Wall clock time and date at job start Sun Mar 7 2021 10:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86305 * 111.24305 * 2 1 4 4 C 1.89339 * 111.45905 * 125.06535 * 2 1 3 5 5 C 1.55148 * 101.34727 * 120.85331 * 4 2 1 6 6 C 1.53572 * 111.29220 * 331.41565 * 5 4 2 7 7 C 1.52997 * 109.47744 * 169.06398 * 6 5 4 8 8 N 1.46503 * 109.47352 * 66.44702 * 7 6 5 9 9 C 1.34771 * 119.99794 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00708 * 0.02562 * 9 8 7 11 11 C 1.47726 * 119.99713 * 180.02562 * 9 8 7 12 12 C 1.39633 * 120.11806 * 359.97438 * 11 9 8 13 13 C 1.37867 * 119.88004 * 179.97438 * 12 11 9 14 14 C 1.38630 * 120.11686 * 0.02562 * 13 12 11 15 15 F 1.35098 * 119.87978 * 179.97438 * 14 13 12 16 16 C 1.38681 * 120.23910 * 359.97438 * 14 13 12 17 17 C 1.50701 * 119.93837 * 179.97438 * 16 14 13 18 18 O 1.42895 * 109.47079 * 195.00416 * 17 16 14 19 19 Si 1.86301 * 109.47149 * 314.99911 * 17 16 14 20 20 H 1.48506 * 109.47302 * 59.99966 * 19 17 16 21 21 H 1.48503 * 109.47334 * 300.00099 * 19 17 16 22 22 H 1.48500 * 109.47376 * 180.02562 * 19 17 16 23 23 C 1.37809 * 120.12043 * 0.25658 * 16 14 13 24 24 C 1.55915 * 109.50708 * 49.03470 * 6 5 4 25 25 H 1.09008 * 109.47058 * 294.93386 * 1 2 3 26 26 H 1.09000 * 109.47244 * 54.93320 * 1 2 3 27 27 H 1.08997 * 109.47463 * 174.93805 * 1 2 3 28 28 H 1.08999 * 109.46860 * 185.06715 * 3 2 1 29 29 H 1.09001 * 109.46742 * 305.06722 * 3 2 1 30 30 H 1.09004 * 109.46933 * 65.06679 * 3 2 1 31 31 H 1.09003 * 111.04830 * 2.83896 * 4 2 1 32 32 H 1.09000 * 111.08343 * 238.88624 * 4 2 1 33 33 H 1.09000 * 109.12371 * 210.93175 * 5 4 2 34 34 H 1.09002 * 109.12766 * 91.89643 * 5 4 2 35 35 H 1.09008 * 109.47115 * 289.05901 * 6 5 4 36 36 H 1.09006 * 109.46709 * 306.45242 * 7 6 5 37 37 H 1.08998 * 109.47463 * 186.45474 * 7 6 5 38 38 H 0.96998 * 119.99431 * 0.02562 * 8 7 6 39 39 H 1.07997 * 120.06054 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.93938 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47380 * 74.99813 * 17 16 14 42 42 H 0.96696 * 114.00435 * 59.99627 * 18 17 16 43 43 H 1.08004 * 120.06040 * 179.72186 * 23 16 14 44 44 H 1.09002 * 111.42577 * 76.91440 * 24 6 5 45 45 H 1.08998 * 111.42363 * 201.85314 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7365 0.0000 4 6 2.5556 -1.0124 1.4423 5 6 3.3933 -2.0805 0.6910 6 6 2.8148 -2.3637 -0.7031 7 6 3.8085 -3.2049 -1.5066 8 7 3.9329 -4.5304 -0.8951 9 6 4.7595 -5.4471 -1.4360 10 8 5.4024 -5.1741 -2.4310 11 6 4.8845 -6.7839 -0.8198 12 6 4.1477 -7.1000 0.3234 13 6 4.2677 -8.3492 0.8942 14 6 5.1183 -9.2905 0.3355 15 9 5.2326 -10.5130 0.8990 16 6 5.8524 -8.9817 -0.7999 17 6 6.7755 -10.0099 -1.4013 18 8 7.6637 -9.3724 -2.3214 19 14 7.7634 -10.8247 -0.0481 20 1 6.8405 -11.4872 0.9083 21 1 8.5641 -9.7986 0.6669 22 1 8.6735 -11.8375 -0.6407 23 6 5.7436 -7.7345 -1.3757 24 6 2.5568 -1.0159 -1.4433 25 1 -0.3634 0.4333 0.9320 26 1 -0.3634 0.5904 -0.8411 27 1 -0.3634 -1.0236 -0.0907 28 1 3.6237 1.7042 -0.0908 29 1 2.1193 2.2890 -0.8411 30 1 2.2658 2.2321 0.9319 31 1 1.7532 -1.4765 2.0158 32 1 3.1882 -0.3989 2.0839 33 1 3.3971 -3.0038 1.2704 34 1 4.4176 -1.7225 0.5865 35 1 1.8757 -2.9081 -0.6030 36 1 4.7815 -2.7134 -1.5095 37 1 3.4512 -3.3093 -2.5310 38 1 3.4202 -4.7481 -0.1010 39 1 3.4850 -6.3673 0.7597 40 1 3.6985 -8.5946 1.7787 41 1 6.1879 -10.7632 -1.9260 42 1 8.2192 -8.6888 -1.9225 43 1 6.3192 -7.4935 -2.2573 44 1 3.4838 -0.5865 -1.8232 45 1 1.8202 -1.1329 -2.2382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:00:26 Heat of formation + Delta-G solvation = -132.982942 kcal Electronic energy + Delta-G solvation = -25061.322323 eV Core-core repulsion = 21309.240241 eV Total energy + Delta-G solvation = -3752.082082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.37967 -41.37093 -39.78311 -37.95559 -37.65417 -34.80839 -32.80850 -32.04280 -30.52557 -29.30636 -28.58119 -27.54989 -26.83312 -24.69173 -23.94236 -23.29281 -21.46092 -20.90530 -19.34422 -18.80551 -18.10601 -17.76561 -17.16510 -16.92407 -16.50727 -16.17157 -15.83955 -15.79027 -15.46433 -15.19679 -14.95022 -14.78151 -14.46465 -14.26823 -14.06405 -14.00881 -13.96292 -13.86663 -13.61428 -13.47972 -13.37186 -13.20221 -12.80420 -12.71328 -12.41736 -12.36022 -12.01301 -11.99881 -11.57565 -11.33439 -11.08924 -10.96613 -10.92840 -10.56309 -10.48119 -10.18201 -10.04604 -9.72325 -0.52034 -0.04635 1.09560 1.45392 1.50223 1.52219 1.66316 1.76950 1.80060 1.95462 2.08670 2.45458 2.59683 2.94948 3.17970 3.31960 3.53676 3.59878 3.71952 3.83689 3.89305 3.96354 4.07552 4.39040 4.39162 4.41002 4.46984 4.53194 4.61640 4.63649 4.65700 4.66669 4.69522 4.72681 4.79922 4.85588 4.94002 4.99942 5.03535 5.04975 5.15473 5.27096 5.33573 5.37429 5.43573 5.44692 5.55631 6.40778 6.41499 7.15514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.968 3.032 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.112 4.112 6 C -0.098 4.098 7 C 0.127 3.873 8 N -0.726 5.726 9 C 0.559 3.441 10 O -0.530 6.530 11 C -0.142 4.142 12 C -0.061 4.061 13 C -0.152 4.152 14 C 0.116 3.884 15 F -0.121 7.121 16 C -0.157 4.157 17 C -0.078 4.078 18 O -0.534 6.534 19 Si 0.940 3.060 20 H -0.228 1.228 21 H -0.252 1.252 22 H -0.252 1.252 23 C -0.021 4.021 24 C -0.391 4.391 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.399 0.601 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.379 0.621 43 H 0.157 0.843 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 2.465 3.919 5.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.552 4.552 4 C -0.485 4.485 5 C -0.149 4.149 6 C -0.117 4.117 7 C 0.004 3.996 8 N -0.379 5.379 9 C 0.346 3.654 10 O -0.407 6.407 11 C -0.145 4.145 12 C -0.079 4.079 13 C -0.170 4.170 14 C 0.096 3.904 15 F -0.099 7.099 16 C -0.159 4.159 17 C -0.188 4.188 18 O -0.339 6.339 19 Si 0.760 3.240 20 H -0.150 1.150 21 H -0.175 1.175 22 H -0.176 1.176 23 C -0.039 4.039 24 C -0.477 4.477 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.145 0.855 42 H 0.227 0.773 43 H 0.174 0.826 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.524 1.870 3.451 4.667 hybrid contribution -0.386 0.180 0.581 0.721 sum -2.911 2.050 4.032 5.379 Atomic orbital electron populations 1.26027 1.19984 1.04546 1.04548 0.80508 0.67517 0.67493 0.67922 1.26026 1.06664 1.17981 1.04491 1.26502 1.05162 1.06668 1.10192 1.21778 0.99915 0.99154 0.94103 1.21892 0.98586 0.96554 0.94681 1.21537 0.99890 0.81164 0.97034 1.45995 1.45639 1.14329 1.31932 1.18117 0.79551 0.84041 0.83731 1.90822 1.44986 1.79813 1.25074 1.20017 1.01344 0.95148 0.97973 1.21179 0.96996 0.95999 0.93771 1.21102 1.00296 0.93331 1.02310 1.17779 0.98281 0.81374 0.92977 1.91600 1.93907 1.40282 1.84157 1.20406 1.01460 0.97777 0.96215 1.24950 0.94590 0.97320 1.01951 1.86529 1.53925 1.56580 1.36843 0.86059 0.79125 0.81574 0.77278 1.15027 1.17536 1.17574 1.20987 0.94804 0.89846 0.98291 1.26760 1.06843 1.03793 1.10303 0.91112 0.91129 0.91118 0.91024 0.91129 0.91178 0.90548 0.90300 0.92148 0.91570 0.90242 0.91016 0.90996 0.76515 0.84530 0.83538 0.85484 0.77339 0.82589 0.89789 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.14 8.65 101.05 0.87 2.01 16 2 Si 0.97 -3.64 13.36 -169.99 -2.27 -5.92 16 3 C -0.44 1.01 8.65 101.05 0.87 1.89 16 4 C -0.40 1.15 5.85 38.29 0.22 1.38 16 5 C -0.11 0.29 5.17 -25.30 -0.13 0.16 16 6 C -0.10 0.25 2.19 -88.77 -0.19 0.06 16 7 C 0.13 -0.07 5.05 -4.04 -0.02 -0.09 16 8 N -0.73 0.57 5.32 -61.29 -0.33 0.24 16 9 C 0.56 1.15 7.77 -12.39 -0.10 1.06 16 10 O -0.53 -3.15 16.34 5.31 0.09 -3.07 16 11 C -0.14 -0.08 5.87 -104.96 -0.62 -0.69 16 12 C -0.06 0.11 9.54 -39.20 -0.37 -0.26 16 13 C -0.15 0.21 10.01 -39.57 -0.40 -0.19 16 14 C 0.12 0.03 6.67 -39.27 -0.26 -0.23 16 15 F -0.12 -0.13 12.82 2.25 0.03 -0.10 16 16 C -0.16 -0.07 5.13 -104.61 -0.54 -0.61 16 17 C -0.08 0.00 2.97 36.01 0.11 0.11 16 18 O -0.53 -0.26 11.64 -35.23 -0.41 -0.67 16 19 Si 0.94 0.13 26.09 -169.99 -4.43 -4.31 16 20 H -0.23 -0.19 5.29 56.52 0.30 0.11 16 21 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 22 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 23 C -0.02 -0.02 8.78 -39.20 -0.34 -0.37 16 24 C -0.39 1.08 5.29 38.72 0.20 1.29 16 25 H 0.07 -0.17 7.96 -51.92 -0.41 -0.58 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 27 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.22 8.04 -51.93 -0.42 -0.64 16 32 H 0.08 -0.20 8.04 -51.93 -0.42 -0.62 16 33 H 0.06 -0.19 7.55 -51.93 -0.39 -0.58 16 34 H 0.07 -0.13 8.04 -51.93 -0.42 -0.55 16 35 H 0.08 -0.26 8.14 -51.92 -0.42 -0.68 16 36 H 0.07 0.03 8.07 -51.93 -0.42 -0.39 16 37 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.40 -1.39 5.87 -40.82 -0.24 -1.63 16 39 H 0.14 -0.66 6.40 -52.49 -0.34 -1.00 16 40 H 0.15 -0.50 8.06 -52.49 -0.42 -0.92 16 41 H 0.13 -0.10 7.96 -51.93 -0.41 -0.51 16 42 H 0.38 -1.01 8.42 45.56 0.38 -0.63 16 43 H 0.16 0.24 6.65 -52.48 -0.35 -0.11 16 44 H 0.08 -0.20 8.03 -51.93 -0.42 -0.62 16 45 H 0.08 -0.23 8.06 -51.93 -0.42 -0.65 16 LS Contribution 365.88 15.07 5.51 5.51 Total: 0.00 -6.76 365.88 -9.00 -15.76 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -6.50 Total: -12.97 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.69 Total: 5.51 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -0.33 Total: 0.24 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.32 Total: -3.74 kcal Atomic # 9 Polarization: -0.13 SS G_CDS: 0.03 Total: -0.10 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: -6.71 Total: -10.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -6.76 -9.00 -15.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.220 kcal (2) G-P(sol) polarization free energy of solvation -6.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds