Wall clock time and date at job start Sun Mar 7 2021 10:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86305 * 111.24305 * 2 1 4 4 C 1.89339 * 111.45905 * 125.06535 * 2 1 3 5 5 C 1.55148 * 101.34727 * 120.85331 * 4 2 1 6 6 C 1.53572 * 111.29220 * 331.41565 * 5 4 2 7 7 C 1.52997 * 109.47744 * 169.06398 * 6 5 4 8 8 N 1.46503 * 109.47352 * 66.44702 * 7 6 5 9 9 C 1.34771 * 119.99794 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00708 * 0.02562 * 9 8 7 11 11 C 1.47726 * 119.99713 * 180.02562 * 9 8 7 12 12 C 1.39633 * 120.11806 * 359.97438 * 11 9 8 13 13 C 1.37867 * 119.88004 * 179.97438 * 12 11 9 14 14 C 1.38630 * 120.11686 * 0.02562 * 13 12 11 15 15 F 1.35098 * 119.87978 * 179.97438 * 14 13 12 16 16 C 1.38681 * 120.23910 * 359.97438 * 14 13 12 17 17 C 1.50701 * 119.93837 * 179.97438 * 16 14 13 18 18 O 1.42895 * 109.47079 * 195.00416 * 17 16 14 19 19 Si 1.86301 * 109.47149 * 314.99911 * 17 16 14 20 20 H 1.48506 * 109.47302 * 59.99966 * 19 17 16 21 21 H 1.48503 * 109.47334 * 300.00099 * 19 17 16 22 22 H 1.48500 * 109.47376 * 180.02562 * 19 17 16 23 23 C 1.37809 * 120.12043 * 0.25658 * 16 14 13 24 24 C 1.55915 * 109.50708 * 49.03470 * 6 5 4 25 25 H 1.09008 * 109.47058 * 294.93386 * 1 2 3 26 26 H 1.09000 * 109.47244 * 54.93320 * 1 2 3 27 27 H 1.08997 * 109.47463 * 174.93805 * 1 2 3 28 28 H 1.08999 * 109.46860 * 185.06715 * 3 2 1 29 29 H 1.09001 * 109.46742 * 305.06722 * 3 2 1 30 30 H 1.09004 * 109.46933 * 65.06679 * 3 2 1 31 31 H 1.09003 * 111.04830 * 2.83896 * 4 2 1 32 32 H 1.09000 * 111.08343 * 238.88624 * 4 2 1 33 33 H 1.09000 * 109.12371 * 210.93175 * 5 4 2 34 34 H 1.09002 * 109.12766 * 91.89643 * 5 4 2 35 35 H 1.09008 * 109.47115 * 289.05901 * 6 5 4 36 36 H 1.09006 * 109.46709 * 306.45242 * 7 6 5 37 37 H 1.08998 * 109.47463 * 186.45474 * 7 6 5 38 38 H 0.96998 * 119.99431 * 0.02562 * 8 7 6 39 39 H 1.07997 * 120.06054 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.93938 * 179.97438 * 13 12 11 41 41 H 1.09001 * 109.47380 * 74.99813 * 17 16 14 42 42 H 0.96696 * 114.00435 * 59.99627 * 18 17 16 43 43 H 1.08004 * 120.06040 * 179.72186 * 23 16 14 44 44 H 1.09002 * 111.42577 * 76.91440 * 24 6 5 45 45 H 1.08998 * 111.42363 * 201.85314 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7365 0.0000 4 6 2.5556 -1.0124 1.4423 5 6 3.3933 -2.0805 0.6910 6 6 2.8148 -2.3637 -0.7031 7 6 3.8085 -3.2049 -1.5066 8 7 3.9329 -4.5304 -0.8951 9 6 4.7595 -5.4471 -1.4360 10 8 5.4024 -5.1741 -2.4310 11 6 4.8845 -6.7839 -0.8198 12 6 4.1477 -7.1000 0.3234 13 6 4.2677 -8.3492 0.8942 14 6 5.1183 -9.2905 0.3355 15 9 5.2326 -10.5130 0.8990 16 6 5.8524 -8.9817 -0.7999 17 6 6.7755 -10.0099 -1.4013 18 8 7.6637 -9.3724 -2.3214 19 14 7.7634 -10.8247 -0.0481 20 1 6.8405 -11.4872 0.9083 21 1 8.5641 -9.7986 0.6669 22 1 8.6735 -11.8375 -0.6407 23 6 5.7436 -7.7345 -1.3757 24 6 2.5568 -1.0159 -1.4433 25 1 -0.3634 0.4333 0.9320 26 1 -0.3634 0.5904 -0.8411 27 1 -0.3634 -1.0236 -0.0907 28 1 3.6237 1.7042 -0.0908 29 1 2.1193 2.2890 -0.8411 30 1 2.2658 2.2321 0.9319 31 1 1.7532 -1.4765 2.0158 32 1 3.1882 -0.3989 2.0839 33 1 3.3971 -3.0038 1.2704 34 1 4.4176 -1.7225 0.5865 35 1 1.8757 -2.9081 -0.6030 36 1 4.7815 -2.7134 -1.5095 37 1 3.4512 -3.3093 -2.5310 38 1 3.4202 -4.7481 -0.1010 39 1 3.4850 -6.3673 0.7597 40 1 3.6985 -8.5946 1.7787 41 1 6.1879 -10.7632 -1.9260 42 1 8.2192 -8.6888 -1.9225 43 1 6.3192 -7.4935 -2.2573 44 1 3.4838 -0.5865 -1.8232 45 1 1.8202 -1.1329 -2.2382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_12496548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:00:26 Heat of formation + Delta-G solvation = -126.891546 kcal Electronic energy + Delta-G solvation = -25061.058180 eV Core-core repulsion = 21309.240241 eV Total energy + Delta-G solvation = -3751.817940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.39674 -41.42752 -39.80803 -37.89399 -37.66823 -34.82472 -32.76882 -32.01710 -30.34733 -29.08953 -28.36136 -27.50242 -26.77931 -24.61687 -23.82822 -23.24982 -21.50950 -20.74628 -19.31755 -18.81191 -18.11079 -17.78913 -17.17153 -16.93667 -16.53046 -16.17973 -15.80885 -15.75351 -15.39739 -15.14521 -14.93836 -14.64751 -14.41478 -14.26606 -13.99133 -13.83924 -13.79404 -13.72309 -13.41801 -13.38020 -13.20731 -13.10627 -12.80136 -12.51260 -12.43440 -12.17335 -12.03161 -11.84608 -11.40443 -11.35922 -11.21929 -10.93106 -10.74213 -10.37349 -10.31608 -10.18023 -10.02431 -9.70380 -0.52022 0.00724 1.08563 1.41025 1.47465 1.59860 1.76581 1.89428 2.02235 2.06779 2.09796 2.58035 2.67672 2.98749 3.24659 3.35526 3.60295 3.67903 3.84923 3.97551 4.05008 4.12194 4.12864 4.44422 4.54903 4.56829 4.64335 4.67423 4.79240 4.80501 4.82427 4.84151 4.85631 4.87839 4.88465 4.91135 5.01138 5.08955 5.15747 5.26268 5.30626 5.39577 5.54333 5.58294 5.60581 5.63328 5.66643 6.43194 6.53926 7.10026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.039 2.961 3 C -0.463 4.463 4 C -0.407 4.407 5 C -0.114 4.114 6 C -0.092 4.092 7 C 0.126 3.874 8 N -0.710 5.710 9 C 0.555 3.445 10 O -0.579 6.579 11 C -0.152 4.152 12 C -0.047 4.047 13 C -0.146 4.146 14 C 0.104 3.896 15 F -0.127 7.127 16 C -0.162 4.162 17 C -0.078 4.078 18 O -0.548 6.548 19 Si 0.973 3.027 20 H -0.234 1.234 21 H -0.260 1.260 22 H -0.272 1.272 23 C -0.033 4.033 24 C -0.406 4.406 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.415 0.585 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.132 0.868 42 H 0.390 0.610 43 H 0.143 0.857 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 2.556 5.493 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.232 2.768 3 C -0.569 4.569 4 C -0.492 4.492 5 C -0.152 4.152 6 C -0.111 4.111 7 C 0.003 3.997 8 N -0.362 5.362 9 C 0.343 3.657 10 O -0.460 6.460 11 C -0.156 4.156 12 C -0.066 4.066 13 C -0.164 4.164 14 C 0.084 3.916 15 F -0.106 7.106 16 C -0.163 4.163 17 C -0.188 4.188 18 O -0.355 6.355 19 Si 0.795 3.205 20 H -0.157 1.157 21 H -0.184 1.184 22 H -0.197 1.197 23 C -0.052 4.052 24 C -0.491 4.491 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.253 0.747 39 H 0.189 0.811 40 H 0.191 0.809 41 H 0.150 0.850 42 H 0.240 0.760 43 H 0.160 0.840 44 H 0.096 0.904 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.045 1.982 5.057 6.772 hybrid contribution 0.081 0.191 0.092 0.227 sum -3.964 2.173 5.148 6.851 Atomic orbital electron populations 1.26188 1.21061 1.04680 1.04404 0.79423 0.65810 0.65326 0.66229 1.26273 1.06611 1.19730 1.04323 1.26586 1.05311 1.06772 1.10542 1.21796 0.99509 0.99812 0.94063 1.21884 0.98476 0.96310 0.94400 1.21541 0.99823 0.81392 0.96950 1.45897 1.44674 1.13730 1.31948 1.18417 0.79213 0.84833 0.83196 1.90795 1.47112 1.80757 1.27326 1.20002 1.02216 0.94281 0.99061 1.21497 0.96212 0.96527 0.92325 1.21426 0.99515 0.92766 1.02720 1.18000 0.98860 0.81587 0.93104 1.91583 1.94019 1.40747 1.84203 1.20384 1.01844 0.97540 0.96573 1.24979 0.94591 0.97389 1.01842 1.86491 1.54325 1.57114 1.37616 0.85606 0.78032 0.80305 0.76543 1.15746 1.18424 1.19739 1.20922 0.95434 0.90459 0.98347 1.26946 1.06806 1.04193 1.11156 0.91158 0.91446 0.90813 0.91433 0.91427 0.91264 0.89859 0.90520 0.91137 0.92451 0.88717 0.92370 0.92359 0.74672 0.81061 0.80913 0.85027 0.76028 0.83965 0.90411 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.79 8.65 113.37 0.98 3.77 16 2 Si 1.04 -8.56 13.36 68.60 0.92 -7.64 16 3 C -0.46 2.07 8.65 113.37 0.98 3.05 16 4 C -0.41 2.89 5.85 72.72 0.43 3.31 16 5 C -0.11 0.72 5.17 31.52 0.16 0.88 16 6 C -0.09 0.54 2.19 -9.59 -0.02 0.52 16 7 C 0.13 -0.09 5.05 86.38 0.44 0.35 16 8 N -0.71 1.37 5.32 -466.09 -2.48 -1.11 16 9 C 0.56 2.69 7.77 86.75 0.67 3.36 16 10 O -0.58 -8.14 16.34 -3.92 -0.06 -8.20 16 11 C -0.15 -0.17 5.87 -20.09 -0.12 -0.29 16 12 C -0.05 0.26 9.54 22.52 0.21 0.47 16 13 C -0.15 0.68 10.01 22.28 0.22 0.91 16 14 C 0.10 0.00 6.67 22.47 0.15 0.15 16 15 F -0.13 -0.22 12.82 44.97 0.58 0.36 16 16 C -0.16 -0.23 5.13 -19.86 -0.10 -0.34 16 17 C -0.08 -0.07 2.97 71.24 0.21 0.15 16 18 O -0.55 -1.30 11.64 -148.98 -1.73 -3.03 16 19 Si 0.97 1.01 26.09 68.60 1.79 2.80 16 20 H -0.23 -0.47 5.29 99.48 0.53 0.06 16 21 H -0.26 -0.55 7.11 99.48 0.71 0.16 16 22 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 23 C -0.03 -0.10 8.78 22.52 0.20 0.09 16 24 C -0.41 2.31 5.29 72.99 0.39 2.70 16 25 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 26 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 27 H 0.07 -0.48 7.96 -2.39 -0.02 -0.49 16 28 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 29 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 31 H 0.08 -0.66 8.04 -2.39 -0.02 -0.68 16 32 H 0.08 -0.47 8.04 -2.39 -0.02 -0.49 16 33 H 0.07 -0.58 7.55 -2.39 -0.02 -0.60 16 34 H 0.06 -0.24 8.04 -2.39 -0.02 -0.26 16 35 H 0.09 -0.81 8.14 -2.38 -0.02 -0.83 16 36 H 0.06 0.13 8.07 -2.38 -0.02 0.11 16 37 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.41 -3.66 5.87 -92.71 -0.54 -4.21 16 39 H 0.17 -2.25 6.40 -2.91 -0.02 -2.27 16 40 H 0.17 -1.73 8.06 -2.91 -0.02 -1.75 16 41 H 0.13 -0.09 7.96 -2.39 -0.02 -0.11 16 42 H 0.39 -1.45 8.42 -74.06 -0.62 -2.07 16 43 H 0.14 0.79 6.65 -2.91 -0.02 0.77 16 44 H 0.08 -0.33 8.03 -2.39 -0.02 -0.35 16 45 H 0.08 -0.48 8.06 -2.39 -0.02 -0.50 16 Total: 0.00 -17.41 365.88 4.21 -13.20 By element: Atomic # 1 Polarization: -15.86 SS G_CDS: 0.41 Total: -15.46 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 4.80 Total: 19.10 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -2.48 Total: -1.11 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.80 Total: -11.24 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 0.58 Total: 0.36 kcal Atomic # 14 Polarization: -7.55 SS G_CDS: 2.71 Total: -4.84 kcal Total: -17.41 4.21 -13.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12496548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.695 kcal (2) G-P(sol) polarization free energy of solvation -17.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds