Wall clock time and date at job start Sun Mar 7 2021 09:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86309 * 111.23755 * 2 1 4 4 C 1.89330 * 111.46206 * 125.06555 * 2 1 3 5 5 C 1.55147 * 101.34926 * 120.85695 * 4 2 1 6 6 C 1.53576 * 111.28868 * 331.41380 * 5 4 2 7 7 C 1.52993 * 109.47002 * 169.06522 * 6 5 4 8 8 N 1.46498 * 109.47534 * 66.45396 * 7 6 5 9 9 C 1.34781 * 119.99941 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00281 * 0.02562 * 9 8 7 11 11 C 1.47845 * 119.99757 * 179.97438 * 9 8 7 12 12 C 1.39558 * 120.14148 * 180.02562 * 11 9 8 13 13 C 1.37983 * 119.87481 * 179.97438 * 12 11 9 14 14 C 1.50702 * 119.91937 * 180.02562 * 13 12 11 15 15 O 1.42895 * 109.47497 * 299.97014 * 14 13 12 16 16 Si 1.86303 * 109.46970 * 179.97438 * 14 13 12 17 17 H 1.48497 * 109.47283 * 300.00118 * 16 14 13 18 18 H 1.48501 * 109.47092 * 59.99873 * 16 14 13 19 19 H 1.48501 * 109.47111 * 179.97438 * 16 14 13 20 20 C 1.38318 * 120.15634 * 359.97438 * 13 12 11 21 21 C 1.38465 * 120.28303 * 0.02562 * 20 13 12 22 22 Br 1.89103 * 119.93528 * 179.97438 * 21 20 13 23 23 C 1.38029 * 120.12477 * 359.97438 * 21 20 13 24 24 C 1.55912 * 109.50636 * 49.03863 * 6 5 4 25 25 H 1.08997 * 109.47343 * 294.93355 * 1 2 3 26 26 H 1.09000 * 109.46948 * 54.93420 * 1 2 3 27 27 H 1.08999 * 109.46585 * 174.93273 * 1 2 3 28 28 H 1.09003 * 109.46645 * 185.06313 * 3 2 1 29 29 H 1.08992 * 109.46877 * 305.06510 * 3 2 1 30 30 H 1.08997 * 109.46777 * 65.07136 * 3 2 1 31 31 H 1.09009 * 111.04424 * 2.83681 * 4 2 1 32 32 H 1.09006 * 111.08275 * 238.89391 * 4 2 1 33 33 H 1.09005 * 109.12012 * 210.93618 * 5 4 2 34 34 H 1.08993 * 109.12524 * 91.89926 * 5 4 2 35 35 H 1.09007 * 109.47083 * 289.06132 * 6 5 4 36 36 H 1.09000 * 109.47220 * 306.45172 * 7 6 5 37 37 H 1.09004 * 109.47403 * 186.45861 * 7 6 5 38 38 H 0.96996 * 119.99717 * 359.97438 * 8 7 6 39 39 H 1.08001 * 120.06351 * 359.95529 * 12 11 9 40 40 H 1.08999 * 109.47275 * 59.97403 * 14 13 12 41 41 H 0.96700 * 114.00596 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.85637 * 180.27995 * 20 13 12 43 43 H 1.08000 * 120.07878 * 179.97438 * 23 21 20 44 44 H 1.08999 * 111.42554 * 76.90691 * 24 6 5 45 45 H 1.08997 * 111.42671 * 201.84753 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5379 1.7366 0.0000 4 6 2.5557 -1.0123 1.4422 5 6 3.3935 -2.0804 0.6909 6 6 2.8149 -2.3636 -0.7032 7 6 3.8087 -3.2047 -1.5066 8 7 3.9331 -4.5302 -0.8952 9 6 4.7591 -5.4473 -1.4367 10 8 5.4013 -5.1744 -2.4320 11 6 4.8850 -6.7847 -0.8193 12 6 5.7398 -7.7364 -1.3771 13 6 5.8535 -8.9828 -0.7961 14 6 6.7767 -10.0110 -1.3973 15 8 6.3698 -10.2906 -2.7383 16 14 6.7054 -11.5753 -0.3880 17 1 7.1282 -11.2850 1.0056 18 1 5.3159 -12.0993 -0.3846 19 1 7.6146 -12.5888 -0.9808 20 6 5.1229 -9.2902 0.3374 21 6 4.2728 -8.3510 0.8963 22 35 3.2780 -8.7821 2.4457 23 6 4.1502 -7.1006 0.3247 24 6 2.5569 -1.0158 -1.4434 25 1 -0.3634 0.4332 0.9318 26 1 -0.3633 0.5904 -0.8411 27 1 -0.3632 -1.0237 -0.0908 28 1 3.6236 1.7043 -0.0907 29 1 2.1192 2.2890 -0.8411 30 1 2.2657 2.2321 0.9319 31 1 1.7533 -1.4764 2.0158 32 1 3.1882 -0.3987 2.0838 33 1 3.3972 -3.0037 1.2703 34 1 4.4176 -1.7223 0.5865 35 1 1.8758 -2.9080 -0.6031 36 1 4.7816 -2.7132 -1.5095 37 1 3.4515 -3.3092 -2.5311 38 1 3.4209 -4.7477 -0.1007 39 1 6.3111 -7.4979 -2.2621 40 1 7.7966 -9.6264 -1.3998 41 1 6.9204 -10.9460 -3.1880 42 1 5.2189 -10.2657 0.7908 43 1 3.4866 -6.3687 0.7610 44 1 3.4839 -0.5864 -1.8232 45 1 1.8204 -1.1328 -2.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:57:33 Heat of formation + Delta-G solvation = -85.126646 kcal Electronic energy + Delta-G solvation = -24593.112580 eV Core-core repulsion = 20972.741675 eV Total energy + Delta-G solvation = -3620.370905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 385.062 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59180 -40.04437 -37.90227 -37.65638 -34.91991 -33.69306 -33.13346 -30.52976 -30.40051 -29.09579 -28.36571 -27.42781 -26.91868 -24.82766 -23.86133 -22.70341 -21.49079 -20.72173 -18.95138 -18.55137 -17.72169 -17.60929 -16.67708 -16.51410 -16.19663 -15.79963 -15.56890 -15.25867 -14.92642 -14.74130 -14.63843 -14.43058 -14.19939 -13.83691 -13.79495 -13.69081 -13.62292 -13.42931 -13.23041 -13.12717 -12.81863 -12.52972 -12.44837 -12.19205 -12.11553 -11.96224 -11.87008 -11.83685 -11.55725 -11.38119 -11.24506 -10.74703 -10.56268 -10.37518 -10.35991 -10.22544 -10.06669 -9.91997 -0.55359 -0.18237 0.36490 1.07391 1.40954 1.45417 1.52209 1.74837 1.86126 2.00565 2.04043 2.07173 2.43928 2.66768 3.16806 3.35175 3.64551 3.73295 3.81832 3.86134 3.96295 4.03619 4.09333 4.16040 4.29199 4.50608 4.53105 4.61452 4.65055 4.71439 4.79367 4.82072 4.83753 4.84936 4.87026 4.89025 4.91576 5.06291 5.13759 5.24786 5.24911 5.35847 5.38117 5.53333 5.57347 5.62521 5.65986 6.34902 6.76749 7.01760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.039 2.961 3 C -0.461 4.461 4 C -0.408 4.408 5 C -0.115 4.115 6 C -0.093 4.093 7 C 0.126 3.874 8 N -0.711 5.711 9 C 0.558 3.442 10 O -0.573 6.573 11 C -0.135 4.135 12 C -0.026 4.026 13 C -0.080 4.080 14 C -0.084 4.084 15 O -0.562 6.562 16 Si 0.965 3.035 17 H -0.249 1.249 18 H -0.264 1.264 19 H -0.247 1.247 20 C -0.077 4.077 21 C -0.099 4.099 22 Br -0.029 7.029 23 C -0.046 4.046 24 C -0.405 4.405 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.413 0.587 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.402 0.598 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.079 0.921 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 0.257 3.234 3.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.233 2.767 3 C -0.568 4.568 4 C -0.493 4.493 5 C -0.152 4.152 6 C -0.112 4.112 7 C 0.003 3.997 8 N -0.363 5.363 9 C 0.345 3.655 10 O -0.453 6.453 11 C -0.140 4.140 12 C -0.045 4.045 13 C -0.081 4.081 14 C -0.194 4.194 15 O -0.371 6.371 16 Si 0.788 3.212 17 H -0.173 1.173 18 H -0.189 1.189 19 H -0.170 1.170 20 C -0.097 4.097 21 C -0.178 4.178 22 Br 0.057 6.943 23 C -0.067 4.067 24 C -0.490 4.490 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.251 0.749 39 H 0.156 0.844 40 H 0.121 0.879 41 H 0.253 0.747 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.098 0.902 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.500 0.037 3.754 4.043 hybrid contribution 0.579 -0.087 -0.566 0.814 sum -0.920 -0.050 3.189 3.319 Atomic orbital electron populations 1.26188 1.21082 1.04639 1.04444 0.79420 0.65811 0.65410 0.66099 1.26248 1.06636 1.19530 1.04374 1.26609 1.05289 1.06779 1.10659 1.21799 0.99632 0.99715 0.94089 1.21891 0.98419 0.96438 0.94424 1.21578 0.99980 0.81130 0.97009 1.45939 1.44612 1.13895 1.31838 1.18317 0.79337 0.84580 0.83231 1.90791 1.46969 1.80562 1.27021 1.19923 1.01496 0.94647 0.97885 1.21281 0.94382 0.91169 0.97708 1.19449 0.98523 0.94874 0.95232 1.24800 0.99268 1.05293 0.90036 1.86457 1.59463 1.66145 1.25065 0.85470 0.80790 0.75949 0.79029 1.17322 1.18860 1.17026 1.21342 0.93735 0.99325 0.95261 1.21680 1.01786 0.96988 0.97396 1.96831 1.70983 1.94098 1.32402 1.21439 0.96815 0.95318 0.93099 1.26938 1.06904 1.03974 1.11142 0.91155 0.91338 0.90923 0.91367 0.91325 0.91242 0.90033 0.90455 0.91515 0.92281 0.88905 0.92085 0.92102 0.74900 0.84444 0.87906 0.74712 0.83943 0.81967 0.90229 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.38 8.65 113.37 0.98 3.36 16 2 Si 1.04 -7.65 13.36 68.60 0.92 -6.74 16 3 C -0.46 1.86 8.65 113.37 0.98 2.84 16 4 C -0.41 2.33 5.85 72.72 0.43 2.76 16 5 C -0.11 0.53 5.16 31.52 0.16 0.70 16 6 C -0.09 0.41 2.19 -9.59 -0.02 0.39 16 7 C 0.13 0.08 5.05 86.38 0.44 0.51 16 8 N -0.71 -0.24 5.32 -465.98 -2.48 -2.72 16 9 C 0.56 3.82 7.77 86.79 0.67 4.50 16 10 O -0.57 -8.70 16.35 -3.88 -0.06 -8.77 16 11 C -0.14 -0.55 5.87 -20.09 -0.12 -0.66 16 12 C -0.03 -0.14 9.15 22.53 0.21 0.07 16 13 C -0.08 -0.21 5.42 -19.91 -0.11 -0.32 16 14 C -0.08 0.13 2.81 71.24 0.20 0.33 16 15 O -0.56 0.06 12.74 -148.98 -1.90 -1.84 16 16 Si 0.96 -2.32 25.06 68.60 1.72 -0.60 16 17 H -0.25 0.46 7.11 99.48 0.71 1.17 16 18 H -0.26 -0.27 7.11 99.48 0.71 0.44 16 19 H -0.25 0.72 7.11 99.48 0.71 1.42 16 20 C -0.08 -0.14 8.41 22.34 0.19 0.05 16 21 C -0.10 -0.11 6.22 22.27 0.14 0.03 16 22 Br -0.03 0.00 33.69 -20.37 -0.69 -0.69 16 23 C -0.05 0.01 9.28 22.55 0.21 0.22 16 24 C -0.40 1.98 5.29 72.99 0.39 2.36 16 25 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 31 H 0.08 -0.51 8.04 -2.38 -0.02 -0.53 16 32 H 0.08 -0.38 8.04 -2.38 -0.02 -0.40 16 33 H 0.07 -0.39 7.55 -2.38 -0.02 -0.41 16 34 H 0.06 -0.17 8.04 -2.39 -0.02 -0.19 16 35 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 36 H 0.06 0.19 8.07 -2.39 -0.02 0.17 16 37 H 0.06 0.20 8.14 -2.38 -0.02 0.18 16 38 H 0.41 -2.27 5.87 -92.71 -0.54 -2.82 16 39 H 0.14 0.98 7.65 -2.91 -0.02 0.96 16 40 H 0.10 -0.58 7.96 -2.39 -0.02 -0.60 16 41 H 0.40 -3.75 8.74 -74.06 -0.65 -4.40 16 42 H 0.14 -0.04 4.86 -2.91 -0.01 -0.06 16 43 H 0.16 -1.00 6.41 -2.91 -0.02 -1.02 16 44 H 0.08 -0.30 8.03 -2.39 -0.02 -0.32 16 45 H 0.08 -0.43 8.06 -2.39 -0.02 -0.45 16 Total: 0.00 -16.43 384.99 2.82 -13.61 By element: Atomic # 1 Polarization: -9.95 SS G_CDS: 0.57 Total: -9.38 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 4.74 Total: 17.13 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -2.48 Total: -2.72 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.96 Total: -10.61 kcal Atomic # 14 Polarization: -9.98 SS G_CDS: 2.64 Total: -7.34 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal Total: -16.43 2.82 -13.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.519 kcal (2) G-P(sol) polarization free energy of solvation -16.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds