Wall clock time and date at job start Sun Mar 7 2021 10:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 111.29248 * 2 1 4 4 C 1.89522 * 111.50035 * 234.84343 * 2 1 3 5 5 C 1.55142 * 101.35640 * 245.87503 * 4 2 1 6 6 C 1.53579 * 111.29168 * 331.41615 * 5 4 2 7 7 C 1.52995 * 109.47126 * 169.06332 * 6 5 4 8 8 N 1.46499 * 109.47347 * 64.95551 * 7 6 5 9 9 C 1.34772 * 120.00390 * 179.97438 * 8 7 6 10 10 O 1.21659 * 120.00114 * 0.02562 * 9 8 7 11 11 C 1.47044 * 120.00304 * 180.02562 * 9 8 7 12 12 C 1.36226 * 123.49074 * 179.70601 * 11 9 8 13 13 Cl 1.73600 * 124.60724 * 0.03354 * 12 11 9 14 14 S 1.70454 * 110.78805 * 179.91630 * 12 11 9 15 15 C 1.75496 * 92.46285 * 0.29562 * 14 12 11 16 16 C 1.50698 * 124.68324 * 179.83010 * 15 14 12 17 17 O 1.42899 * 109.47340 * 245.00247 * 16 15 14 18 18 Si 1.86297 * 109.47150 * 5.00304 * 16 15 14 19 19 H 1.48505 * 109.47171 * 179.97438 * 18 16 15 20 20 H 1.48500 * 109.47306 * 299.99761 * 18 16 15 21 21 H 1.48503 * 109.47215 * 60.00074 * 18 16 15 22 22 C 1.32694 * 110.63257 * 359.83185 * 15 14 12 23 23 C 1.55915 * 109.50369 * 49.04142 * 6 5 4 24 24 H 1.08996 * 109.47140 * 294.89926 * 1 2 3 25 25 H 1.09003 * 109.46829 * 54.89548 * 1 2 3 26 26 H 1.08996 * 109.47108 * 174.89587 * 1 2 3 27 27 H 1.08994 * 109.47400 * 185.10569 * 3 2 1 28 28 H 1.09005 * 109.47314 * 305.10736 * 3 2 1 29 29 H 1.09006 * 109.47297 * 65.10365 * 3 2 1 30 30 H 1.08998 * 111.03441 * 127.85278 * 4 2 1 31 31 H 1.09008 * 111.08072 * 3.91071 * 4 2 1 32 32 H 1.09003 * 109.12430 * 210.93608 * 5 4 2 33 33 H 1.09003 * 109.12868 * 91.90331 * 5 4 2 34 34 H 1.08998 * 109.47087 * 289.01591 * 6 5 4 35 35 H 1.09005 * 109.47049 * 184.95682 * 7 6 5 36 36 H 1.08998 * 109.47561 * 304.95752 * 7 6 5 37 37 H 0.96999 * 119.99704 * 0.02562 * 8 7 6 38 38 H 1.09004 * 109.47307 * 125.00356 * 16 15 14 39 39 H 0.96698 * 114.00270 * 180.02562 * 17 16 15 40 40 H 1.07993 * 123.45154 * 179.97438 * 22 15 14 41 41 H 1.09002 * 111.42836 * 76.90973 * 23 6 5 42 42 H 1.09001 * 111.42626 * 201.79891 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5395 1.7358 0.0000 4 6 2.5576 -1.0154 -1.4417 5 6 3.2480 -2.1828 -0.6884 6 6 3.7201 -1.7450 0.7059 7 6 4.1423 -2.9756 1.5110 8 7 5.3118 -3.5936 0.8812 9 6 5.8623 -4.6992 1.4206 10 8 5.3878 -5.1844 2.4303 11 6 7.0364 -5.3192 0.7887 12 6 7.6522 -6.4324 1.2759 13 17 7.1567 -7.2888 2.7024 14 16 8.9734 -6.8721 0.2928 15 6 8.7055 -5.5255 -0.8002 16 6 9.5464 -5.2263 -2.0145 17 8 10.2211 -3.9800 -1.8314 18 14 10.8012 -6.5829 -2.2505 19 1 11.6294 -6.2883 -3.4475 20 1 11.6740 -6.6640 -1.0519 21 1 10.1001 -7.8781 -2.4409 22 6 7.6603 -4.8072 -0.4099 23 6 2.5568 -1.0151 1.4440 24 1 -0.3633 0.4327 0.9321 25 1 -0.3633 0.5910 -0.8408 26 1 -0.3633 -1.0235 -0.0914 27 1 3.6251 1.7027 -0.0914 28 1 2.1208 2.2890 -0.8407 29 1 2.2684 2.2315 0.9322 30 1 3.2819 -0.4364 -2.0148 31 1 1.7572 -1.3828 -2.0839 32 1 4.1078 -2.5218 -1.2664 33 1 2.5427 -3.0073 -0.5841 34 1 4.5687 -1.0682 0.6063 35 1 4.3936 -2.6755 2.5283 36 1 3.3218 -3.6926 1.5359 37 1 5.6904 -3.2066 0.0763 38 1 8.9058 -5.1667 -2.8944 39 1 10.7818 -3.7231 -2.5761 40 1 7.3120 -3.9296 -0.9340 41 1 1.8198 -1.7228 1.8236 42 1 2.9319 -0.3711 2.2394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:10:08 Heat of formation + Delta-G solvation = -93.063305 kcal Electronic energy + Delta-G solvation = -23430.797942 eV Core-core repulsion = 19879.253335 eV Total energy + Delta-G solvation = -3551.544607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 347.069 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91531 -38.92515 -38.06551 -37.62015 -37.01477 -34.52965 -31.83871 -30.58190 -29.27039 -28.54722 -27.63465 -26.84290 -24.97712 -23.87714 -21.98584 -20.99079 -20.42867 -19.21072 -18.66292 -17.96930 -16.90110 -16.68396 -16.40146 -16.01585 -15.74613 -15.31708 -14.96021 -14.86125 -14.63093 -14.42470 -14.37788 -14.10360 -13.99468 -13.95496 -13.66588 -13.57064 -13.37366 -13.20983 -13.04428 -12.65979 -12.59142 -12.40380 -12.34141 -12.29071 -12.03806 -11.94746 -11.89242 -11.50324 -10.92915 -10.81113 -10.59510 -10.48222 -10.40461 -10.01805 -9.83000 -9.60634 -0.54329 -0.19572 0.44492 0.74958 0.91587 1.12585 1.27899 1.31282 1.54930 1.73531 1.81475 1.84454 2.30287 2.37656 2.50493 3.09895 3.51086 3.73981 3.89583 3.91867 3.97579 4.04722 4.15836 4.42264 4.46368 4.48628 4.57003 4.65239 4.67885 4.69331 4.69838 4.72785 4.76865 4.92640 4.96304 5.03392 5.09410 5.21290 5.35453 5.38976 5.44001 5.48059 5.53405 6.34838 6.54248 7.30344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.966 3.034 3 C -0.442 4.442 4 C -0.398 4.398 5 C -0.112 4.112 6 C -0.098 4.098 7 C 0.129 3.871 8 N -0.724 5.724 9 C 0.574 3.426 10 O -0.519 6.519 11 C -0.157 4.157 12 C -0.113 4.113 13 Cl 0.027 6.973 14 S 0.226 5.774 15 C -0.190 4.190 16 C -0.039 4.039 17 O -0.541 6.541 18 Si 0.879 3.121 19 H -0.224 1.224 20 H -0.226 1.226 21 H -0.229 1.229 22 C -0.068 4.068 23 C -0.390 4.390 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.385 0.615 40 H 0.158 0.842 41 H 0.083 0.917 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 2.757 -6.212 6.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.164 2.836 3 C -0.551 4.551 4 C -0.484 4.484 5 C -0.149 4.149 6 C -0.117 4.117 7 C 0.006 3.994 8 N -0.377 5.377 9 C 0.359 3.641 10 O -0.396 6.396 11 C -0.176 4.176 12 C -0.260 4.260 13 Cl 0.056 6.944 14 S 0.491 5.509 15 C -0.307 4.307 16 C -0.152 4.152 17 O -0.347 6.347 18 Si 0.698 3.302 19 H -0.146 1.146 20 H -0.149 1.149 21 H -0.152 1.152 22 C -0.098 4.098 23 C -0.477 4.477 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.233 0.767 40 H 0.175 0.825 41 H 0.102 0.898 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.173 0.501 -4.822 5.313 hybrid contribution -0.862 1.555 -0.715 1.916 sum 1.311 2.056 -5.538 6.051 Atomic orbital electron populations 1.26019 1.20020 1.04596 1.04482 0.80548 0.67491 0.67549 0.68050 1.26022 1.06596 1.17918 1.04518 1.26509 1.05537 1.06260 1.10082 1.21772 1.00483 0.98524 0.94135 1.21881 0.98981 0.96146 0.94655 1.21499 0.87203 0.94012 0.96716 1.45900 1.32343 1.28691 1.30755 1.17373 0.82392 0.80404 0.83893 1.90879 1.62341 1.62424 1.23933 1.20237 1.00701 0.97973 0.98702 1.25363 1.02998 0.99668 0.97953 1.98438 1.89830 1.73655 1.32458 1.83385 1.25071 1.26708 1.15764 1.23524 1.02343 1.01983 1.02882 1.23941 1.00214 0.95564 0.95461 1.86516 1.64779 1.36871 1.46572 0.86447 0.80615 0.78629 0.84513 1.14585 1.14883 1.15189 1.20970 0.94542 0.99907 0.94362 1.26756 1.02773 1.07840 1.10290 0.91109 0.91223 0.91040 0.91091 0.91154 0.91128 0.90571 0.90358 0.92110 0.91610 0.90241 0.91118 0.91121 0.76560 0.89150 0.76662 0.82486 0.89836 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.83 8.65 101.05 0.87 1.70 16 2 Si 0.97 -3.14 13.37 -169.99 -2.27 -5.41 16 3 C -0.44 0.94 8.65 101.05 0.87 1.82 16 4 C -0.40 0.94 5.85 38.29 0.22 1.16 16 5 C -0.11 0.21 5.14 -25.30 -0.13 0.08 16 6 C -0.10 0.17 2.21 -88.76 -0.20 -0.03 16 7 C 0.13 0.06 5.06 -4.04 -0.02 0.04 16 8 N -0.72 -0.46 5.33 -61.50 -0.33 -0.78 16 9 C 0.57 2.17 7.79 -12.69 -0.10 2.07 16 10 O -0.52 -3.73 14.91 5.22 0.08 -3.65 16 11 C -0.16 -0.41 5.98 -104.59 -0.63 -1.04 16 12 C -0.11 -0.36 6.87 30.01 0.21 -0.15 16 13 Cl 0.03 0.12 27.20 -51.86 -1.41 -1.29 16 14 S 0.23 0.23 20.19 -107.50 -2.17 -1.94 16 15 C -0.19 -0.02 5.68 -36.20 -0.21 -0.22 16 16 C -0.04 0.09 2.93 36.00 0.11 0.19 16 17 O -0.54 1.00 12.85 -35.23 -0.45 0.54 16 18 Si 0.88 -1.68 26.20 -169.99 -4.45 -6.13 16 19 H -0.22 0.53 7.11 56.52 0.40 0.93 16 20 H -0.23 0.10 7.11 56.52 0.40 0.50 16 21 H -0.23 0.30 7.11 56.52 0.40 0.71 16 22 C -0.07 -0.01 9.75 -39.00 -0.38 -0.39 16 23 C -0.39 0.82 5.28 38.71 0.20 1.02 16 24 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.08 -0.19 8.04 -51.93 -0.42 -0.60 16 31 H 0.08 -0.16 8.05 -51.92 -0.42 -0.58 16 32 H 0.06 -0.14 7.46 -51.93 -0.39 -0.53 16 33 H 0.07 -0.08 8.06 -51.93 -0.42 -0.50 16 34 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 35 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.07 0.10 8.10 -51.93 -0.42 -0.32 16 37 H 0.40 -0.76 6.28 -40.82 -0.26 -1.01 16 38 H 0.09 -0.40 7.96 -51.93 -0.41 -0.82 16 39 H 0.39 -2.41 8.74 45.56 0.40 -2.02 16 40 H 0.16 -0.38 7.10 -52.49 -0.37 -0.76 16 41 H 0.08 -0.15 8.03 -51.93 -0.42 -0.56 16 42 H 0.08 -0.17 8.06 -51.93 -0.42 -0.59 16 LS Contribution 371.16 15.07 5.59 5.59 Total: 0.00 -6.90 371.16 -10.25 -17.14 By element: Atomic # 1 Polarization: -4.67 SS G_CDS: -5.66 Total: -10.33 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 0.83 Total: 6.26 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -0.33 Total: -0.78 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: -0.37 Total: -3.11 kcal Atomic # 14 Polarization: -4.81 SS G_CDS: -6.73 Total: -11.54 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.17 Total: -1.94 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -1.41 Total: -1.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -6.90 -10.25 -17.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.920 kcal (2) G-P(sol) polarization free energy of solvation -6.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds