Wall clock time and date at job start Sun Mar 7 2021 10:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89333 * 111.45813 * 125.06702 * 2 1 3 5 5 C 1.55147 * 101.34989 * 114.13512 * 4 2 1 6 6 C 1.53566 * 111.29010 * 28.58791 * 5 4 2 7 7 C 1.52997 * 109.47461 * 190.98498 * 6 5 4 8 8 N 1.46499 * 109.47355 * 293.54438 * 7 6 5 9 9 C 1.34774 * 120.00180 * 179.97438 * 8 7 6 10 10 O 1.21552 * 119.99828 * 0.02562 * 9 8 7 11 11 C 1.47843 * 119.99900 * 179.97438 * 9 8 7 12 12 C 1.39985 * 120.55952 * 180.02562 * 11 9 8 13 13 C 1.38400 * 118.29003 * 179.97438 * 12 11 9 14 14 C 1.50701 * 120.34791 * 180.02562 * 13 12 11 15 15 O 1.42901 * 109.46879 * 65.00331 * 14 13 12 16 16 Si 1.86301 * 109.46818 * 185.00412 * 14 13 12 17 17 H 1.48492 * 109.47245 * 60.00059 * 16 14 13 18 18 H 1.48506 * 109.47018 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46776 * 299.99556 * 16 14 13 20 20 C 1.38309 * 119.30371 * 0.02562 * 13 12 11 21 21 N 1.31954 * 121.08091 * 359.97438 * 20 13 12 22 22 C 1.31668 * 121.88241 * 359.72558 * 21 20 13 23 23 C 1.56066 * 109.55501 * 311.00476 * 6 5 4 24 24 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 26 26 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 28 28 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 30 30 H 1.09002 * 111.04844 * 232.15327 * 4 2 1 31 31 H 1.08999 * 111.05229 * 356.11516 * 4 2 1 32 32 H 1.09003 * 109.12221 * 149.06655 * 5 4 2 33 33 H 1.08996 * 109.12795 * 268.10531 * 5 4 2 34 34 H 1.09006 * 109.47935 * 70.98593 * 6 5 4 35 35 H 1.09007 * 109.47372 * 53.54666 * 7 6 5 36 36 H 1.09000 * 109.47544 * 173.54435 * 7 6 5 37 37 H 0.97001 * 119.99472 * 0.02562 * 8 7 6 38 38 H 1.08008 * 120.85706 * 359.95918 * 12 11 9 39 39 H 1.08999 * 109.46776 * 305.00275 * 14 13 12 40 40 H 0.96692 * 114.00238 * 60.00280 * 15 14 13 41 41 H 1.07997 * 119.46235 * 179.97438 * 20 13 12 42 42 H 1.08002 * 119.72366 * 180.26749 * 22 21 20 43 43 H 1.08996 * 111.41269 * 283.05303 * 23 6 5 44 44 H 1.09006 * 111.49251 * 158.06559 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.2462 -2.1811 0.6911 6 6 3.7193 -1.7454 -0.7034 7 6 4.1406 -2.9773 -1.5071 8 7 5.3306 -3.5752 -0.8966 9 6 5.8833 -4.6788 -1.4377 10 8 5.3947 -5.1779 -2.4326 11 6 7.0845 -5.2819 -0.8219 12 6 7.6685 -6.4278 -1.3745 13 6 8.7922 -6.9526 -0.7602 14 6 9.4586 -8.1846 -1.3162 15 8 9.9924 -7.8947 -2.6097 16 14 10.8371 -8.7117 -0.1793 17 1 10.2824 -9.0129 1.1648 18 1 11.4942 -9.9254 -0.7275 19 1 11.8340 -7.6166 -0.0694 20 6 9.2971 -6.3345 0.3694 21 7 8.7255 -5.2549 0.8683 22 6 7.6588 -4.7149 0.3167 23 6 2.5568 -1.0142 -1.4447 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.1907 2.2612 0.8899 28 1 3.6274 1.7027 -0.0005 29 1 2.1908 2.2612 -0.8900 30 1 3.2797 -0.4330 2.0151 31 1 1.7543 -1.3786 2.0840 32 1 4.1055 -2.5196 1.2701 33 1 2.5407 -3.0054 0.5873 34 1 4.5681 -1.0687 -0.6043 35 1 3.3289 -3.7048 -1.5092 36 1 4.3671 -2.6827 -2.5318 37 1 5.7202 -3.1771 -0.1025 38 1 7.2528 -6.8907 -2.2574 39 1 8.7268 -8.9884 -1.3969 40 1 10.6516 -7.1874 -2.6136 41 1 10.1736 -6.7422 0.8510 42 1 7.2217 -3.8283 0.7519 43 1 1.8198 -1.7216 -1.8246 44 1 2.9328 -0.3696 -2.2393 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:05:09 Heat of formation + Delta-G solvation = -80.996406 kcal Electronic energy + Delta-G solvation = -22742.386025 eV Core-core repulsion = 19396.586313 eV Total energy + Delta-G solvation = -3345.799712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93962 -40.41778 -37.95109 -37.88315 -34.91254 -33.79795 -33.07755 -30.41438 -29.09522 -28.36635 -27.47420 -27.24805 -25.16193 -23.91517 -23.82664 -21.66584 -20.77320 -19.25218 -18.26366 -18.06443 -17.71831 -16.85628 -16.63923 -16.30319 -16.00040 -15.79558 -15.23121 -14.96007 -14.84609 -14.55724 -14.42135 -14.24068 -13.82968 -13.80596 -13.66480 -13.55090 -13.42713 -13.24033 -13.12521 -12.73517 -12.52527 -12.19749 -12.16852 -12.02934 -11.86624 -11.49520 -11.37573 -11.10687 -10.74748 -10.62229 -10.59023 -10.40397 -10.36386 -10.25931 -10.10677 -0.61668 -0.05689 1.09859 1.44893 1.51051 1.62724 1.75083 1.90239 2.00119 2.03735 2.07248 2.59666 2.66888 3.06498 3.35977 3.45505 3.62685 3.69484 3.72094 3.83242 4.03273 4.07827 4.08895 4.25576 4.53247 4.55964 4.61863 4.64967 4.78886 4.81145 4.81876 4.83442 4.84304 4.87174 4.87893 4.93014 5.13900 5.23357 5.25103 5.30531 5.38206 5.53472 5.57479 5.62389 5.66187 6.33977 6.59176 6.64040 7.01231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.040 2.960 3 C -0.456 4.456 4 C -0.408 4.408 5 C -0.115 4.115 6 C -0.093 4.093 7 C 0.126 3.874 8 N -0.709 5.709 9 C 0.561 3.439 10 O -0.576 6.576 11 C -0.195 4.195 12 C 0.001 3.999 13 C -0.174 4.174 14 C -0.080 4.080 15 O -0.551 6.551 16 Si 0.981 3.019 17 H -0.250 1.250 18 H -0.269 1.269 19 H -0.241 1.241 20 C 0.116 3.884 21 N -0.495 5.495 22 C 0.145 3.855 23 C -0.405 4.405 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.390 0.610 41 H 0.173 0.827 42 H 0.191 0.809 43 H 0.078 0.922 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.755 3.566 3.858 5.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.233 2.767 3 C -0.563 4.563 4 C -0.493 4.493 5 C -0.153 4.153 6 C -0.111 4.111 7 C 0.003 3.997 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.456 6.456 11 C -0.201 4.201 12 C -0.025 4.025 13 C -0.177 4.177 14 C -0.190 4.190 15 O -0.358 6.358 16 Si 0.803 3.197 17 H -0.174 1.174 18 H -0.194 1.194 19 H -0.164 1.164 20 C -0.039 4.039 21 N -0.202 5.202 22 C -0.013 4.013 23 C -0.490 4.490 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.253 0.747 38 H 0.160 0.840 39 H 0.145 0.855 40 H 0.240 0.760 41 H 0.190 0.810 42 H 0.207 0.793 43 H 0.097 0.903 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.974 2.942 4.288 5.290 hybrid contribution -0.381 0.085 -0.783 0.875 sum 0.593 3.026 3.505 4.669 Atomic orbital electron populations 1.26265 1.21971 1.04317 1.04343 0.79411 0.65280 0.65862 0.66144 1.26185 1.06900 1.18845 1.04409 1.26603 1.05767 1.06329 1.10646 1.21801 1.00760 0.98589 0.94114 1.21916 0.99680 0.95187 0.94349 1.21573 0.86107 0.94957 0.97043 1.45909 1.30459 1.27828 1.31891 1.18235 0.83204 0.80600 0.83167 1.90797 1.64319 1.63318 1.27206 1.21036 0.98979 0.99807 1.00241 1.21684 0.91792 0.91867 0.97166 1.21460 0.97779 1.00505 0.97921 1.25110 1.05649 0.96189 0.92060 1.86529 1.61537 1.60170 1.27576 0.85227 0.76788 0.80541 0.77100 1.17372 1.19404 1.16424 1.23215 0.98139 0.90639 0.91953 1.67786 1.10046 1.10904 1.31503 1.23427 0.90134 0.97972 0.89812 1.26957 1.02775 1.08114 1.11145 0.91347 0.91293 0.91422 0.91214 0.90835 0.91349 0.89949 0.90537 0.91317 0.92394 0.88701 0.92231 0.92087 0.74748 0.84034 0.85466 0.76020 0.81018 0.79273 0.90320 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.94 8.65 113.37 0.98 2.92 16 2 Si 1.04 -8.12 13.35 68.60 0.92 -7.20 16 3 C -0.46 2.59 8.65 113.37 0.98 3.57 16 4 C -0.41 2.55 5.85 72.72 0.43 2.98 16 5 C -0.12 0.62 5.17 31.52 0.16 0.79 16 6 C -0.09 0.49 2.19 -9.54 -0.02 0.47 16 7 C 0.13 -0.04 5.05 86.38 0.44 0.39 16 8 N -0.71 0.80 5.32 -465.98 -2.48 -1.68 16 9 C 0.56 3.13 7.78 86.79 0.68 3.80 16 10 O -0.58 -8.29 16.42 -3.88 -0.06 -8.36 16 11 C -0.20 -0.52 5.89 -19.99 -0.12 -0.63 16 12 C 0.00 0.01 9.38 22.73 0.21 0.22 16 13 C -0.17 -0.01 5.35 -19.81 -0.11 -0.12 16 14 C -0.08 0.19 2.82 71.24 0.20 0.39 16 15 O -0.55 0.15 12.84 -148.98 -1.91 -1.77 16 16 Si 0.98 -3.84 25.16 68.60 1.73 -2.11 16 17 H -0.25 0.79 7.11 99.48 0.71 1.50 16 18 H -0.27 0.01 7.11 99.48 0.71 0.72 16 19 H -0.24 1.18 7.04 99.48 0.70 1.88 16 20 C 0.12 -0.01 9.84 84.69 0.83 0.82 16 21 N -0.49 -0.87 10.35 -194.75 -2.01 -2.88 16 22 C 0.15 -0.14 10.71 85.04 0.91 0.77 16 23 C -0.40 2.21 5.30 73.05 0.39 2.60 16 24 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 25 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 26 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 27 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 28 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.08 -0.57 8.04 -2.39 -0.02 -0.59 16 31 H 0.08 -0.41 8.04 -2.39 -0.02 -0.43 16 32 H 0.07 -0.48 7.55 -2.39 -0.02 -0.49 16 33 H 0.06 -0.20 8.04 -2.39 -0.02 -0.22 16 34 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 35 H 0.06 0.15 8.07 -2.38 -0.02 0.13 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.41 -3.11 5.91 -92.71 -0.55 -3.65 16 38 H 0.14 0.80 7.74 -2.91 -0.02 0.78 16 39 H 0.13 -0.45 7.96 -2.39 -0.02 -0.46 16 40 H 0.39 -2.76 8.70 -74.06 -0.64 -3.41 16 41 H 0.17 -0.70 4.87 -2.91 -0.01 -0.72 16 42 H 0.19 -1.58 6.42 -2.91 -0.02 -1.60 16 43 H 0.08 -0.33 8.03 -2.39 -0.02 -0.35 16 44 H 0.08 -0.49 8.06 -2.38 -0.02 -0.51 16 Total: 0.00 -17.79 358.81 2.70 -15.10 By element: Atomic # 1 Polarization: -10.63 SS G_CDS: 0.56 Total: -10.07 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 5.96 Total: 18.97 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -4.49 Total: -4.56 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.98 Total: -10.12 kcal Atomic # 14 Polarization: -11.95 SS G_CDS: 2.64 Total: -9.31 kcal Total: -17.79 2.70 -15.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.900 kcal (2) G-P(sol) polarization free energy of solvation -17.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds