Wall clock time and date at job start Sun Mar 7 2021 10:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39281 * 121.03362 * 2 1 4 4 C 1.46497 * 134.19639 * 359.95404 * 3 2 1 5 5 C 1.50704 * 126.60363 * 0.02562 * 4 3 2 6 6 O 1.42896 * 109.46838 * 284.99960 * 5 4 3 7 7 Si 1.86297 * 109.47204 * 165.00127 * 5 4 3 8 8 H 1.48491 * 109.47467 * 59.99807 * 7 5 4 9 9 H 1.48500 * 109.47018 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47260 * 299.99832 * 7 5 4 11 11 C 1.34183 * 106.80072 * 180.02562 * 4 3 2 12 12 N 1.36947 * 109.94977 * 359.97438 * 11 4 3 13 13 C 1.37152 * 110.11381 * 359.97438 * 12 11 4 14 14 N 1.32825 * 132.96171 * 179.97438 * 13 12 11 15 15 C 1.31313 * 121.88655 * 179.75074 * 14 13 12 16 16 C 1.39753 * 121.02801 * 179.97438 * 2 1 3 17 17 C 1.47669 * 120.45519 * 359.97438 * 16 2 1 18 18 O 1.21570 * 119.99745 * 354.20394 * 17 16 2 19 19 N 1.34770 * 119.99534 * 174.19871 * 17 16 2 20 20 C 1.46501 * 119.99843 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47360 * 180.02562 * 20 19 17 22 22 C 1.53577 * 109.47560 * 64.95573 * 21 20 19 23 23 C 1.55141 * 111.29317 * 169.06352 * 22 21 20 24 24 Si 1.89519 * 101.35869 * 331.41923 * 23 22 21 25 25 C 1.86301 * 111.49941 * 245.87297 * 24 23 22 26 26 C 1.86298 * 111.48081 * 120.81764 * 24 23 22 27 27 C 1.55916 * 109.47496 * 185.00037 * 21 20 19 28 28 H 1.09000 * 109.46753 * 263.78996 * 1 2 3 29 29 H 1.08997 * 109.47025 * 23.79116 * 1 2 3 30 30 H 1.08998 * 109.47040 * 143.79326 * 1 2 3 31 31 H 1.09002 * 109.46767 * 45.00161 * 5 4 3 32 32 H 0.96695 * 114.00721 * 299.99905 * 6 5 4 33 33 H 1.07997 * 125.02384 * 180.02562 * 11 4 3 34 34 H 0.97005 * 124.94278 * 180.02562 * 12 11 4 35 35 H 1.08000 * 119.30827 * 180.28890 * 15 14 13 36 36 H 0.97001 * 120.00750 * 0.02562 * 19 17 16 37 37 H 1.08998 * 109.47034 * 59.99770 * 20 19 17 38 38 H 1.09002 * 109.47186 * 300.00115 * 20 19 17 39 39 H 1.09001 * 109.43104 * 304.97563 * 21 20 19 40 40 H 1.09000 * 109.12149 * 289.54533 * 22 21 20 41 41 H 1.08995 * 109.12113 * 48.57350 * 22 21 20 42 42 H 1.09004 * 111.04863 * 89.42738 * 23 22 21 43 43 H 1.08998 * 111.05251 * 213.35457 * 23 22 21 44 44 H 1.09001 * 109.47276 * 169.73184 * 25 24 23 45 45 H 1.08991 * 109.47228 * 289.73883 * 25 24 23 46 46 H 1.09002 * 109.46989 * 49.73703 * 25 24 23 47 47 H 1.08998 * 109.46866 * 310.27793 * 26 24 23 48 48 H 1.09002 * 109.46646 * 70.26951 * 26 24 23 49 49 H 1.08999 * 109.47305 * 190.27510 * 26 24 23 50 50 H 1.09000 * 111.42681 * 316.88223 * 27 21 20 51 51 H 1.09004 * 111.42790 * 81.76950 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8516 2.6100 -0.0008 5 6 0.4527 3.1705 -0.0015 6 8 -0.1188 3.0233 -1.3029 7 14 0.5071 4.9766 0.4521 8 1 1.3350 5.7110 -0.5379 9 1 -0.8715 5.5287 0.4521 10 1 1.1010 5.1296 1.8046 11 6 2.9948 3.3125 -0.0009 12 7 4.0669 2.4604 0.0004 13 6 3.6348 1.1587 0.0019 14 7 4.2721 -0.0066 0.0031 15 6 3.6266 -1.1502 0.0094 16 6 2.2274 -1.1976 0.0005 17 6 1.5224 -2.4951 0.0017 18 8 0.3119 -2.5290 0.1085 19 7 2.2210 -3.6416 -0.1158 20 6 1.5216 -4.9289 -0.1152 21 6 2.5391 -6.0622 -0.2599 22 6 3.4502 -6.0933 0.9761 23 6 4.3138 -7.3817 1.0072 24 14 3.1996 -8.6005 0.0773 25 6 2.6059 -9.9700 1.1921 26 6 4.0460 -9.2798 -1.4369 27 6 1.7876 -7.4224 -0.3869 28 1 -0.3633 -0.1112 1.0217 29 1 -0.3633 0.9403 -0.4146 30 1 -0.3633 -0.8292 -0.6070 31 1 -0.1550 2.6314 0.7254 32 1 0.3712 3.4782 -2.0015 33 1 3.0599 4.3905 -0.0011 34 1 4.9966 2.7372 0.0009 35 1 4.1869 -2.0735 0.0148 36 1 3.1869 -3.6145 -0.2007 37 1 0.8199 -4.9615 -0.9487 38 1 0.9780 -5.0466 0.8222 39 1 3.1428 -5.8959 -1.1521 40 1 4.1069 -5.2235 0.9576 41 1 2.8344 -6.0543 1.8746 42 1 5.2568 -7.2337 0.4807 43 1 4.4875 -7.7121 2.0312 44 1 1.8312 -10.5432 0.6826 45 1 3.4408 -10.6259 1.4381 46 1 2.1981 -9.5420 2.1078 47 1 4.4600 -8.4581 -2.0212 48 1 4.8497 -9.9509 -1.1335 49 1 3.3237 -9.8280 -2.0418 50 1 0.9633 -7.4897 0.3230 51 1 1.4449 -7.5942 -1.4073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:01:17 Heat of formation + Delta-G solvation = -45.537250 kcal Electronic energy + Delta-G solvation = -29997.068340 eV Core-core repulsion = 26019.852823 eV Total energy + Delta-G solvation = -3977.215518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.86818 -40.99367 -38.86011 -37.92914 -37.64320 -35.18258 -34.61389 -31.97426 -31.39848 -30.16924 -29.08699 -28.91072 -28.35426 -27.04380 -26.22778 -24.58589 -24.15387 -23.59820 -21.80405 -20.81189 -20.57636 -19.31916 -18.79425 -17.81413 -17.55054 -17.06444 -16.75740 -16.52012 -16.23397 -15.81436 -15.71658 -15.50635 -15.33705 -14.82756 -14.66021 -14.46759 -14.39940 -14.07584 -13.81533 -13.79006 -13.77800 -13.68669 -13.56294 -13.41727 -13.26795 -13.20776 -13.12009 -13.05330 -12.49463 -12.36831 -12.14350 -12.11037 -11.82451 -11.72592 -11.34661 -11.17882 -11.15055 -10.73669 -10.60405 -10.32779 -10.26741 -10.18836 -10.09710 -9.63133 -9.13941 -0.35150 -0.10128 1.22518 1.38842 1.51363 1.59968 1.67831 1.77392 1.80577 2.00921 2.03891 2.08088 2.15027 2.68458 2.75257 3.29938 3.47450 3.58276 3.65597 3.70819 3.75867 3.87140 4.07032 4.11065 4.14225 4.27687 4.30456 4.53316 4.57254 4.60464 4.64562 4.68453 4.71047 4.79357 4.82213 4.83764 4.85789 4.86832 4.88064 4.93640 5.00592 5.16031 5.18782 5.27090 5.27475 5.34992 5.39967 5.46542 5.55756 5.59792 5.64391 5.67172 5.72076 6.19436 6.48257 6.80036 6.82939 7.17350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.064 3.936 3 C -0.165 4.165 4 C -0.198 4.198 5 C -0.058 4.058 6 O -0.554 6.554 7 Si 0.992 3.008 8 H -0.229 1.229 9 H -0.277 1.277 10 H -0.256 1.256 11 C 0.080 3.920 12 N -0.561 5.561 13 C 0.288 3.712 14 N -0.516 5.516 15 C 0.180 3.820 16 C -0.242 4.242 17 C 0.566 3.434 18 O -0.568 6.568 19 N -0.714 5.714 20 C 0.129 3.871 21 C -0.092 4.092 22 C -0.115 4.115 23 C -0.408 4.408 24 Si 1.040 2.960 25 C -0.461 4.461 26 C -0.456 4.456 27 C -0.405 4.405 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.388 0.612 33 H 0.217 0.783 34 H 0.438 0.562 35 H 0.192 0.808 36 H 0.411 0.589 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 1.553 -0.705 5.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.056 3.944 3 C -0.172 4.172 4 C -0.205 4.205 5 C -0.168 4.168 6 O -0.361 6.361 7 Si 0.813 3.187 8 H -0.152 1.152 9 H -0.202 1.202 10 H -0.180 1.180 11 C -0.047 4.047 12 N -0.167 5.167 13 C 0.054 3.946 14 N -0.230 5.230 15 C 0.011 3.989 16 C -0.249 4.249 17 C 0.355 3.645 18 O -0.448 6.448 19 N -0.366 5.366 20 C 0.006 3.994 21 C -0.111 4.111 22 C -0.152 4.152 23 C -0.493 4.493 24 Si 1.233 2.767 25 C -0.568 4.568 26 C -0.563 4.563 27 C -0.490 4.490 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.238 0.762 33 H 0.233 0.767 34 H 0.279 0.721 35 H 0.209 0.791 36 H 0.249 0.751 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.097 0.903 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.164 2.155 -0.100 5.597 hybrid contribution 0.188 -0.224 -0.265 0.395 sum 5.353 1.931 -0.366 5.702 Atomic orbital electron populations 1.21118 0.89261 1.04363 1.03137 1.20081 0.97184 0.90043 0.87105 1.19728 0.93182 0.94355 1.09898 1.20848 0.96405 0.90332 1.12936 1.24597 0.90269 1.12943 0.88948 1.86490 1.54391 1.78342 1.16909 0.85151 0.80421 0.72260 0.80900 1.15178 1.20220 1.18035 1.22300 0.84254 0.97158 1.01003 1.41576 1.10539 1.01764 1.62840 1.18772 0.89596 0.86785 0.99431 1.66515 1.40829 0.96443 1.19169 1.22935 0.89717 0.95248 0.90956 1.20534 0.95445 0.93459 1.15465 1.18034 0.86483 0.84083 0.75943 1.90737 1.15101 1.87611 1.51392 1.45889 1.11382 1.05319 1.74045 1.21509 0.95244 0.81100 1.01555 1.21878 0.95715 0.93791 0.99731 1.21793 0.97388 0.98774 0.97259 1.26623 1.06518 1.07808 1.08335 0.79425 0.66000 0.65525 0.65759 1.26246 1.06126 1.13820 1.10577 1.26185 1.07872 1.06778 1.15478 1.26938 1.10602 1.05718 1.05699 0.90611 0.89341 0.90202 0.87405 0.76234 0.76698 0.72107 0.79141 0.75089 0.92315 0.92360 0.88945 0.91413 0.92392 0.90054 0.90546 0.91308 0.91281 0.91402 0.90908 0.91229 0.91298 0.90330 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 8.46 71.24 0.60 -0.55 16 2 C 0.06 0.58 5.98 -19.25 -0.12 0.46 16 3 C -0.16 -1.09 6.16 -20.20 -0.12 -1.21 16 4 C -0.20 -0.18 5.57 -18.63 -0.10 -0.29 16 5 C -0.06 0.05 1.88 71.24 0.13 0.18 16 6 O -0.55 -0.35 11.67 -148.98 -1.74 -2.09 16 7 Si 0.99 -4.36 26.09 68.60 1.79 -2.57 16 8 H -0.23 1.82 7.03 99.48 0.70 2.52 16 9 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 10 H -0.26 0.82 7.11 99.48 0.71 1.53 16 11 C 0.08 -0.33 10.44 82.97 0.87 0.53 16 12 N -0.56 1.09 6.04 -192.26 -1.16 -0.08 16 13 C 0.29 1.52 8.42 134.02 1.13 2.65 16 14 N -0.52 -3.06 10.37 -191.75 -1.99 -5.04 16 15 C 0.18 0.58 10.67 85.20 0.91 1.49 16 16 C -0.24 -1.70 5.89 -19.99 -0.12 -1.82 16 17 C 0.57 4.59 7.72 86.74 0.67 5.26 16 18 O -0.57 -8.57 13.49 -3.94 -0.05 -8.63 16 19 N -0.71 -0.82 5.30 -466.16 -2.47 -3.30 16 20 C 0.13 0.16 5.06 86.38 0.44 0.60 16 21 C -0.09 0.36 2.21 -9.59 -0.02 0.33 16 22 C -0.11 0.47 5.14 31.52 0.16 0.63 16 23 C -0.41 2.13 5.85 72.72 0.43 2.56 16 24 Si 1.04 -7.23 13.37 68.60 0.92 -6.32 16 25 C -0.46 1.67 8.65 113.37 0.98 2.65 16 26 C -0.46 2.22 8.65 113.37 0.98 3.20 16 27 C -0.40 1.76 5.28 72.99 0.39 2.14 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.71 4.79 -2.39 -0.01 0.69 16 30 H 0.08 1.04 5.95 -2.39 -0.01 1.03 16 31 H 0.11 0.05 7.13 -2.39 -0.02 0.03 16 32 H 0.39 -2.57 8.70 -74.06 -0.64 -3.22 16 33 H 0.22 -2.62 6.30 -2.91 -0.02 -2.64 16 34 H 0.44 -3.28 8.96 -92.70 -0.83 -4.11 16 35 H 0.19 -0.90 6.43 -2.91 -0.02 -0.92 16 36 H 0.41 -1.97 5.82 -92.71 -0.54 -2.51 16 37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.06 0.23 8.10 -2.39 -0.02 0.21 16 39 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.07 -0.37 7.46 -2.39 -0.02 -0.39 16 41 H 0.06 -0.13 8.06 -2.39 -0.02 -0.15 16 42 H 0.08 -0.48 8.04 -2.39 -0.02 -0.49 16 43 H 0.08 -0.34 8.04 -2.39 -0.02 -0.36 16 44 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 45 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 46 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 47 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 48 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 49 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 50 H 0.08 -0.25 8.03 -2.39 -0.02 -0.26 16 51 H 0.08 -0.38 8.06 -2.38 -0.02 -0.40 16 Total: 0.00 -21.68 401.67 2.21 -19.47 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: -0.29 Total: -10.28 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 7.20 Total: 18.83 kcal Atomic # 7 Polarization: -2.80 SS G_CDS: -5.62 Total: -8.42 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.79 Total: -10.72 kcal Atomic # 14 Polarization: -11.59 SS G_CDS: 2.71 Total: -8.88 kcal Total: -21.68 2.21 -19.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.068 kcal (2) G-P(sol) polarization free energy of solvation -21.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds