Wall clock time and date at job start Sun Mar 7 2021 09:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86294 * 111.24533 * 2 1 4 4 C 1.89333 * 111.45920 * 125.07055 * 2 1 3 5 5 C 1.55151 * 101.35083 * 120.84848 * 4 2 1 6 6 C 1.53574 * 111.29005 * 331.41785 * 5 4 2 7 7 C 1.52993 * 109.46913 * 169.05945 * 6 5 4 8 8 N 1.46506 * 109.47563 * 66.45366 * 7 6 5 9 9 C 1.34777 * 120.00271 * 180.02562 * 8 7 6 10 10 O 1.21695 * 119.99807 * 359.97438 * 9 8 7 11 11 C 1.46426 * 119.99838 * 179.97438 * 9 8 7 12 12 C 1.34807 * 119.99550 * 180.02562 * 11 9 8 13 13 C 1.47216 * 119.99577 * 179.97438 * 12 11 9 14 14 C 1.39833 * 120.17175 * 359.71869 * 13 12 11 15 15 C 1.37884 * 119.82677 * 179.78599 * 14 13 12 16 16 C 1.38406 * 120.17028 * 0.47433 * 15 14 13 17 17 C 1.50697 * 119.82526 * 179.76118 * 16 15 14 18 18 O 1.42900 * 109.47165 * 245.01590 * 17 16 15 19 19 Si 1.86297 * 109.47466 * 5.01876 * 17 16 15 20 20 H 1.48501 * 109.47196 * 60.00189 * 19 17 16 21 21 H 1.48506 * 109.47065 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47150 * 300.00077 * 19 17 16 23 23 C 1.38400 * 120.34299 * 359.77743 * 16 15 14 24 24 C 1.37889 * 120.17428 * 359.97438 * 23 16 15 25 25 C 1.55912 * 109.50675 * 49.03254 * 6 5 4 26 26 H 1.08995 * 109.46881 * 294.93264 * 1 2 3 27 27 H 1.08998 * 109.46654 * 54.92959 * 1 2 3 28 28 H 1.08999 * 109.47273 * 174.92863 * 1 2 3 29 29 H 1.08998 * 109.47237 * 185.06464 * 3 2 1 30 30 H 1.09000 * 109.47093 * 305.07109 * 3 2 1 31 31 H 1.08999 * 109.46883 * 65.06489 * 3 2 1 32 32 H 1.09003 * 111.04881 * 2.83233 * 4 2 1 33 33 H 1.08994 * 111.08227 * 238.88602 * 4 2 1 34 34 H 1.09000 * 109.12740 * 210.92961 * 5 4 2 35 35 H 1.09004 * 109.12003 * 91.89565 * 5 4 2 36 36 H 1.08999 * 109.46395 * 289.05506 * 6 5 4 37 37 H 1.08996 * 109.47340 * 306.44665 * 7 6 5 38 38 H 1.09000 * 109.46925 * 186.44973 * 7 6 5 39 39 H 0.96999 * 119.99685 * 359.97438 * 8 7 6 40 40 H 1.07999 * 120.00125 * 359.97438 * 11 9 8 41 41 H 1.07995 * 120.00297 * 0.27249 * 12 11 9 42 42 H 1.08006 * 120.08398 * 0.03049 * 14 13 12 43 43 H 1.08002 * 119.91792 * 180.21201 * 15 14 13 44 44 H 1.09011 * 109.47183 * 125.02160 * 17 16 15 45 45 H 0.96701 * 113.99486 * 60.00407 * 18 17 16 46 46 H 1.08006 * 119.91142 * 179.97438 * 23 16 15 47 47 H 1.07996 * 120.09069 * 179.97438 * 24 23 16 48 48 H 1.09001 * 111.42722 * 76.91394 * 25 6 5 49 49 H 1.09002 * 111.42037 * 201.84911 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5381 1.7363 0.0000 4 6 2.5557 -1.0125 1.4422 5 6 3.3933 -2.0806 0.6908 6 6 2.8147 -2.3637 -0.7033 7 6 3.8085 -3.2048 -1.5067 8 7 3.9328 -4.5304 -0.8954 9 6 4.7595 -5.4472 -1.4362 10 8 5.4025 -5.1740 -2.4327 11 6 4.8840 -6.7719 -0.8248 12 6 5.7114 -7.6886 -1.3655 13 6 5.8370 -9.0203 -0.7505 14 6 5.1043 -9.3359 0.3979 15 6 5.2240 -10.5868 0.9655 16 6 6.0742 -11.5255 0.4072 17 6 6.2031 -12.8885 1.0371 18 8 7.5314 -13.0591 1.5355 19 14 4.9885 -13.0411 2.4414 20 1 3.6081 -12.8639 1.9235 21 1 5.1161 -14.3840 3.0625 22 1 5.2736 -11.9970 3.4581 23 6 6.8066 -11.2189 -0.7263 24 6 6.6939 -9.9740 -1.3086 25 6 2.5568 -1.0159 -1.4434 26 1 -0.3633 0.4332 0.9319 27 1 -0.3632 0.5905 -0.8411 28 1 -0.3634 -1.0236 -0.0908 29 1 3.6238 1.7041 -0.0907 30 1 2.1194 2.2889 -0.8411 31 1 2.2659 2.2319 0.9319 32 1 1.7533 -1.4765 2.0157 33 1 3.1882 -0.3990 2.0837 34 1 3.3971 -3.0039 1.2702 35 1 4.4176 -1.7226 0.5864 36 1 1.8757 -2.9080 -0.6031 37 1 4.7814 -2.7134 -1.5097 38 1 3.4512 -3.3093 -2.5312 39 1 3.4206 -4.7480 -0.1009 40 1 4.3137 -7.0141 0.0598 41 1 6.2856 -7.4446 -2.2470 42 1 4.4433 -8.6032 0.8369 43 1 4.6562 -10.8333 1.8506 44 1 5.9939 -13.6550 0.2908 45 1 7.7866 -12.4100 2.2053 46 1 7.4682 -11.9566 -1.1560 47 1 7.2664 -9.7360 -2.1928 48 1 3.4839 -0.5865 -1.8233 49 1 1.8202 -1.1329 -2.2384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:57:56 Heat of formation + Delta-G solvation = -84.568492 kcal Electronic energy + Delta-G solvation = -24843.063270 eV Core-core repulsion = 21278.770812 eV Total energy + Delta-G solvation = -3564.292458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89149 -40.43347 -38.02760 -37.72302 -35.05784 -34.57796 -32.29647 -31.42580 -30.49621 -29.28950 -28.56376 -27.76530 -26.44737 -24.34270 -24.10092 -23.47676 -21.91291 -21.08633 -20.23067 -18.88774 -18.06593 -17.45225 -16.94049 -16.66525 -16.44107 -16.23113 -15.84242 -15.71024 -15.29958 -15.09026 -14.82508 -14.67297 -14.46808 -14.38145 -14.02369 -13.98158 -13.90590 -13.73308 -13.60365 -13.38396 -13.32994 -13.25510 -13.02692 -12.68315 -12.33937 -12.30784 -12.23801 -12.08650 -11.97269 -11.62236 -11.53596 -11.33717 -10.97418 -10.94217 -10.52436 -10.48368 -10.44105 -10.05380 -10.00985 -9.27961 -0.56417 0.31620 0.90813 1.08114 1.36277 1.45231 1.53086 1.79590 1.82474 1.85027 2.27035 2.33681 2.48566 2.77786 3.38031 3.52648 3.59808 3.71820 3.77463 3.81573 3.92103 4.00425 4.11693 4.19879 4.25384 4.38854 4.43515 4.45825 4.50903 4.53188 4.63417 4.65603 4.67668 4.68519 4.73402 4.77192 4.90072 4.90581 4.98555 5.04516 5.07072 5.10953 5.19050 5.32680 5.33288 5.36916 5.41288 5.42521 5.46350 5.52344 5.57053 5.82753 6.47094 6.55671 7.30511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.968 3.032 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.111 4.111 6 C -0.098 4.098 7 C 0.127 3.873 8 N -0.727 5.727 9 C 0.545 3.455 10 O -0.544 6.544 11 C -0.214 4.214 12 C -0.017 4.017 13 C -0.072 4.072 14 C -0.096 4.096 15 C -0.128 4.128 16 C -0.109 4.109 17 C -0.083 4.083 18 O -0.537 6.537 19 Si 0.950 3.050 20 H -0.250 1.250 21 H -0.253 1.253 22 H -0.252 1.252 23 C -0.092 4.092 24 C -0.092 4.092 25 C -0.391 4.391 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.401 0.599 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.377 0.623 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.083 0.917 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 0.971 3.298 4.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.149 4.149 6 C -0.116 4.116 7 C 0.003 3.997 8 N -0.378 5.378 9 C 0.334 3.666 10 O -0.423 6.423 11 C -0.234 4.234 12 C -0.037 4.037 13 C -0.072 4.072 14 C -0.113 4.113 15 C -0.145 4.145 16 C -0.109 4.109 17 C -0.194 4.194 18 O -0.342 6.342 19 Si 0.772 3.228 20 H -0.173 1.173 21 H -0.177 1.177 22 H -0.175 1.175 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.477 4.477 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.235 0.765 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.224 0.776 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.101 0.899 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.143 0.653 2.845 4.290 hybrid contribution 0.023 0.335 0.414 0.533 sum -3.120 0.989 3.259 4.618 Atomic orbital electron populations 1.26023 1.19996 1.04533 1.04523 0.80503 0.67500 0.67465 0.67953 1.26021 1.06658 1.17977 1.04472 1.26503 1.05158 1.06680 1.10181 1.21772 0.99835 0.99162 0.94141 1.21878 0.98609 0.96501 0.94659 1.21487 0.99681 0.81546 0.96937 1.45971 1.45733 1.14269 1.31867 1.18334 0.79361 0.85000 0.83870 1.90836 1.45449 1.80424 1.25638 1.22914 1.03805 0.93893 1.02818 1.22410 0.93817 0.90323 0.97126 1.19077 0.98352 0.93779 0.96000 1.21332 0.98583 0.96451 0.94979 1.20998 0.99312 0.93915 1.00314 1.20490 0.97447 0.96247 0.96722 1.25029 0.92524 0.96024 1.05813 1.86534 1.29429 1.57401 1.60840 0.85675 0.78153 0.81234 0.77695 1.17339 1.17699 1.17547 1.20998 0.98485 0.96688 0.94780 1.21479 0.97133 0.92869 0.99553 1.26763 1.06786 1.03891 1.10280 0.91123 0.91144 0.91125 0.91034 0.91141 0.91186 0.90580 0.90341 0.92079 0.91653 0.90288 0.91257 0.91243 0.76485 0.85291 0.84424 0.85170 0.85866 0.86263 0.77595 0.84968 0.84983 0.89852 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.99 8.65 101.05 0.87 1.86 16 2 Si 0.97 -3.25 13.36 -169.99 -2.27 -5.52 16 3 C -0.44 0.87 8.65 101.05 0.87 1.75 16 4 C -0.40 0.94 5.85 38.30 0.22 1.17 16 5 C -0.11 0.22 5.17 -25.30 -0.13 0.08 16 6 C -0.10 0.19 2.19 -88.77 -0.19 -0.01 16 7 C 0.13 0.03 5.05 -4.04 -0.02 0.01 16 8 N -0.73 0.02 5.36 -61.70 -0.33 -0.31 16 9 C 0.55 1.43 7.74 -12.96 -0.10 1.33 16 10 O -0.54 -3.69 16.23 5.19 0.08 -3.61 16 11 C -0.21 -0.06 9.41 -37.50 -0.35 -0.41 16 12 C -0.02 -0.01 9.46 -37.15 -0.35 -0.37 16 13 C -0.07 -0.03 5.87 -105.06 -0.62 -0.64 16 14 C -0.10 0.04 9.41 -39.11 -0.37 -0.33 16 15 C -0.13 0.05 8.65 -39.65 -0.34 -0.29 16 16 C -0.11 0.02 5.36 -104.50 -0.56 -0.54 16 17 C -0.08 0.08 2.80 36.00 0.10 0.18 16 18 O -0.54 0.07 12.83 -35.23 -0.45 -0.38 16 19 Si 0.95 -1.08 25.12 -169.99 -4.27 -5.35 16 20 H -0.25 0.14 7.11 56.52 0.40 0.54 16 21 H -0.25 -0.12 7.11 56.52 0.40 0.29 16 22 H -0.25 0.28 7.03 56.52 0.40 0.67 16 23 C -0.09 0.00 9.66 -39.65 -0.38 -0.38 16 24 C -0.09 -0.01 9.80 -39.11 -0.38 -0.39 16 25 C -0.39 0.86 5.29 38.71 0.20 1.07 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.08 -0.18 8.04 -51.93 -0.42 -0.60 16 33 H 0.08 -0.16 8.04 -51.93 -0.42 -0.58 16 34 H 0.06 -0.14 7.55 -51.93 -0.39 -0.53 16 35 H 0.06 -0.08 8.04 -51.93 -0.42 -0.50 16 36 H 0.08 -0.20 8.13 -51.93 -0.42 -0.63 16 37 H 0.07 0.09 8.07 -51.93 -0.42 -0.32 16 38 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.40 -1.10 7.82 -40.82 -0.32 -1.42 16 40 H 0.13 -0.32 6.07 -52.49 -0.32 -0.64 16 41 H 0.14 0.20 7.52 -52.49 -0.39 -0.20 16 42 H 0.13 -0.33 6.17 -52.48 -0.32 -0.65 16 43 H 0.12 -0.21 4.84 -52.49 -0.25 -0.47 16 44 H 0.12 -0.21 7.96 -51.92 -0.41 -0.62 16 45 H 0.38 -1.23 8.70 45.56 0.40 -0.83 16 46 H 0.13 -0.11 8.06 -52.48 -0.42 -0.54 16 47 H 0.13 -0.18 8.06 -52.49 -0.42 -0.61 16 48 H 0.08 -0.15 8.03 -51.93 -0.42 -0.57 16 49 H 0.08 -0.18 8.06 -51.93 -0.42 -0.60 16 LS Contribution 398.23 15.07 6.00 6.00 Total: 0.00 -7.25 398.23 -10.26 -17.51 By element: Atomic # 1 Polarization: -4.94 SS G_CDS: -7.50 Total: -12.44 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.53 Total: 4.09 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -0.33 Total: -0.31 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.37 Total: -3.99 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: -6.54 Total: -10.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -7.25 -10.26 -17.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.057 kcal (2) G-P(sol) polarization free energy of solvation -7.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds