Wall clock time and date at job start Sun Mar 7 2021 10:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86302 * 111.24214 * 2 1 4 4 C 1.89334 * 111.45770 * 125.06511 * 2 1 3 5 5 C 1.55151 * 101.34526 * 120.85483 * 4 2 1 6 6 C 1.53563 * 111.29286 * 331.40849 * 5 4 2 7 7 C 1.53000 * 109.47513 * 169.06287 * 6 5 4 8 8 N 1.46502 * 109.46956 * 66.45445 * 7 6 5 9 9 C 1.34779 * 119.99932 * 180.02562 * 8 7 6 10 10 O 1.21607 * 119.99909 * 0.02562 * 9 8 7 11 11 C 1.47375 * 119.99717 * 180.02562 * 9 8 7 12 12 C 1.36411 * 127.19550 * 359.96234 * 11 9 8 13 13 O 1.33658 * 108.40014 * 180.02562 * 12 11 9 14 14 C 1.34209 * 110.90640 * 359.97438 * 13 12 11 15 15 C 1.50699 * 125.43708 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47000 * 245.03822 * 15 14 13 17 17 Si 1.86300 * 109.47176 * 5.03644 * 15 14 13 18 18 H 1.48502 * 109.46829 * 60.00482 * 17 15 14 19 19 H 1.48503 * 109.47057 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47131 * 300.00162 * 17 15 14 21 21 C 1.34184 * 109.12515 * 359.97438 * 14 13 12 22 22 C 1.55919 * 109.50520 * 49.04257 * 6 5 4 23 23 H 1.09004 * 109.46745 * 294.93301 * 1 2 3 24 24 H 1.09002 * 109.46828 * 54.93436 * 1 2 3 25 25 H 1.08994 * 109.47022 * 174.93653 * 1 2 3 26 26 H 1.09000 * 109.47006 * 185.07215 * 3 2 1 27 27 H 1.09000 * 109.46615 * 305.06534 * 3 2 1 28 28 H 1.08999 * 109.47345 * 65.06327 * 3 2 1 29 29 H 1.09005 * 111.04862 * 2.83549 * 4 2 1 30 30 H 1.09004 * 111.08095 * 238.88343 * 4 2 1 31 31 H 1.09005 * 109.11741 * 210.92478 * 5 4 2 32 32 H 1.08999 * 109.12483 * 91.90148 * 5 4 2 33 33 H 1.08998 * 109.47492 * 289.06348 * 6 5 4 34 34 H 1.08999 * 109.46945 * 306.45470 * 7 6 5 35 35 H 1.08996 * 109.47682 * 186.45472 * 7 6 5 36 36 H 0.97000 * 119.99846 * 0.02562 * 8 7 6 37 37 H 1.08001 * 125.80413 * 0.04634 * 12 11 9 38 38 H 1.09005 * 109.47167 * 125.04230 * 15 14 13 39 39 H 0.96699 * 113.99982 * 59.99998 * 16 15 14 40 40 H 1.07999 * 127.02209 * 179.73888 * 21 14 13 41 41 H 1.08998 * 111.42909 * 76.90594 * 22 6 5 42 42 H 1.09007 * 111.42647 * 201.85400 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0123 1.4423 5 6 3.3934 -2.0805 0.6909 6 6 2.8148 -2.3637 -0.7030 7 6 3.8086 -3.2049 -1.5065 8 7 3.9329 -4.5303 -0.8950 9 6 4.7596 -5.4472 -1.4359 10 8 5.4027 -5.1739 -2.4312 11 6 4.8842 -6.7807 -0.8210 12 6 4.2379 -7.2408 0.2886 13 8 4.6290 -8.4990 0.5134 14 6 5.5169 -8.8969 -0.4110 15 6 6.1697 -10.2539 -0.4684 16 8 7.5754 -10.1158 -0.2513 17 14 5.4422 -11.3493 0.8512 18 1 3.9815 -11.4929 0.6255 19 1 6.0860 -12.6864 0.7950 20 1 5.6797 -10.7418 2.1852 21 6 5.7305 -7.8935 -1.2760 22 6 2.5568 -1.0160 -1.4434 23 1 -0.3633 0.4332 0.9319 24 1 -0.3633 0.5904 -0.8412 25 1 -0.3633 -1.0236 -0.0907 26 1 3.6237 1.7042 -0.0909 27 1 2.1193 2.2889 -0.8412 28 1 2.2658 2.2321 0.9318 29 1 1.7532 -1.4764 2.0158 30 1 3.1882 -0.3988 2.0838 31 1 3.3972 -3.0037 1.2705 32 1 4.4176 -1.7225 0.5866 33 1 1.8757 -2.9080 -0.6030 34 1 4.7815 -2.7134 -1.5095 35 1 3.4513 -3.3094 -2.5310 36 1 3.4202 -4.7481 -0.1009 37 1 3.5300 -6.6834 0.8842 38 1 5.9954 -10.6998 -1.4477 39 1 7.8049 -9.7247 0.6027 40 1 6.3931 -7.9001 -2.1288 41 1 3.4839 -0.5865 -1.8232 42 1 1.8202 -1.1329 -2.2383 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:10:16 Heat of formation + Delta-G solvation = -104.164525 kcal Electronic energy + Delta-G solvation = -21511.420717 eV Core-core repulsion = 18195.123838 eV Total energy + Delta-G solvation = -3316.296879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.74539 -40.65121 -37.99404 -37.85538 -34.85438 -33.87001 -31.89283 -30.36923 -29.09715 -28.36802 -27.43492 -26.45218 -24.53629 -23.78284 -22.32483 -21.17841 -20.52311 -19.33274 -17.93583 -17.56048 -17.38367 -17.04318 -16.46639 -16.24224 -15.83735 -15.59041 -15.10295 -14.77117 -14.59706 -14.40410 -14.05353 -13.84221 -13.80228 -13.69681 -13.62874 -13.40471 -13.23117 -13.12889 -12.84169 -12.52809 -12.18996 -12.16943 -12.04080 -11.86409 -11.38196 -11.32971 -10.98174 -10.74945 -10.60319 -10.38141 -10.30411 -10.14710 -9.79939 0.23287 0.81180 1.06896 1.45203 1.50968 1.75383 1.78428 1.93177 2.01405 2.06461 2.11057 2.22961 2.66762 3.31213 3.48960 3.59426 3.81572 3.95796 4.04466 4.10102 4.35473 4.46334 4.51312 4.53096 4.62431 4.66025 4.79089 4.81597 4.83027 4.84663 4.87181 4.87633 4.90912 5.12503 5.14083 5.25002 5.29940 5.38329 5.53458 5.57385 5.62243 5.66120 5.81262 6.45208 6.56302 7.12312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.040 2.960 3 C -0.463 4.463 4 C -0.406 4.406 5 C -0.114 4.114 6 C -0.091 4.091 7 C 0.127 3.873 8 N -0.710 5.710 9 C 0.582 3.418 10 O -0.589 6.589 11 C -0.268 4.268 12 C 0.062 3.938 13 O -0.172 6.172 14 C -0.055 4.055 15 C -0.044 4.044 16 O -0.544 6.544 17 Si 1.004 2.996 18 H -0.259 1.259 19 H -0.260 1.260 20 H -0.255 1.255 21 C -0.148 4.148 22 C -0.408 4.408 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.415 0.585 37 H 0.261 0.739 38 H 0.146 0.854 39 H 0.394 0.606 40 H 0.148 0.852 41 H 0.076 0.924 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 0.706 5.877 7.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.233 2.767 3 C -0.570 4.570 4 C -0.492 4.492 5 C -0.152 4.152 6 C -0.109 4.109 7 C 0.004 3.996 8 N -0.362 5.362 9 C 0.371 3.629 10 O -0.470 6.470 11 C -0.272 4.272 12 C -0.008 4.008 13 O -0.068 6.068 14 C -0.104 4.104 15 C -0.153 4.153 16 O -0.351 6.351 17 Si 0.825 3.175 18 H -0.183 1.183 19 H -0.184 1.184 20 H -0.178 1.178 21 C -0.168 4.168 22 C -0.492 4.492 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.277 0.723 38 H 0.163 0.837 39 H 0.243 0.757 40 H 0.165 0.835 41 H 0.095 0.905 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.997 -0.026 5.447 7.392 hybrid contribution 0.344 0.768 -0.123 0.851 sum -4.653 0.742 5.324 7.109 Atomic orbital electron populations 1.26176 1.20938 1.04708 1.04438 0.79413 0.65872 0.65290 0.66120 1.26273 1.06580 1.19744 1.04356 1.26583 1.05309 1.06736 1.10527 1.21794 0.99448 0.99886 0.94047 1.21878 0.98417 0.96261 0.94382 1.21522 0.99735 0.81390 0.96943 1.45784 1.44768 1.13655 1.31978 1.17568 0.78851 0.83708 0.82738 1.90784 1.47606 1.80835 1.27821 1.21509 1.07423 0.96214 1.02100 1.25262 0.97753 0.81970 0.95834 1.83720 1.48316 1.28438 1.46338 1.22932 0.96738 0.99362 0.91335 1.24625 0.84557 0.92989 1.13177 1.86559 1.19611 1.85265 1.43664 0.84858 0.78802 0.77643 0.76159 1.18339 1.18368 1.17833 1.22584 1.01222 0.91601 1.01413 1.26970 1.06765 1.04253 1.11258 0.91095 0.91437 0.90783 0.91491 0.91417 0.91202 0.89748 0.90511 0.91035 0.92610 0.88574 0.92680 0.92547 0.74733 0.72335 0.83656 0.75653 0.83465 0.90547 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.72 8.65 113.37 0.98 3.70 16 2 Si 1.04 -8.21 13.36 68.60 0.92 -7.29 16 3 C -0.46 1.91 8.65 113.37 0.98 2.89 16 4 C -0.41 2.77 5.85 72.72 0.43 3.20 16 5 C -0.11 0.66 5.16 31.52 0.16 0.82 16 6 C -0.09 0.47 2.19 -9.59 -0.02 0.45 16 7 C 0.13 0.09 5.05 86.38 0.44 0.53 16 8 N -0.71 0.38 5.36 -466.42 -2.50 -2.11 16 9 C 0.58 4.48 7.81 86.65 0.68 5.16 16 10 O -0.59 -10.66 16.98 -4.05 -0.07 -10.73 16 11 C -0.27 -1.01 6.31 -18.99 -0.12 -1.13 16 12 C 0.06 -0.26 11.61 67.39 0.78 0.52 16 13 O -0.17 0.16 8.90 4.48 0.04 0.20 16 14 C -0.06 -0.08 6.18 24.76 0.15 0.07 16 15 C -0.04 0.08 2.97 71.24 0.21 0.29 16 16 O -0.54 0.11 12.88 -148.98 -1.92 -1.81 16 17 Si 1.00 -2.81 27.38 68.60 1.88 -0.93 16 18 H -0.26 0.23 7.11 99.48 0.71 0.94 16 19 H -0.26 0.15 7.11 99.48 0.71 0.85 16 20 H -0.25 0.49 7.11 99.48 0.71 1.20 16 21 C -0.15 -0.88 10.90 23.65 0.26 -0.62 16 22 C -0.41 2.03 5.29 72.99 0.39 2.42 16 23 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 24 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 25 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 26 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.08 -0.67 8.04 -2.38 -0.02 -0.69 16 30 H 0.08 -0.45 8.04 -2.38 -0.02 -0.47 16 31 H 0.07 -0.57 7.55 -2.38 -0.02 -0.59 16 32 H 0.06 -0.19 8.04 -2.39 -0.02 -0.20 16 33 H 0.10 -0.78 8.13 -2.39 -0.02 -0.80 16 34 H 0.05 0.23 8.07 -2.39 -0.02 0.21 16 35 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.42 -3.54 6.81 -92.71 -0.63 -4.17 16 37 H 0.26 -4.01 7.47 -2.91 -0.02 -4.04 16 38 H 0.15 -0.60 7.96 -2.38 -0.02 -0.62 16 39 H 0.39 -2.70 8.70 -74.06 -0.64 -3.34 16 40 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.08 -0.25 8.03 -2.39 -0.02 -0.27 16 42 H 0.08 -0.43 8.06 -2.38 -0.02 -0.45 16 Total: 0.00 -21.63 351.70 4.16 -17.48 By element: Atomic # 1 Polarization: -13.60 SS G_CDS: 0.50 Total: -13.11 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 5.31 Total: 18.30 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -2.50 Total: -2.11 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.95 Total: -12.34 kcal Atomic # 14 Polarization: -11.01 SS G_CDS: 2.79 Total: -8.22 kcal Total: -21.63 4.16 -17.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.687 kcal (2) G-P(sol) polarization free energy of solvation -21.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds