Wall clock time and date at job start Sun Mar 7 2021 09:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86302 * 111.29064 * 2 1 4 4 C 1.89767 * 111.47088 * 234.85344 * 2 1 3 5 5 C 1.55912 * 99.33417 * 221.63263 * 4 2 1 6 6 C 1.53571 * 109.51099 * 40.64231 * 5 4 2 7 7 C 1.52995 * 109.12623 * 190.48250 * 6 5 4 8 8 N 1.46500 * 109.46898 * 296.79904 * 7 6 5 9 9 C 1.34779 * 120.00146 * 180.02562 * 8 7 6 10 10 O 1.21569 * 119.99682 * 0.02562 * 9 8 7 11 11 C 1.47695 * 120.00274 * 180.02562 * 9 8 7 12 12 C 1.39620 * 120.15584 * 359.97438 * 11 9 8 13 13 C 1.38103 * 119.85361 * 179.97438 * 12 11 9 14 14 F 1.35099 * 119.91981 * 180.02562 * 13 12 11 15 15 C 1.38612 * 120.16303 * 0.02562 * 13 12 11 16 16 C 1.50703 * 119.84067 * 180.02562 * 15 13 12 17 17 O 1.42898 * 109.47002 * 284.99853 * 16 15 13 18 18 Si 1.86303 * 109.47096 * 164.99747 * 16 15 13 19 19 H 1.48501 * 109.47101 * 60.00235 * 18 16 15 20 20 H 1.48503 * 109.46837 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47298 * 299.99948 * 18 16 15 22 22 C 1.38226 * 120.32043 * 0.02562 * 15 13 12 23 23 C 1.38274 * 120.13986 * 359.70260 * 22 15 13 24 24 F 1.35105 * 120.08392 * 180.27392 * 23 22 15 25 25 C 1.55150 * 111.28712 * 310.96502 * 6 5 4 26 26 H 1.09001 * 109.47651 * 294.89802 * 1 2 3 27 27 H 1.09006 * 109.47443 * 54.90082 * 1 2 3 28 28 H 1.09004 * 109.47134 * 174.89451 * 1 2 3 29 29 H 1.08998 * 109.46955 * 185.10483 * 3 2 1 30 30 H 1.09005 * 109.46971 * 305.10070 * 3 2 1 31 31 H 1.08998 * 109.47177 * 65.10329 * 3 2 1 32 32 H 1.09001 * 111.40998 * 104.10465 * 4 2 1 33 33 H 1.09005 * 111.49319 * 339.18572 * 4 2 1 34 34 H 1.09003 * 109.47476 * 280.61131 * 5 4 2 35 35 H 1.09000 * 109.47314 * 160.66863 * 5 4 2 36 36 H 1.09003 * 109.12104 * 71.44202 * 6 5 4 37 37 H 1.08994 * 109.47416 * 56.79851 * 7 6 5 38 38 H 1.08998 * 109.47289 * 176.80327 * 7 6 5 39 39 H 0.97002 * 120.00483 * 0.02562 * 8 7 6 40 40 H 1.08001 * 120.06758 * 359.96161 * 12 11 9 41 41 H 1.09007 * 109.47315 * 45.00074 * 16 15 13 42 42 H 0.96694 * 113.99820 * 299.99869 * 17 16 15 43 43 H 1.07998 * 119.93124 * 179.97438 * 22 15 13 44 44 H 1.09002 * 111.04873 * 146.60417 * 25 6 5 45 45 H 1.09000 * 111.04697 * 270.52848 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5394 1.7359 0.0000 4 6 2.5575 -1.0166 -1.4440 5 6 3.7202 -1.7455 -0.7039 6 6 3.2469 -2.1816 0.6905 7 6 4.4530 -2.6562 1.5035 8 7 5.0406 -3.8352 0.8624 9 6 6.1210 -4.4298 1.4061 10 8 6.6076 -3.9881 2.4289 11 6 6.7138 -5.6181 0.7595 12 6 6.1572 -6.1284 -0.4149 13 6 6.7169 -7.2395 -1.0145 14 9 6.1798 -7.7342 -2.1512 15 6 7.8283 -7.8484 -0.4530 16 6 8.4335 -9.0601 -1.1138 17 8 7.6051 -10.1989 -0.8706 18 14 10.1321 -9.3666 -0.4126 19 1 10.0289 -9.6003 1.0503 20 1 10.7281 -10.5610 -1.0633 21 1 10.9928 -8.1833 -0.6653 22 6 8.3843 -7.3496 0.7100 23 6 7.8378 -6.2345 1.3182 24 9 8.3855 -5.7446 2.4519 25 6 2.5556 -1.0133 1.4416 26 1 -0.3634 0.4326 0.9321 27 1 -0.3634 0.5909 -0.8408 28 1 -0.3634 -1.0236 -0.0915 29 1 3.6250 1.7027 -0.0914 30 1 2.1207 2.2890 -0.8408 31 1 2.2682 2.2315 0.9321 32 1 2.9333 -0.3729 -2.2393 33 1 1.8214 -1.7250 -1.8242 34 1 4.5686 -1.0685 -0.6045 35 1 4.0217 -2.6229 -1.2761 36 1 2.5417 -3.0063 0.5865 37 1 5.1958 -1.8600 1.5502 38 1 4.1322 -2.9136 2.5129 39 1 4.6522 -4.1879 0.0465 40 1 5.2909 -5.6554 -0.8532 41 1 8.5093 -8.8886 -2.1876 42 1 7.4931 -10.4108 0.0662 43 1 9.2500 -7.8292 1.1423 44 1 1.7542 -1.3800 2.0831 45 1 3.2792 -0.4340 2.0152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:58:03 Heat of formation + Delta-G solvation = -174.315474 kcal Electronic energy + Delta-G solvation = -27655.110850 eV Core-core repulsion = 23431.782479 eV Total energy + Delta-G solvation = -4223.328371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.15467 -50.09534 -41.40211 -39.99414 -37.98018 -37.61616 -34.91916 -33.27350 -31.40813 -30.46814 -29.10193 -28.38076 -28.19378 -26.56014 -24.47631 -24.09189 -23.51264 -21.86316 -20.87162 -19.66653 -18.83698 -18.67092 -17.96035 -17.39731 -17.09295 -16.85454 -16.64441 -16.42124 -16.37162 -15.91432 -15.74489 -15.63555 -15.28902 -14.92320 -14.70478 -14.64136 -14.32373 -13.84978 -13.82782 -13.81128 -13.68371 -13.40886 -13.30943 -13.21696 -13.15266 -13.01543 -12.51228 -12.35582 -12.22207 -12.20590 -11.86080 -11.85212 -11.41617 -11.33357 -10.75662 -10.64696 -10.57652 -10.39674 -10.30003 -10.15759 -9.84617 -0.84119 -0.34902 1.03786 1.35019 1.41552 1.51062 1.73419 1.88418 1.91712 2.02714 2.05578 2.21230 2.66412 2.75838 2.82827 3.08872 3.26315 3.49285 3.53891 3.76850 3.80130 4.02276 4.08838 4.16924 4.28835 4.38824 4.51422 4.52682 4.61505 4.65480 4.65588 4.70853 4.79570 4.81306 4.82908 4.83176 4.86533 4.88678 5.13257 5.21017 5.23026 5.35511 5.37223 5.52474 5.57481 5.62558 5.65017 6.28625 6.60668 6.96171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.037 2.963 3 C -0.462 4.462 4 C -0.404 4.404 5 C -0.120 4.120 6 C -0.088 4.088 7 C 0.124 3.876 8 N -0.706 5.706 9 C 0.554 3.446 10 O -0.565 6.565 11 C -0.148 4.148 12 C -0.077 4.077 13 C 0.109 3.891 14 F -0.124 7.124 15 C -0.095 4.095 16 C -0.084 4.084 17 O -0.543 6.543 18 Si 0.978 3.022 19 H -0.241 1.241 20 H -0.265 1.265 21 H -0.252 1.252 22 C -0.138 4.138 23 C 0.138 3.862 24 F -0.126 7.126 25 C -0.407 4.407 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.415 0.585 40 H 0.181 0.819 41 H 0.132 0.868 42 H 0.393 0.607 43 H 0.167 0.833 44 H 0.085 0.915 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -0.155 -3.735 4.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.230 2.770 3 C -0.568 4.568 4 C -0.490 4.490 5 C -0.157 4.157 6 C -0.107 4.107 7 C 0.001 3.999 8 N -0.359 5.359 9 C 0.340 3.660 10 O -0.444 6.444 11 C -0.152 4.152 12 C -0.097 4.097 13 C 0.089 3.911 14 F -0.102 7.102 15 C -0.096 4.096 16 C -0.194 4.194 17 O -0.350 6.350 18 Si 0.800 3.200 19 H -0.165 1.165 20 H -0.189 1.189 21 H -0.176 1.176 22 C -0.157 4.157 23 C 0.117 3.883 24 F -0.104 7.104 25 C -0.492 4.492 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.198 0.802 41 H 0.150 0.850 42 H 0.242 0.758 43 H 0.184 0.816 44 H 0.103 0.897 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.973 0.081 -3.301 3.847 hybrid contribution -0.357 0.058 0.322 0.484 sum -2.330 0.140 -2.979 3.785 Atomic orbital electron populations 1.26204 1.21291 1.04641 1.04321 0.79450 0.65535 0.65612 0.66370 1.26262 1.06615 1.19606 1.04354 1.26746 1.03638 1.08411 1.10173 1.22023 0.98601 1.01040 0.94077 1.21688 0.95256 0.99472 0.94235 1.21661 0.95371 0.86221 0.96671 1.45896 1.29561 1.30887 1.29556 1.18114 0.80884 0.83053 0.83902 1.90865 1.62578 1.65615 1.25390 1.19837 0.98123 0.98887 0.98387 1.21359 1.00640 0.94590 0.93074 1.17282 0.94216 0.94503 0.85102 1.91581 1.84828 1.86801 1.47008 1.20568 0.95312 0.98709 0.95048 1.25137 1.04953 0.83028 1.06267 1.86569 1.71252 1.44869 1.32355 0.85260 0.73696 0.80922 0.80120 1.16493 1.18908 1.17608 1.21105 1.02598 0.95954 0.96015 1.17817 0.92704 0.93819 0.83953 1.91599 1.84195 1.86929 1.47667 1.26772 1.05515 1.05524 1.11347 0.91424 0.91294 0.90878 0.91441 0.91248 0.91387 0.90371 0.89775 0.91882 0.90970 0.89128 0.92041 0.92151 0.74666 0.80228 0.85004 0.75753 0.81611 0.89655 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.42 8.65 113.37 0.98 3.40 16 2 Si 1.04 -8.02 13.37 68.60 0.92 -7.10 16 3 C -0.46 1.89 8.65 113.37 0.98 2.87 16 4 C -0.40 2.72 5.95 72.99 0.43 3.16 16 5 C -0.12 0.72 4.96 31.79 0.16 0.88 16 6 C -0.09 0.47 2.41 -9.87 -0.02 0.45 16 7 C 0.12 -0.05 4.93 86.38 0.43 0.38 16 8 N -0.71 0.81 5.28 -466.13 -2.46 -1.65 16 9 C 0.55 3.29 7.77 86.74 0.67 3.96 16 10 O -0.56 -8.68 15.34 -3.93 -0.06 -8.74 16 11 C -0.15 -0.32 5.88 -20.06 -0.12 -0.43 16 12 C -0.08 0.28 9.52 22.57 0.21 0.49 16 13 C 0.11 -0.19 7.23 22.33 0.16 -0.03 16 14 F -0.12 -0.04 16.73 44.97 0.75 0.71 16 15 C -0.09 0.21 5.27 -19.78 -0.10 0.11 16 16 C -0.08 0.32 2.44 71.24 0.17 0.49 16 17 O -0.54 1.27 12.88 -148.98 -1.92 -0.65 16 18 Si 0.98 -4.12 25.48 68.60 1.75 -2.37 16 19 H -0.24 1.22 6.72 99.48 0.67 1.89 16 20 H -0.26 0.20 7.11 99.48 0.71 0.91 16 21 H -0.25 0.67 7.11 99.48 0.71 1.38 16 22 C -0.14 0.13 8.62 22.28 0.19 0.32 16 23 C 0.14 0.58 7.28 22.67 0.17 0.75 16 24 F -0.13 -1.30 15.55 44.97 0.70 -0.60 16 25 C -0.41 2.23 5.27 72.72 0.38 2.62 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 28 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 29 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 31 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 32 H 0.08 -0.48 8.06 -2.39 -0.02 -0.50 16 33 H 0.08 -0.62 8.06 -2.38 -0.02 -0.64 16 34 H 0.06 -0.29 8.09 -2.39 -0.02 -0.31 16 35 H 0.07 -0.56 7.35 -2.39 -0.02 -0.58 16 36 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.06 0.13 8.13 -2.39 -0.02 0.12 16 38 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.41 -3.21 5.65 -92.71 -0.52 -3.73 16 40 H 0.18 -1.85 6.40 -2.91 -0.02 -1.87 16 41 H 0.13 -0.65 7.89 -2.38 -0.02 -0.67 16 42 H 0.39 -3.69 8.70 -74.06 -0.64 -4.33 16 43 H 0.17 -0.68 4.86 -2.91 -0.01 -0.69 16 44 H 0.08 -0.50 8.04 -2.39 -0.02 -0.52 16 45 H 0.08 -0.32 7.84 -2.39 -0.02 -0.34 16 Total: 0.00 -18.26 373.52 4.95 -13.30 By element: Atomic # 1 Polarization: -12.90 SS G_CDS: 0.58 Total: -12.33 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 4.70 Total: 19.42 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -2.46 Total: -1.65 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.98 Total: -9.39 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 1.45 Total: 0.11 kcal Atomic # 14 Polarization: -12.14 SS G_CDS: 2.67 Total: -9.47 kcal Total: -18.26 4.95 -13.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.011 kcal (2) G-P(sol) polarization free energy of solvation -18.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds