Wall clock time and date at job start Sun Mar 7 2021 10:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86292 * 111.24195 * 2 1 4 4 C 1.89336 * 111.45906 * 125.06866 * 2 1 3 5 5 C 1.55151 * 101.34920 * 120.85651 * 4 2 1 6 6 C 1.53573 * 111.28891 * 331.41076 * 5 4 2 7 7 C 1.52997 * 109.47100 * 169.06554 * 6 5 4 8 8 N 1.46505 * 109.47212 * 66.45189 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 C 1.47540 * 119.99722 * 179.97438 * 9 8 7 12 12 C 1.39672 * 120.18966 * 359.72774 * 11 9 8 13 13 C 1.37831 * 119.90664 * 179.76414 * 12 11 9 14 14 C 1.38509 * 120.29712 * 0.51329 * 13 12 11 15 15 C 1.50703 * 119.80041 * 179.72062 * 14 13 12 16 16 O 1.42899 * 109.47233 * 120.02403 * 15 14 13 17 17 Si 1.86291 * 109.47547 * 0.02562 * 15 14 13 18 18 H 1.48505 * 109.47131 * 60.00205 * 17 15 14 19 19 H 1.48498 * 109.47460 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47418 * 300.00419 * 17 15 14 21 21 C 1.38096 * 120.39400 * 359.74013 * 14 13 12 22 22 C 1.38669 * 120.08356 * 359.97438 * 21 14 13 23 23 O 1.35647 * 120.15214 * 180.02562 * 22 21 14 24 24 C 1.55916 * 109.50571 * 49.03690 * 6 5 4 25 25 H 1.08998 * 109.47072 * 294.93046 * 1 2 3 26 26 H 1.08995 * 109.47075 * 54.93544 * 1 2 3 27 27 H 1.09003 * 109.47264 * 174.93199 * 1 2 3 28 28 H 1.09001 * 109.47347 * 185.06870 * 3 2 1 29 29 H 1.08998 * 109.47139 * 305.06779 * 3 2 1 30 30 H 1.09000 * 109.47181 * 65.06758 * 3 2 1 31 31 H 1.08997 * 111.04875 * 2.83447 * 4 2 1 32 32 H 1.09003 * 111.08063 * 238.88500 * 4 2 1 33 33 H 1.09004 * 109.11907 * 210.93239 * 5 4 2 34 34 H 1.08995 * 109.12271 * 91.89482 * 5 4 2 35 35 H 1.09003 * 109.47292 * 289.06197 * 6 5 4 36 36 H 1.09002 * 109.47153 * 306.45181 * 7 6 5 37 37 H 1.09001 * 109.46832 * 186.45372 * 7 6 5 38 38 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 39 39 H 1.07996 * 120.04814 * 0.02562 * 12 11 9 40 40 H 1.08003 * 119.85174 * 180.25340 * 13 12 11 41 41 H 1.09007 * 109.46664 * 240.01772 * 15 14 13 42 42 H 0.96702 * 114.00513 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.95861 * 180.02562 * 21 14 13 44 44 H 0.96698 * 114.00529 * 269.98442 * 23 22 21 45 45 H 1.09004 * 111.42245 * 76.91333 * 24 6 5 46 46 H 1.09005 * 111.42450 * 201.84705 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5379 1.7364 0.0000 4 6 2.5556 -1.0124 1.4422 5 6 3.3935 -2.0805 0.6909 6 6 2.8148 -2.3637 -0.7032 7 6 3.8087 -3.2048 -1.5066 8 7 3.9330 -4.5303 -0.8952 9 6 4.7590 -5.4474 -1.4366 10 8 5.4013 -5.1745 -2.4323 11 6 4.8846 -6.7821 -0.8205 12 6 4.1537 -7.0975 0.3271 13 6 4.2718 -8.3478 0.8950 14 6 5.1206 -9.2905 0.3389 15 6 5.2459 -10.6520 0.9727 16 8 4.8571 -11.6536 0.0306 17 14 4.1403 -10.7446 2.4692 18 1 2.7313 -10.5176 2.0585 19 1 4.2642 -12.0860 3.0941 20 1 4.5442 -9.7037 3.4483 21 6 5.8530 -8.9901 -0.7926 22 6 5.7421 -7.7391 -1.3806 23 8 6.4605 -7.4427 -2.4924 24 6 2.5568 -1.0159 -1.4434 25 1 -0.3633 0.4332 0.9319 26 1 -0.3633 0.5904 -0.8411 27 1 -0.3634 -1.0237 -0.0908 28 1 3.6237 1.7042 -0.0908 29 1 2.1193 2.2889 -0.8411 30 1 2.2658 2.2320 0.9319 31 1 1.7533 -1.4765 2.0157 32 1 3.1882 -0.3989 2.0838 33 1 3.3972 -3.0038 1.2703 34 1 4.4176 -1.7224 0.5865 35 1 1.8758 -2.9080 -0.6031 36 1 4.7816 -2.7133 -1.5096 37 1 3.4513 -3.3093 -2.5311 38 1 3.4203 -4.7481 -0.1011 39 1 3.4937 -6.3642 0.7665 40 1 3.7031 -8.5921 1.7801 41 1 6.2802 -10.8186 1.2741 42 1 4.9133 -12.5570 0.3712 43 1 6.5125 -9.7306 -1.2206 44 1 7.3294 -7.0602 -2.3089 45 1 3.4839 -0.5865 -1.8233 46 1 1.8202 -1.1329 -2.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:05:38 Heat of formation + Delta-G solvation = -133.912043 kcal Electronic energy + Delta-G solvation = -24931.785765 eV Core-core repulsion = 21330.435178 eV Total energy + Delta-G solvation = -3601.350588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52653 -39.90645 -38.41853 -37.68455 -37.20209 -34.65489 -32.85640 -31.08008 -30.52626 -29.28531 -28.55984 -27.95913 -26.40586 -24.18342 -23.82682 -23.11567 -21.41860 -20.92528 -19.25625 -18.73146 -18.44392 -17.57592 -16.76251 -16.68704 -16.25417 -16.18945 -15.81193 -15.67277 -15.27579 -14.97441 -14.70434 -14.60634 -14.31403 -14.02555 -13.97679 -13.88802 -13.78070 -13.58492 -13.41609 -13.34016 -13.17450 -13.03465 -12.67696 -12.49698 -12.31699 -12.12151 -12.09085 -11.96244 -11.58741 -11.52800 -10.94229 -10.81884 -10.55731 -10.49952 -10.41208 -10.07705 -9.93655 -9.70093 -0.34296 0.16235 1.00718 1.32892 1.39520 1.53287 1.79445 1.79846 1.82756 1.84929 2.19783 2.48583 2.64489 3.09137 3.29057 3.60451 3.65931 3.72671 3.78785 3.91475 4.01609 4.08187 4.22055 4.26693 4.43687 4.45588 4.52710 4.59361 4.63938 4.66262 4.68051 4.68704 4.73764 4.75597 4.91327 4.98527 5.00577 5.07213 5.18648 5.19008 5.26231 5.33178 5.37270 5.42145 5.46719 5.51472 5.57945 6.45807 6.53210 6.77235 7.30978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.443 4.443 4 C -0.399 4.399 5 C -0.111 4.111 6 C -0.098 4.098 7 C 0.128 3.872 8 N -0.729 5.729 9 C 0.557 3.443 10 O -0.519 6.519 11 C -0.165 4.165 12 C -0.064 4.064 13 C -0.143 4.143 14 C -0.032 4.032 15 C -0.088 4.088 16 O -0.542 6.542 17 Si 0.948 3.052 18 H -0.245 1.245 19 H -0.255 1.255 20 H -0.248 1.248 21 C -0.125 4.125 22 C 0.173 3.827 23 O -0.475 6.475 24 C -0.391 4.391 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.383 0.617 43 H 0.141 0.859 44 H 0.397 0.603 45 H 0.083 0.917 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.914 0.240 5.892 5.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.551 4.551 4 C -0.485 4.485 5 C -0.149 4.149 6 C -0.117 4.117 7 C 0.005 3.995 8 N -0.383 5.383 9 C 0.344 3.656 10 O -0.395 6.395 11 C -0.168 4.168 12 C -0.083 4.083 13 C -0.160 4.160 14 C -0.033 4.033 15 C -0.198 4.198 16 O -0.348 6.348 17 Si 0.770 3.230 18 H -0.169 1.169 19 H -0.179 1.179 20 H -0.172 1.172 21 C -0.143 4.143 22 C 0.126 3.874 23 O -0.286 6.286 24 C -0.477 4.477 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.233 0.767 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.100 0.900 42 H 0.231 0.769 43 H 0.159 0.841 44 H 0.256 0.744 45 H 0.102 0.898 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.577 0.770 5.200 5.488 hybrid contribution 0.549 -0.550 0.592 0.977 sum -1.028 0.221 5.792 5.886 Atomic orbital electron populations 1.26023 1.19981 1.04554 1.04524 0.80516 0.67533 0.67480 0.67979 1.26021 1.06657 1.17974 1.04475 1.26500 1.05157 1.06672 1.10171 1.21774 0.99869 0.99131 0.94134 1.21889 0.98630 0.96531 0.94665 1.21492 0.99708 0.81285 0.96990 1.46008 1.46009 1.14260 1.32005 1.18033 0.79857 0.83870 0.83829 1.90831 1.44656 1.79580 1.24446 1.20434 1.03313 0.95003 0.98089 1.21085 0.97154 0.96467 0.93606 1.20902 0.99668 0.94072 1.01398 1.19338 0.95051 0.93684 0.95203 1.24827 1.05917 0.87793 1.01304 1.86518 1.90096 1.17856 1.40378 0.85709 0.80200 0.81429 0.75658 1.16854 1.17866 1.17178 1.21303 1.01446 0.96459 0.95137 1.18483 0.92324 0.91160 0.85435 1.84766 1.33201 1.83933 1.26745 1.26763 1.06810 1.03826 1.10284 0.91124 0.91136 0.91109 0.91030 0.91134 0.91188 0.90560 0.90324 0.92139 0.91605 0.90278 0.91180 0.91148 0.76665 0.84906 0.85346 0.90011 0.76918 0.84082 0.74443 0.89826 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.95 8.65 101.05 0.87 1.82 16 2 Si 0.97 -3.18 13.36 -169.99 -2.27 -5.45 16 3 C -0.44 0.86 8.65 101.05 0.87 1.73 16 4 C -0.40 0.96 5.85 38.30 0.22 1.18 16 5 C -0.11 0.22 5.16 -25.30 -0.13 0.09 16 6 C -0.10 0.17 2.19 -88.77 -0.19 -0.02 16 7 C 0.13 0.06 5.05 -4.04 -0.02 0.04 16 8 N -0.73 -0.37 5.32 -61.35 -0.33 -0.70 16 9 C 0.56 2.01 7.76 -12.47 -0.10 1.92 16 10 O -0.52 -3.76 15.16 -16.58 -0.25 -4.01 16 11 C -0.16 -0.39 5.89 -104.84 -0.62 -1.01 16 12 C -0.06 0.01 9.54 -39.20 -0.37 -0.37 16 13 C -0.14 0.00 8.65 -39.63 -0.34 -0.35 16 14 C -0.03 -0.02 5.43 -104.57 -0.57 -0.59 16 15 C -0.09 0.11 2.80 36.01 0.10 0.21 16 16 O -0.54 0.19 12.74 -35.23 -0.45 -0.26 16 17 Si 0.95 -1.60 25.05 -169.99 -4.26 -5.86 16 18 H -0.25 0.07 7.11 56.52 0.40 0.47 16 19 H -0.25 0.36 7.11 56.52 0.40 0.76 16 20 H -0.25 0.36 7.11 56.52 0.40 0.76 16 21 C -0.12 -0.21 9.53 -39.47 -0.38 -0.59 16 22 C 0.17 0.51 6.72 -38.69 -0.26 0.25 16 23 O -0.48 -1.74 11.58 -40.51 -0.47 -2.21 16 24 C -0.39 0.83 5.29 38.72 0.20 1.03 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.08 -0.19 8.04 -51.93 -0.42 -0.61 16 32 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 33 H 0.06 -0.14 7.55 -51.93 -0.39 -0.54 16 34 H 0.07 -0.09 8.04 -51.93 -0.42 -0.51 16 35 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 36 H 0.07 0.09 8.07 -51.93 -0.42 -0.33 16 37 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.40 -0.84 5.87 -40.82 -0.24 -1.08 16 39 H 0.13 -0.42 6.40 -52.49 -0.34 -0.76 16 40 H 0.13 -0.22 4.85 -52.48 -0.25 -0.47 16 41 H 0.08 -0.26 7.96 -51.92 -0.41 -0.67 16 42 H 0.38 -1.85 8.74 45.56 0.40 -1.45 16 43 H 0.14 0.13 8.06 -52.49 -0.42 -0.30 16 44 H 0.40 -0.13 9.06 45.56 0.41 0.28 16 45 H 0.08 -0.15 8.03 -51.93 -0.42 -0.57 16 46 H 0.08 -0.17 8.06 -51.93 -0.42 -0.59 16 LS Contribution 372.50 15.07 5.61 5.61 Total: 0.00 -8.91 372.50 -8.99 -17.89 By element: Atomic # 1 Polarization: -4.50 SS G_CDS: -5.88 Total: -10.37 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.70 Total: 5.35 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -0.33 Total: -0.70 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.17 Total: -6.47 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: -6.53 Total: -11.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -8.91 -8.99 -17.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.019 kcal (2) G-P(sol) polarization free energy of solvation -8.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds