Wall clock time and date at job start Sun Mar 7 2021 09:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86302 * 111.29064 * 2 1 4 4 C 1.89767 * 111.47088 * 234.85344 * 2 1 3 5 5 C 1.55912 * 99.33417 * 221.63263 * 4 2 1 6 6 C 1.53571 * 109.51099 * 40.64231 * 5 4 2 7 7 C 1.52995 * 109.12623 * 190.48250 * 6 5 4 8 8 N 1.46500 * 109.46898 * 296.79904 * 7 6 5 9 9 C 1.34779 * 120.00146 * 180.02562 * 8 7 6 10 10 O 1.21569 * 119.99682 * 0.02562 * 9 8 7 11 11 C 1.47695 * 120.00274 * 180.02562 * 9 8 7 12 12 C 1.39620 * 120.15584 * 359.97438 * 11 9 8 13 13 C 1.38103 * 119.85361 * 179.97438 * 12 11 9 14 14 F 1.35099 * 119.91981 * 180.02562 * 13 12 11 15 15 C 1.38612 * 120.16303 * 0.02562 * 13 12 11 16 16 C 1.50703 * 119.84067 * 180.02562 * 15 13 12 17 17 O 1.42898 * 109.47002 * 284.99853 * 16 15 13 18 18 Si 1.86303 * 109.47096 * 164.99747 * 16 15 13 19 19 H 1.48501 * 109.47101 * 60.00235 * 18 16 15 20 20 H 1.48503 * 109.46837 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47298 * 299.99948 * 18 16 15 22 22 C 1.38226 * 120.32043 * 0.02562 * 15 13 12 23 23 C 1.38274 * 120.13986 * 359.70260 * 22 15 13 24 24 F 1.35105 * 120.08392 * 180.27392 * 23 22 15 25 25 C 1.55150 * 111.28712 * 310.96502 * 6 5 4 26 26 H 1.09001 * 109.47651 * 294.89802 * 1 2 3 27 27 H 1.09006 * 109.47443 * 54.90082 * 1 2 3 28 28 H 1.09004 * 109.47134 * 174.89451 * 1 2 3 29 29 H 1.08998 * 109.46955 * 185.10483 * 3 2 1 30 30 H 1.09005 * 109.46971 * 305.10070 * 3 2 1 31 31 H 1.08998 * 109.47177 * 65.10329 * 3 2 1 32 32 H 1.09001 * 111.40998 * 104.10465 * 4 2 1 33 33 H 1.09005 * 111.49319 * 339.18572 * 4 2 1 34 34 H 1.09003 * 109.47476 * 280.61131 * 5 4 2 35 35 H 1.09000 * 109.47314 * 160.66863 * 5 4 2 36 36 H 1.09003 * 109.12104 * 71.44202 * 6 5 4 37 37 H 1.08994 * 109.47416 * 56.79851 * 7 6 5 38 38 H 1.08998 * 109.47289 * 176.80327 * 7 6 5 39 39 H 0.97002 * 120.00483 * 0.02562 * 8 7 6 40 40 H 1.08001 * 120.06758 * 359.96161 * 12 11 9 41 41 H 1.09007 * 109.47315 * 45.00074 * 16 15 13 42 42 H 0.96694 * 113.99820 * 299.99869 * 17 16 15 43 43 H 1.07998 * 119.93124 * 179.97438 * 22 15 13 44 44 H 1.09002 * 111.04873 * 146.60417 * 25 6 5 45 45 H 1.09000 * 111.04697 * 270.52848 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5394 1.7359 0.0000 4 6 2.5575 -1.0166 -1.4440 5 6 3.7202 -1.7455 -0.7039 6 6 3.2469 -2.1816 0.6905 7 6 4.4530 -2.6562 1.5035 8 7 5.0406 -3.8352 0.8624 9 6 6.1210 -4.4298 1.4061 10 8 6.6076 -3.9881 2.4289 11 6 6.7138 -5.6181 0.7595 12 6 6.1572 -6.1284 -0.4149 13 6 6.7169 -7.2395 -1.0145 14 9 6.1798 -7.7342 -2.1512 15 6 7.8283 -7.8484 -0.4530 16 6 8.4335 -9.0601 -1.1138 17 8 7.6051 -10.1989 -0.8706 18 14 10.1321 -9.3666 -0.4126 19 1 10.0289 -9.6003 1.0503 20 1 10.7281 -10.5610 -1.0633 21 1 10.9928 -8.1833 -0.6653 22 6 8.3843 -7.3496 0.7100 23 6 7.8378 -6.2345 1.3182 24 9 8.3855 -5.7446 2.4519 25 6 2.5556 -1.0133 1.4416 26 1 -0.3634 0.4326 0.9321 27 1 -0.3634 0.5909 -0.8408 28 1 -0.3634 -1.0236 -0.0915 29 1 3.6250 1.7027 -0.0914 30 1 2.1207 2.2890 -0.8408 31 1 2.2682 2.2315 0.9321 32 1 2.9333 -0.3729 -2.2393 33 1 1.8214 -1.7250 -1.8242 34 1 4.5686 -1.0685 -0.6045 35 1 4.0217 -2.6229 -1.2761 36 1 2.5417 -3.0063 0.5865 37 1 5.1958 -1.8600 1.5502 38 1 4.1322 -2.9136 2.5129 39 1 4.6522 -4.1879 0.0465 40 1 5.2909 -5.6554 -0.8532 41 1 8.5093 -8.8886 -2.1876 42 1 7.4931 -10.4108 0.0662 43 1 9.2500 -7.8292 1.1423 44 1 1.7542 -1.3800 2.0831 45 1 3.2792 -0.4340 2.0152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:58:04 Heat of formation + Delta-G solvation = -179.761210 kcal Electronic energy + Delta-G solvation = -27655.346995 eV Core-core repulsion = 23431.782479 eV Total energy + Delta-G solvation = -4223.564516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08444 -49.98391 -41.31071 -39.97436 -38.04986 -37.65247 -34.87510 -33.31295 -31.40941 -30.63341 -29.29931 -28.57608 -28.24538 -26.64442 -24.52163 -24.24596 -23.51200 -21.77874 -21.02190 -19.67497 -18.83805 -18.63088 -17.95226 -17.36098 -17.03777 -16.87724 -16.58659 -16.44789 -16.34902 -15.98446 -15.76384 -15.62701 -15.36592 -14.95997 -14.79417 -14.71824 -14.31869 -14.01481 -14.00752 -13.82157 -13.77968 -13.58448 -13.46080 -13.31523 -13.26065 -12.99647 -12.70362 -12.41958 -12.40187 -12.31467 -12.00471 -11.97048 -11.60317 -11.16113 -10.96100 -10.69818 -10.63929 -10.56997 -10.46981 -10.15772 -9.81505 -0.82837 -0.36153 0.89706 1.24863 1.36077 1.44812 1.50191 1.75602 1.77415 1.81003 1.92755 2.28188 2.45599 2.76210 2.81381 3.03633 3.15926 3.39562 3.48321 3.66745 3.68877 3.86819 3.94537 4.06603 4.25928 4.30728 4.39331 4.40524 4.46215 4.49432 4.61449 4.62787 4.65311 4.65700 4.66381 4.68708 4.69864 4.82271 4.92429 5.01672 5.14309 5.21984 5.33249 5.34259 5.37145 5.42860 5.45623 6.29577 6.32002 7.04176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.968 3.032 3 C -0.443 4.443 4 C -0.397 4.397 5 C -0.116 4.116 6 C -0.094 4.094 7 C 0.125 3.875 8 N -0.723 5.723 9 C 0.557 3.443 10 O -0.515 6.515 11 C -0.140 4.140 12 C -0.094 4.094 13 C 0.114 3.886 14 F -0.119 7.119 15 C -0.101 4.101 16 C -0.085 4.085 17 O -0.528 6.528 18 Si 0.948 3.052 19 H -0.246 1.246 20 H -0.244 1.244 21 H -0.243 1.243 22 C -0.144 4.144 23 C 0.160 3.840 24 F -0.105 7.105 25 C -0.393 4.393 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.151 0.849 41 H 0.127 0.873 42 H 0.379 0.621 43 H 0.154 0.846 44 H 0.082 0.918 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 0.427 -2.541 3.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.551 4.551 4 C -0.483 4.483 5 C -0.154 4.154 6 C -0.113 4.113 7 C 0.002 3.998 8 N -0.376 5.376 9 C 0.343 3.657 10 O -0.390 6.390 11 C -0.144 4.144 12 C -0.114 4.114 13 C 0.094 3.906 14 F -0.098 7.098 15 C -0.103 4.103 16 C -0.195 4.195 17 O -0.333 6.333 18 Si 0.769 3.231 19 H -0.170 1.170 20 H -0.167 1.167 21 H -0.166 1.166 22 C -0.163 4.163 23 C 0.139 3.861 24 F -0.083 7.083 25 C -0.479 4.479 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.236 0.764 40 H 0.169 0.831 41 H 0.145 0.855 42 H 0.226 0.774 43 H 0.172 0.828 44 H 0.101 0.899 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.064 0.660 -2.091 2.437 hybrid contribution -0.611 -0.118 -0.020 0.622 sum -1.674 0.542 -2.111 2.748 Atomic orbital electron populations 1.26029 1.20030 1.04576 1.04511 0.80515 0.67343 0.67681 0.67900 1.26025 1.06656 1.17906 1.04551 1.26668 1.03626 1.08122 1.09915 1.21990 0.98576 1.00632 0.94182 1.21699 0.96110 0.99047 0.94466 1.21634 0.94870 0.86615 0.96686 1.45977 1.30682 1.31465 1.29496 1.17827 0.80662 0.82811 0.84416 1.90894 1.60943 1.64073 1.23133 1.19910 0.97887 0.99066 0.97556 1.21191 1.00470 0.95311 0.94402 1.17177 0.94020 0.94214 0.85172 1.91587 1.84732 1.86701 1.46736 1.20462 0.95605 0.98725 0.95478 1.25082 1.05006 0.83543 1.05892 1.86602 1.71150 1.44792 1.30768 0.85685 0.74612 0.82500 0.80287 1.17009 1.16726 1.16616 1.21041 1.02416 0.96693 0.96152 1.17483 0.91865 0.92750 0.84017 1.91656 1.83750 1.86461 1.46400 1.26601 1.05440 1.05240 1.10625 0.91155 0.91143 0.91070 0.91060 0.91153 0.91073 0.90309 0.90324 0.91347 0.91886 0.90338 0.90894 0.90901 0.76432 0.83105 0.85533 0.77397 0.82842 0.89934 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.05 8.65 101.05 0.87 1.92 16 2 Si 0.97 -3.51 13.37 -169.99 -2.27 -5.78 16 3 C -0.44 0.96 8.65 101.05 0.87 1.83 16 4 C -0.40 1.11 5.95 38.71 0.23 1.34 16 5 C -0.12 0.30 4.96 -24.88 -0.12 0.18 16 6 C -0.09 0.23 2.41 -89.19 -0.21 0.02 16 7 C 0.12 -0.06 4.93 -4.04 -0.02 -0.08 16 8 N -0.72 0.42 5.28 -61.30 -0.32 0.10 16 9 C 0.56 1.38 7.77 -12.40 -0.10 1.29 16 10 O -0.51 -3.38 15.34 5.30 0.08 -3.30 16 11 C -0.14 -0.13 5.88 -104.92 -0.62 -0.74 16 12 C -0.09 0.12 9.52 -39.12 -0.37 -0.25 16 13 C 0.11 -0.04 7.23 -39.49 -0.29 -0.33 16 14 F -0.12 -0.10 16.73 2.25 0.04 -0.06 16 15 C -0.10 0.08 5.27 -104.49 -0.55 -0.47 16 16 C -0.09 0.13 2.44 36.01 0.09 0.22 16 17 O -0.53 0.40 12.88 -35.23 -0.45 -0.05 16 18 Si 0.95 -1.85 25.48 -169.99 -4.33 -6.18 16 19 H -0.25 0.53 6.72 56.52 0.38 0.91 16 20 H -0.24 0.13 7.11 56.52 0.40 0.53 16 21 H -0.24 0.31 7.11 56.52 0.40 0.71 16 22 C -0.14 0.07 8.62 -39.57 -0.34 -0.27 16 23 C 0.16 0.26 7.28 -38.97 -0.28 -0.02 16 24 F -0.10 -0.44 15.55 2.25 0.04 -0.40 16 25 C -0.39 1.06 5.27 38.30 0.20 1.26 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.08 -0.20 8.06 -51.93 -0.42 -0.62 16 33 H 0.08 -0.22 8.06 -51.93 -0.42 -0.64 16 34 H 0.07 -0.15 8.09 -51.93 -0.42 -0.57 16 35 H 0.06 -0.19 7.35 -51.93 -0.38 -0.57 16 36 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 37 H 0.07 0.03 8.13 -51.93 -0.42 -0.40 16 38 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.40 -1.30 5.65 -40.82 -0.23 -1.53 16 40 H 0.15 -0.61 6.40 -52.49 -0.34 -0.95 16 41 H 0.13 -0.26 7.89 -51.93 -0.41 -0.67 16 42 H 0.38 -1.62 8.70 45.56 0.40 -1.22 16 43 H 0.15 -0.30 4.86 -52.49 -0.25 -0.56 16 44 H 0.08 -0.23 8.04 -51.93 -0.42 -0.65 16 45 H 0.08 -0.20 7.84 -51.93 -0.41 -0.60 16 LS Contribution 373.52 15.07 5.63 5.63 Total: 0.00 -7.29 373.52 -8.10 -15.39 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: -5.86 Total: -11.23 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -0.64 Total: 5.90 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -0.32 Total: 0.10 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.37 Total: -3.35 kcal Atomic # 9 Polarization: -0.53 SS G_CDS: 0.07 Total: -0.46 kcal Atomic # 14 Polarization: -5.36 SS G_CDS: -6.60 Total: -11.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -7.29 -8.10 -15.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.374 kcal (2) G-P(sol) polarization free energy of solvation -7.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds