Wall clock time and date at job start Sun Mar 7 2021 10:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46907 * 110.99569 * 2 1 4 4 C 1.39042 * 110.99842 * 123.95039 * 2 1 3 5 5 C 1.39205 * 119.93478 * 300.00288 * 4 2 1 6 6 C 1.37630 * 120.06842 * 180.25737 * 5 4 2 7 7 C 1.39777 * 119.92910 * 359.47542 * 6 5 4 8 8 C 1.47518 * 120.06394 * 180.25619 * 7 6 5 9 9 O 1.21600 * 119.99781 * 180.28906 * 8 7 6 10 10 N 1.34781 * 120.00379 * 0.29371 * 8 7 6 11 11 C 1.46502 * 120.00041 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46978 * 179.97438 * 11 10 8 13 13 C 1.53570 * 109.47286 * 66.45400 * 12 11 10 14 14 C 1.55141 * 111.29283 * 169.06119 * 13 12 11 15 15 Si 1.89337 * 101.34784 * 331.41171 * 14 13 12 16 16 C 1.86300 * 111.45729 * 120.85063 * 15 14 13 17 17 C 1.86295 * 111.46229 * 245.79780 * 15 14 13 18 18 C 1.55909 * 109.47191 * 186.50072 * 12 11 10 19 19 C 1.39809 * 119.86264 * 0.54410 * 7 6 5 20 20 C 1.37590 * 119.93332 * 359.73409 * 19 7 6 21 21 C 1.50693 * 119.96485 * 180.02562 * 20 19 7 22 22 O 1.42900 * 109.47416 * 104.97786 * 21 20 19 23 23 Si 1.86297 * 109.47234 * 344.97328 * 21 20 19 24 24 H 1.48499 * 109.47340 * 60.00388 * 23 21 20 25 25 H 1.48501 * 109.47472 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47237 * 300.00442 * 23 21 20 27 27 H 1.08996 * 109.47739 * 296.04659 * 1 2 3 28 28 H 1.08997 * 109.47412 * 56.05052 * 1 2 3 29 29 H 1.09003 * 109.46742 * 176.04867 * 1 2 3 30 30 H 1.08999 * 109.46819 * 183.95132 * 3 2 1 31 31 H 1.08997 * 109.46892 * 303.95261 * 3 2 1 32 32 H 1.08999 * 109.47206 * 63.95362 * 3 2 1 33 33 H 1.08002 * 119.96063 * 359.97438 * 5 4 2 34 34 H 1.08004 * 120.03053 * 179.71854 * 6 5 4 35 35 H 0.96998 * 119.99880 * 359.97438 * 10 8 7 36 36 H 1.08998 * 109.47184 * 299.99569 * 11 10 8 37 37 H 1.09002 * 109.47003 * 59.99943 * 11 10 8 38 38 H 1.09001 * 109.46924 * 306.45414 * 12 11 10 39 39 H 1.09004 * 109.12522 * 289.54988 * 13 12 11 40 40 H 1.09005 * 109.12500 * 48.57516 * 13 12 11 41 41 H 1.08997 * 111.05240 * 89.42862 * 14 13 12 42 42 H 1.09004 * 111.05279 * 213.35907 * 14 13 12 43 43 H 1.09005 * 109.47271 * 60.00702 * 16 15 14 44 44 H 1.09000 * 109.47071 * 180.02562 * 16 15 14 45 45 H 1.08995 * 109.47813 * 300.00411 * 16 15 14 46 46 H 1.09005 * 109.46683 * 59.99971 * 17 15 14 47 47 H 1.08998 * 109.47456 * 179.97438 * 17 15 14 48 48 H 1.08996 * 109.47466 * 300.00446 * 17 15 14 49 49 H 1.08999 * 111.42817 * 316.88511 * 18 12 11 50 50 H 1.09004 * 111.42819 * 81.82426 * 18 12 11 51 51 H 1.08007 * 120.02993 * 179.75304 * 19 7 6 52 52 H 1.09002 * 109.47105 * 224.97456 * 21 20 19 53 53 H 0.96698 * 113.99844 * 299.99496 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9672 -0.7249 1.0768 5 6 1.6530 -0.3413 2.3775 6 6 2.1490 -1.0537 3.4455 7 6 2.9601 -2.1701 3.2228 8 6 3.4887 -2.9392 4.3652 9 8 4.1985 -3.9071 4.1702 10 7 3.1849 -2.5692 5.6252 11 6 3.7095 -3.3335 6.7597 12 6 3.2189 -2.7074 8.0667 13 6 1.6961 -2.8744 8.1745 14 6 1.1878 -2.5051 9.5929 15 14 2.7031 -2.9174 10.6507 16 6 3.3128 -1.4222 11.5800 17 6 2.3613 -4.3376 11.8069 18 6 3.9071 -3.4163 9.2728 19 6 3.2742 -2.5526 1.9153 20 6 2.7800 -1.8329 0.8518 21 6 3.1176 -2.2450 -0.5578 22 8 1.9825 -2.8750 -1.1548 23 14 4.5476 -3.4388 -0.5302 24 1 4.1751 -4.6392 0.2605 25 1 4.8808 -3.8444 -1.9194 26 1 5.7272 -2.7839 0.0902 27 1 -0.3634 0.4512 0.9232 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3434 -0.0708 31 1 1.5897 1.9163 -0.8524 32 1 1.7042 1.8724 0.9233 33 1 1.0230 0.5191 2.5487 34 1 1.9085 -0.7528 4.4545 35 1 2.6190 -1.7970 5.7807 36 1 3.3599 -4.3639 6.6963 37 1 4.7991 -3.3173 6.7359 38 1 3.4698 -1.6468 8.0781 39 1 1.2132 -2.2273 7.4423 40 1 1.4344 -3.9106 7.9599 41 1 0.9423 -1.4451 9.6572 42 1 0.3335 -3.1204 9.8753 43 1 2.5233 -1.0553 12.2360 44 1 4.1835 -1.6951 12.1762 45 1 3.5885 -0.6413 10.8713 46 1 2.0938 -5.2214 11.2276 47 1 3.2526 -4.5474 12.3982 48 1 1.5377 -4.0755 12.4709 49 1 3.9318 -4.4976 9.1380 50 1 4.9054 -3.0173 9.4525 51 1 3.9040 -3.4124 1.7401 52 1 3.3911 -1.3638 -1.1383 53 1 1.6831 -3.6682 -0.6898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_13422196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:09:44 Heat of formation + Delta-G solvation = -73.751494 kcal Electronic energy + Delta-G solvation = -29053.921212 eV Core-core repulsion = 25241.822806 eV Total energy + Delta-G solvation = -3812.098406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72684 -40.50882 -38.01482 -37.76996 -37.18763 -34.83820 -32.81737 -31.47207 -30.32082 -29.10428 -28.49477 -28.37543 -27.39606 -26.90181 -25.54711 -23.97374 -23.22501 -22.79659 -21.29358 -20.73958 -19.15368 -17.98084 -17.63571 -17.41749 -16.61589 -16.53777 -16.48956 -16.07205 -15.78639 -15.61134 -15.48662 -15.05638 -14.74355 -14.71642 -14.63156 -14.38753 -14.02106 -13.85719 -13.81034 -13.74573 -13.47956 -13.43708 -13.24726 -13.14635 -13.10899 -12.96777 -12.68092 -12.59369 -12.53534 -12.26010 -12.21018 -12.12849 -11.87247 -11.80135 -11.39386 -11.22586 -10.75801 -10.39575 -10.37988 -10.34041 -10.19469 -10.13256 -9.78230 -9.46463 -0.40844 0.12501 1.13641 1.36154 1.44966 1.63246 1.74264 1.84851 2.00515 2.05117 2.08276 2.60636 2.65723 2.81450 3.48422 3.58278 3.65809 3.78271 3.81795 4.01937 4.02386 4.10502 4.14975 4.23787 4.41296 4.46047 4.51607 4.56066 4.60600 4.63365 4.64396 4.66832 4.76518 4.79809 4.81151 4.83068 4.84796 4.86453 4.88903 4.98897 5.02891 5.05296 5.10007 5.12981 5.23598 5.24447 5.28058 5.36802 5.51915 5.53832 5.56287 5.61368 5.65196 5.89387 6.30732 6.40224 6.73105 7.06817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.521 5.521 3 C 0.024 3.976 4 C 0.144 3.856 5 C -0.154 4.154 6 C -0.056 4.056 7 C -0.149 4.149 8 C 0.553 3.447 9 O -0.584 6.584 10 N -0.710 5.710 11 C 0.126 3.874 12 C -0.092 4.092 13 C -0.114 4.114 14 C -0.407 4.407 15 Si 1.040 2.960 16 C -0.455 4.455 17 C -0.462 4.462 18 C -0.407 4.407 19 C -0.076 4.076 20 C -0.114 4.114 21 C -0.045 4.045 22 O -0.538 6.538 23 Si 0.956 3.044 24 H -0.263 1.263 25 H -0.263 1.263 26 H -0.265 1.265 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.124 0.876 52 H 0.124 0.876 53 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 5.892 4.343 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.242 5.242 3 C -0.122 4.122 4 C 0.049 3.951 5 C -0.174 4.174 6 C -0.076 4.076 7 C -0.153 4.153 8 C 0.341 3.659 9 O -0.465 6.465 10 N -0.362 5.362 11 C 0.002 3.998 12 C -0.110 4.110 13 C -0.152 4.152 14 C -0.492 4.492 15 Si 1.233 2.767 16 C -0.563 4.563 17 C -0.569 4.569 18 C -0.491 4.491 19 C -0.096 4.096 20 C -0.116 4.116 21 C -0.158 4.158 22 O -0.343 6.343 23 Si 0.782 3.218 24 H -0.188 1.188 25 H -0.188 1.188 26 H -0.189 1.189 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.102 0.898 51 H 0.142 0.858 52 H 0.142 0.858 53 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.691 4.910 3.416 6.559 hybrid contribution -0.603 0.137 0.997 1.174 sum -3.294 5.047 4.413 7.470 Atomic orbital electron populations 1.22447 0.84364 1.02816 1.01773 1.59375 1.09647 1.14810 1.40355 1.22551 1.01030 0.86470 1.02128 1.18932 0.93742 0.92842 0.89615 1.21881 1.01718 1.01588 0.92221 1.21424 0.93414 0.91979 1.00747 1.19843 1.03566 0.99098 0.92749 1.18496 0.79796 0.83574 0.83992 1.90785 1.39837 1.29808 1.86116 1.45902 1.52391 1.33144 1.04771 1.21552 0.98458 0.95317 0.84428 1.21881 0.95414 1.01104 0.92635 1.21791 0.93655 1.01830 0.97890 1.26592 1.12937 1.04922 1.04765 0.79419 0.66125 0.65709 0.65473 1.26177 1.06223 1.15196 1.08672 1.26260 1.04962 1.14508 1.11142 1.26959 1.08819 1.03520 1.09841 1.21181 0.97819 0.98750 0.91833 1.20231 0.99402 0.96156 0.95781 1.24580 0.96394 1.03368 0.91413 1.86537 1.47800 1.45434 1.54561 0.85657 0.77545 0.79019 0.79542 1.18751 1.18791 1.18932 0.94016 0.89952 0.91681 0.91327 0.89664 0.93946 0.83028 0.82359 0.74732 0.92442 0.92361 0.88768 0.91340 0.92490 0.89864 0.90469 0.91087 0.91380 0.90847 0.91451 0.91366 0.91189 0.90432 0.89820 0.85807 0.85792 0.77003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 9.34 127.69 1.19 1.11 16 2 N -0.52 0.11 4.20 -745.10 -3.13 -3.02 16 3 C 0.02 -0.08 9.38 127.69 1.20 1.11 16 4 C 0.14 0.12 4.70 38.47 0.18 0.30 16 5 C -0.15 0.44 8.53 22.36 0.19 0.63 16 6 C -0.06 0.16 9.53 22.50 0.21 0.38 16 7 C -0.15 -0.57 5.88 -20.08 -0.12 -0.69 16 8 C 0.55 4.06 7.76 86.69 0.67 4.74 16 9 O -0.58 -9.64 16.34 -4.03 -0.07 -9.71 16 10 N -0.71 -0.10 5.32 -466.26 -2.48 -2.58 16 11 C 0.13 0.11 5.05 86.38 0.44 0.54 16 12 C -0.09 0.43 2.19 -9.59 -0.02 0.41 16 13 C -0.11 0.59 5.16 31.52 0.16 0.75 16 14 C -0.41 2.59 5.85 72.72 0.43 3.02 16 15 Si 1.04 -8.01 13.36 68.60 0.92 -7.09 16 16 C -0.46 2.63 8.65 113.37 0.98 3.61 16 17 C -0.46 1.91 8.65 113.37 0.98 2.90 16 18 C -0.41 1.99 5.29 72.99 0.39 2.37 16 19 C -0.08 -0.45 8.19 22.50 0.18 -0.26 16 20 C -0.11 -0.37 5.27 -19.78 -0.10 -0.48 16 21 C -0.05 -0.12 2.33 71.23 0.17 0.04 16 22 O -0.54 -1.64 12.88 -148.98 -1.92 -3.56 16 23 Si 0.96 4.31 25.49 68.60 1.75 6.06 16 24 H -0.26 -1.73 6.73 99.48 0.67 -1.06 16 25 H -0.26 -1.66 7.11 99.48 0.71 -0.96 16 26 H -0.26 -1.83 7.11 99.48 0.71 -1.13 16 27 H 0.04 -0.21 7.10 -2.39 -0.02 -0.23 16 28 H 0.08 -0.31 8.12 -2.39 -0.02 -0.33 16 29 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.08 -0.42 8.12 -2.39 -0.02 -0.44 16 32 H 0.04 -0.23 7.32 -2.39 -0.02 -0.25 16 33 H 0.15 -1.09 6.99 -2.91 -0.02 -1.11 16 34 H 0.16 -1.56 6.39 -2.91 -0.02 -1.58 16 35 H 0.41 -2.72 5.85 -92.71 -0.54 -3.26 16 36 H 0.06 0.22 8.07 -2.39 -0.02 0.20 16 37 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.09 -0.69 8.13 -2.39 -0.02 -0.71 16 39 H 0.07 -0.46 7.55 -2.38 -0.02 -0.48 16 40 H 0.06 -0.17 8.04 -2.38 -0.02 -0.19 16 41 H 0.08 -0.61 8.04 -2.39 -0.02 -0.63 16 42 H 0.08 -0.43 8.04 -2.38 -0.02 -0.44 16 43 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 44 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 45 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 46 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 47 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 48 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 49 H 0.08 -0.27 8.03 -2.39 -0.02 -0.29 16 50 H 0.08 -0.43 8.06 -2.38 -0.02 -0.45 16 51 H 0.12 1.06 4.46 -2.91 -0.01 1.05 16 52 H 0.12 0.26 7.78 -2.39 -0.02 0.24 16 53 H 0.38 -1.00 8.70 -74.06 -0.64 -1.65 16 Total: 0.00 -17.83 417.26 2.63 -15.21 By element: Atomic # 1 Polarization: -16.22 SS G_CDS: 0.43 Total: -15.79 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 7.13 Total: 20.48 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -5.61 Total: -5.60 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.98 Total: -13.27 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.67 Total: -1.03 kcal Total: -17.83 2.63 -15.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_13422196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.543 kcal (2) G-P(sol) polarization free energy of solvation -17.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds