 -34.70284 -33.24936 -31.10477 -30.71802 -30.06424 -29.08566 -28.36083 -27.10025 -26.36401 -24.47269 -23.76641 -23.61970 -21.49530 -20.87057 -20.64211 -19.37672 -18.42809 -17.76925 -17.15638 -16.96036 -16.56151 -16.09656 -15.94114 -15.84197 -15.55493 -15.14948 -15.02669 -14.78777 -14.63876 -14.54839 -14.39600 -14.23766 -13.81831 -13.80451 -13.67645 -13.37467 -13.28722 -13.13921 -13.08267 -12.65340 -12.49458 -12.40357 -12.24723 -12.18363 -12.02188 -11.82786 -11.69200 -11.39967 -11.20087 -10.78848 -10.74345 -10.36986 -10.27562 -10.25819 -10.11881 -9.37374 -8.79924 -0.33302 0.37507 1.27207 1.37057 1.52414 1.61418 1.76576 1.90693 1.93745 2.01376 2.03983 2.07229 2.28706 2.68030 2.87105 3.59083 3.64836 3.75411 3.82980 3.86475 3.91625 4.05023 4.09942 4.15568 4.29852 4.47900 4.53264 4.55115 4.61391 4.63328 4.67292 4.80240 4.81244 4.82691 4.84201 4.85701 4.87993 4.90187 4.98749 5.15562 5.21935 5.23786 5.31532 5.38624 5.41959 5.50054 5.54450 5.58838 5.61729 5.63839 5.66171 5.97713 6.46377 6.50095 6.84785 7.12961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.039 2.961 3 C -0.461 4.461 4 C -0.405 4.405 5 C -0.119 4.119 6 C -0.087 4.087 7 C 0.124 3.876 8 N -0.711 5.711 9 C 0.557 3.443 10 O -0.587 6.587 11 C -0.135 4.135 12 C -0.109 4.109 13 C -0.079 4.079 14 C -0.079 4.079 15 C -0.226 4.226 16 C -0.046 4.046 17 O -0.557 6.557 18 Si 0.987 3.013 19 H -0.240 1.240 20 H -0.277 1.277 21 H -0.260 1.260 22 C 0.078 3.922 23 N -0.578 5.578 24 C 0.067 3.933 25 C -0.069 4.069 26 C -0.407 4.407 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.414 0.586 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.113 0.887 44 H 0.386 0.614 45 H 0.203 0.797 46 H 0.433 0.567 47 H 0.126 0.874 48 H 0.084 0.916 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -2.090 2.671 3.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.233 2.767 3 C -0.568 4.568 4 C -0.491 4.491 5 C -0.156 4.156 6 C -0.106 4.106 7 C 0.001 3.999 8 N -0.363 5.363 9 C 0.346 3.654 10 O -0.469 6.469 11 C -0.140 4.140 12 C -0.128 4.128 13 C -0.098 4.098 14 C -0.084 4.084 15 C -0.233 4.233 16 C -0.156 4.156 17 O -0.364 6.364 18 Si 0.810 3.190 19 H -0.163 1.163 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.051 4.051 23 N -0.182 5.182 24 C -0.040 4.040 25 C -0.091 4.091 26 C -0.492 4.492 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.252 0.748 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.131 0.869 44 H 0.235 0.765 45 H 0.219 0.781 46 H 0.273 0.727 47 H 0.144 0.856 48 H 0.103 0.897 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.517 -2.520 1.879 3.185 hybrid contribution 0.632 0.497 -0.486 0.940 sum 0.115 -2.023 1.393 2.459 Atomic orbital electron populations 1.26185 1.21136 1.04637 1.04372 0.79412 0.65598 0.65551 0.66176 1.26249 1.06556 1.19553 1.04406 1.26757 1.03579 1.08429 1.10306 1.22008 0.98563 1.00924 0.94139 1.21719 0.95267 0.99423 0.94206 1.21616 0.95852 0.85364 0.97084 1.45914 1.30594 1.27714 1.32096 1.18445 0.80139 0.83874 0.82946 1.90759 1.61430 1.66994 1.27681 1.19480 0.98836 0.96698 0.98957 1.20907 1.00660 0.96568 0.94700 1.20441 0.94613 0.94787 0.99929 1.19532 0.97179 0.96361 0.95302 1.20901 1.00363 0.99816 1.02241 1.24390 1.06368 1.02375 0.82480 1.86482 1.31450 1.82734 1.35738 0.85213 0.79505 0.74734 0.79551 1.16301 1.20228 1.18400 1.22269 0.99951 0.92809 0.90079 1.41784 1.26889 1.21900 1.27584 1.18138 0.92813 0.95017 0.98045 1.20111 0.95987 0.93116 0.99872 1.26817 1.05482 1.05537 1.11367 0.91390 0.91189 0.90907 0.91167 0.91514 0.91330 0.90382 0.89805 0.92037 0.91232 0.89252 0.92480 0.92392 0.74777 0.83091 0.83747 0.86879 0.76470 0.78069 0.72688 0.85584 0.89675 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.07 8.65 113.37 0.98 3.05 16 2 Si 1.04 -6.87 13.35 68.60 0.92 -5.95 16 3 C -0.46 1.49 8.65 113.37 0.98 2.47 16 4 C -0.41 2.07 5.95 72.99 0.43 2.51 16 5 C -0.12 0.44 5.01 31.80 0.16 0.60 16 6 C -0.09 0.28 2.37 -9.79 -0.02 0.25 16 7 C 0.12 0.29 4.91 86.38 0.42 0.71 16 8 N -0.71 -1.64 5.31 -466.21 -2.47 -4.11 16 9 C 0.56 5.08 7.76 86.71 0.67 5.75 16 10 O -0.59 -10.21 16.31 -4.02 -0.07 -10.27 16 11 C -0.14 -0.85 5.87 -20.08 -0.12 -0.97 16 12 C -0.11 -0.15 9.46 22.28 0.21 0.06 16 13 C -0.08 -0.18 10.03 22.20 0.22 0.04 16 14 C -0.08 -0.32 6.35 -20.14 -0.13 -0.45 16 15 C -0.23 -0.03 5.57 -18.64 -0.10 -0.14 16 16 C -0.05 0.09 3.06 71.24 0.22 0.31 16 17 O -0.56 0.08 12.88 -148.98 -1.92 -1.84 16 18 Si 0.99 -4.03 26.08 68.60 1.79 -2.24 16 19 H -0.24 1.52 7.03 99.48 0.70 2.22 16 20 H -0.28 -0.11 7.11 99.48 0.71 0.59 16 21 H -0.26 0.66 7.11 99.48 0.71 1.37 16 22 C 0.08 -0.26 10.43 83.09 0.87 0.61 16 23 N -0.58 0.92 6.07 -187.71 -1.14 -0.22 16 24 C 0.07 0.29 7.26 38.96 0.28 0.57 16 25 C -0.07 -0.48 9.61 22.63 0.22 -0.26 16 26 C -0.41 1.60 5.28 72.79 0.38 1.98 16 27 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 29 H 0.07 -0.34 7.96 -2.38 -0.02 -0.35 16 30 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 33 H 0.08 -0.36 8.06 -2.39 -0.02 -0.38 16 34 H 0.08 -0.48 8.06 -2.39 -0.02 -0.50 16 35 H 0.06 -0.14 8.05 -2.39 -0.02 -0.16 16 36 H 0.07 -0.32 7.55 -2.39 -0.02 -0.34 16 37 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 39 H 0.06 0.28 8.07 -2.39 -0.02 0.26 16 40 H 0.41 -1.50 5.82 -92.71 -0.54 -2.04 16 41 H 0.15 -0.77 6.36 -2.91 -0.02 -0.79 16 42 H 0.14 -0.13 8.06 -2.91 -0.02 -0.16 16 43 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 44 H 0.39 -2.58 8.70 -74.06 -0.64 -3.22 16 45 H 0.20 -2.03 6.29 -2.91 -0.02 -2.05 16 46 H 0.43 -3.02 8.96 -92.71 -0.83 -3.85 16 47 H 0.13 0.98 7.62 -2.91 -0.02 0.95 16 48 H 0.08 -0.38 8.04 -2.39 -0.02 -0.40 16 49 H 0.08 -0.20 7.84 -2.39 -0.02 -0.22 16 Total: 0.00 -20.80 396.96 2.50 -18.30 By element: Atomic # 1 Polarization: -10.48 SS G_CDS: -0.29 Total: -10.77 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.68 Total: 17.10 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: -3.61 Total: -4.33 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.98 Total: -12.11 kcal Atomic # 14 Polarization: -10.89 SS G_CDS: 2.71 Total: -8.19 kcal Total: -20.80 2.50 -18.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12335838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.626 kcal (2) G-P(sol) polarization free energy of solvation -20.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds