Wall clock time and date at job start Sun Mar 7 2021 10:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 111.29248 * 2 1 4 4 C 1.89522 * 111.50035 * 234.84343 * 2 1 3 5 5 C 1.55142 * 101.35640 * 245.87503 * 4 2 1 6 6 C 1.53579 * 111.29168 * 331.41615 * 5 4 2 7 7 C 1.52995 * 109.47126 * 169.06332 * 6 5 4 8 8 N 1.46499 * 109.47347 * 64.95551 * 7 6 5 9 9 C 1.34772 * 120.00390 * 179.97438 * 8 7 6 10 10 O 1.21630 * 119.99880 * 0.02562 * 9 8 7 11 11 C 1.47261 * 120.00432 * 180.02562 * 9 8 7 12 12 C 1.36337 * 126.97121 * 179.71523 * 11 9 8 13 13 C 1.51004 * 126.79050 * 0.71472 * 12 11 9 14 14 C 1.53394 * 108.31088 * 163.85340 * 13 12 11 15 15 C 1.53159 * 109.04171 * 48.25520 * 14 13 12 16 16 C 1.53138 * 109.52785 * 290.42991 * 15 14 13 17 17 N 1.35211 * 108.66015 * 179.85694 * 12 11 9 18 18 C 1.36423 * 109.90061 * 0.41397 * 17 12 11 19 19 C 1.50695 * 125.49684 * 179.78638 * 18 17 12 20 20 O 1.42907 * 109.47051 * 329.98014 * 19 18 17 21 21 Si 1.86299 * 109.47335 * 209.98199 * 19 18 17 22 22 H 1.48504 * 109.47020 * 59.99767 * 21 19 18 23 23 H 1.48504 * 109.47348 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47243 * 299.99993 * 21 19 18 25 25 C 1.34494 * 109.00983 * 359.74791 * 18 17 12 26 26 C 1.55915 * 109.50369 * 49.04142 * 6 5 4 27 27 H 1.08996 * 109.47140 * 294.89926 * 1 2 3 28 28 H 1.09003 * 109.46829 * 54.89548 * 1 2 3 29 29 H 1.08996 * 109.47108 * 174.89587 * 1 2 3 30 30 H 1.08994 * 109.47400 * 185.10569 * 3 2 1 31 31 H 1.09005 * 109.47314 * 305.10736 * 3 2 1 32 32 H 1.09006 * 109.47297 * 65.10365 * 3 2 1 33 33 H 1.08998 * 111.03441 * 127.85278 * 4 2 1 34 34 H 1.09008 * 111.08072 * 3.91071 * 4 2 1 35 35 H 1.09003 * 109.12430 * 210.93608 * 5 4 2 36 36 H 1.09003 * 109.12868 * 91.90331 * 5 4 2 37 37 H 1.08998 * 109.47087 * 289.01591 * 6 5 4 38 38 H 1.09005 * 109.47049 * 184.95682 * 7 6 5 39 39 H 1.08998 * 109.47561 * 304.95752 * 7 6 5 40 40 H 0.96999 * 119.99704 * 0.02562 * 8 7 6 41 41 H 1.09001 * 109.86239 * 44.03442 * 13 12 11 42 42 H 1.09000 * 109.48477 * 283.45170 * 13 12 11 43 43 H 1.08998 * 109.54089 * 288.38562 * 14 13 12 44 44 H 1.08995 * 109.54144 * 168.12427 * 14 13 12 45 45 H 1.08999 * 109.46390 * 170.40795 * 15 14 13 46 46 H 1.09003 * 109.45988 * 50.43986 * 15 14 13 47 47 H 1.08997 * 109.55652 * 291.13852 * 16 15 14 48 48 H 1.09004 * 109.65516 * 170.86226 * 16 15 14 49 49 H 1.08999 * 109.47485 * 89.97953 * 19 18 17 50 50 H 0.96698 * 114.00300 * 179.97438 * 20 19 18 51 51 H 1.08006 * 126.81362 * 180.02562 * 25 18 17 52 52 H 1.09002 * 111.42836 * 76.90973 * 26 6 5 53 53 H 1.09001 * 111.42626 * 201.79891 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5395 1.7358 0.0000 4 6 2.5576 -1.0154 -1.4417 5 6 3.2480 -2.1828 -0.6884 6 6 3.7201 -1.7450 0.7059 7 6 4.1423 -2.9756 1.5110 8 7 5.3118 -3.5936 0.8812 9 6 5.8623 -4.6992 1.4206 10 8 5.3879 -5.1842 2.4301 11 6 7.0382 -5.3201 0.7878 12 6 7.7077 -6.4294 1.2122 13 6 7.3811 -7.2763 2.4190 14 6 8.1204 -8.6135 2.2836 15 6 9.5835 -8.3413 1.9219 16 6 9.6647 -7.7969 0.4928 17 7 8.7250 -6.6747 0.3560 18 6 8.7410 -5.7306 -0.6287 19 6 9.7305 -5.6665 -1.7635 20 8 10.9788 -6.2174 -1.3386 21 14 9.9765 -3.8917 -2.2735 22 1 10.4946 -3.1125 -1.1203 23 1 10.9521 -3.8285 -3.3914 24 1 8.6794 -3.3192 -2.7150 25 6 7.7307 -4.8668 -0.4239 26 6 2.5568 -1.0151 1.4440 27 1 -0.3633 0.4327 0.9321 28 1 -0.3633 0.5910 -0.8408 29 1 -0.3633 -1.0235 -0.0914 30 1 3.6251 1.7027 -0.0914 31 1 2.1208 2.2890 -0.8407 32 1 2.2684 2.2315 0.9322 33 1 3.2819 -0.4364 -2.0148 34 1 1.7572 -1.3828 -2.0839 35 1 4.1078 -2.5218 -1.2664 36 1 2.5427 -3.0073 -0.5841 37 1 4.5687 -1.0682 0.6063 38 1 4.3936 -2.6755 2.5283 39 1 3.3218 -3.6926 1.5359 40 1 5.6904 -3.2066 0.0763 41 1 6.3067 -7.4534 2.4674 42 1 7.7109 -6.7638 3.3228 43 1 7.6553 -9.2092 1.4981 44 1 8.0729 -9.1537 3.2291 45 1 10.1531 -9.2681 1.9904 46 1 9.9983 -7.6082 2.6138 47 1 9.3989 -8.5838 -0.2130 48 1 10.6783 -7.4512 0.2892 49 1 9.3503 -6.2385 -2.6099 50 1 11.6647 -6.2092 -2.0201 51 1 7.4788 -4.0098 -1.0311 52 1 1.8198 -1.7228 1.8236 53 1 2.9319 -0.3711 2.2394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_16915396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:11:02 Heat of formation + Delta-G solvation = -88.221369 kcal Electronic energy + Delta-G solvation = -29471.158910 eV Core-core repulsion = 25658.433043 eV Total energy + Delta-G solvation = -3812.725867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62422 -40.05376 -38.02764 -37.62616 -36.83889 -34.32363 -33.38218 -31.20193 -30.60074 -29.41067 -29.20978 -28.50928 -27.08206 -26.20175 -24.50378 -24.13707 -23.25632 -21.60689 -20.99450 -20.65948 -19.35925 -18.60325 -18.03935 -16.96708 -16.67704 -16.46946 -16.24236 -16.08212 -15.56411 -15.50592 -15.09645 -15.03945 -14.87297 -14.79232 -14.42144 -14.33464 -13.97301 -13.94878 -13.91945 -13.84000 -13.61456 -13.50882 -13.33454 -13.25189 -13.13441 -12.90147 -12.57508 -12.49139 -12.20975 -12.13887 -12.04901 -11.96163 -11.84215 -11.75451 -11.68278 -11.41746 -10.88762 -10.73846 -10.65115 -10.40997 -10.31695 -9.79517 -9.41593 -8.86687 0.89042 1.00443 1.34530 1.40908 1.53200 1.60085 1.84665 1.86588 1.88967 1.99592 2.52846 2.67063 2.84292 3.04129 3.58069 3.61962 3.79605 3.84809 3.87220 3.88422 4.02240 4.13360 4.22757 4.34392 4.36485 4.46932 4.51932 4.54642 4.57041 4.64357 4.68624 4.71157 4.71676 4.72989 4.73544 4.76333 4.83089 4.86153 4.94740 4.97069 5.05548 5.10082 5.15424 5.16712 5.24811 5.28649 5.30602 5.41914 5.46582 5.51444 5.52006 5.75123 5.86050 6.19892 6.31893 6.39265 6.87143 7.64698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.442 4.442 2 Si 0.964 3.036 3 C -0.442 4.442 4 C -0.397 4.397 5 C -0.111 4.111 6 C -0.098 4.098 7 C 0.130 3.870 8 N -0.730 5.730 9 C 0.593 3.407 10 O -0.550 6.550 11 C -0.233 4.233 12 C 0.119 3.881 13 C -0.055 4.055 14 C -0.129 4.129 15 C -0.139 4.139 16 C 0.102 3.898 17 N -0.422 5.422 18 C 0.034 3.966 19 C -0.057 4.057 20 O -0.551 6.551 21 Si 0.966 3.034 22 H -0.246 1.246 23 H -0.254 1.254 24 H -0.247 1.247 25 C -0.177 4.177 26 C -0.389 4.389 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.384 0.616 51 H 0.147 0.853 52 H 0.082 0.918 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 0.382 -4.105 4.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.162 2.838 3 C -0.550 4.550 4 C -0.484 4.484 5 C -0.149 4.149 6 C -0.117 4.117 7 C 0.007 3.993 8 N -0.381 5.381 9 C 0.382 3.618 10 O -0.430 6.430 11 C -0.242 4.242 12 C 0.001 3.999 13 C -0.092 4.092 14 C -0.167 4.167 15 C -0.176 4.176 16 C -0.018 4.018 17 N -0.097 5.097 18 C -0.075 4.075 19 C -0.167 4.167 20 O -0.358 6.358 21 Si 0.786 3.214 22 H -0.169 1.169 23 H -0.178 1.178 24 H -0.170 1.170 25 C -0.202 4.202 26 C -0.476 4.476 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.233 0.767 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.130 0.870 49 H 0.097 0.903 50 H 0.233 0.767 51 H 0.164 0.836 52 H 0.101 0.899 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.083 0.579 -3.079 3.763 hybrid contribution 0.558 -0.318 -0.949 1.146 sum 2.642 0.261 -4.028 4.824 Atomic orbital electron populations 1.26013 1.20024 1.04582 1.04438 0.80570 0.67478 0.67547 0.68214 1.26018 1.06589 1.17931 1.04471 1.26512 1.05502 1.06310 1.10049 1.21768 1.00513 0.98423 0.94202 1.21872 0.98838 0.96300 0.94648 1.21417 0.87531 0.93827 0.96542 1.45839 1.32281 1.29146 1.30868 1.17299 0.81913 0.79523 0.83064 1.90760 1.63723 1.63343 1.25151 1.19791 1.02083 1.01488 1.00872 1.20381 0.89323 0.96426 0.93806 1.20507 1.02413 0.93010 0.93311 1.21731 0.94694 0.97379 1.02873 1.21934 0.98031 1.02341 0.95325 1.22272 0.94262 0.87207 0.98078 1.43812 1.23634 1.22161 1.20114 1.19490 1.00177 0.93692 0.94123 1.24465 0.84324 1.11487 0.96416 1.86391 1.21453 1.85002 1.42942 0.85486 0.81542 0.74026 0.80351 1.16875 1.17808 1.17021 1.21646 0.98157 1.01299 0.99065 1.26748 1.02841 1.07804 1.10194 0.91130 0.91258 0.91037 0.91106 0.91189 0.91149 0.90639 0.90412 0.92035 0.91642 0.90361 0.91449 0.91447 0.76726 0.88186 0.89416 0.91356 0.90254 0.89435 0.90691 0.90333 0.86982 0.90305 0.76745 0.83584 0.89882 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.63 8.65 101.05 0.87 1.50 16 2 Si 0.96 -2.54 13.37 -169.99 -2.27 -4.81 16 3 C -0.44 0.72 8.65 101.05 0.87 1.59 16 4 C -0.40 0.62 5.85 38.29 0.22 0.84 16 5 C -0.11 0.09 5.14 -25.30 -0.13 -0.04 16 6 C -0.10 0.07 2.21 -88.76 -0.20 -0.12 16 7 C 0.13 0.21 5.06 -4.04 -0.02 0.19 16 8 N -0.73 -1.60 5.35 -61.44 -0.33 -1.93 16 9 C 0.59 3.04 7.81 -12.60 -0.10 2.94 16 10 O -0.55 -4.43 15.34 5.25 0.08 -4.35 16 11 C -0.23 -0.99 6.28 -103.48 -0.65 -1.64 16 12 C 0.12 0.45 6.57 -81.64 -0.54 -0.09 16 13 C -0.05 -0.14 5.32 -27.53 -0.15 -0.28 16 14 C -0.13 0.00 5.98 -26.44 -0.16 -0.16 16 15 C -0.14 0.10 5.92 -26.58 -0.16 -0.05 16 16 C 0.10 0.01 6.22 -3.69 -0.02 -0.01 16 17 N -0.42 -1.04 3.11 -107.37 -0.33 -1.37 16 18 C 0.03 0.07 6.18 -81.88 -0.51 -0.44 16 19 C -0.06 0.06 2.99 36.00 0.11 0.17 16 20 O -0.55 0.91 9.97 -35.23 -0.35 0.56 16 21 Si 0.97 -1.29 26.55 -169.99 -4.51 -5.80 16 22 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 23 H -0.25 0.39 7.11 56.52 0.40 0.79 16 24 H -0.25 0.29 6.80 56.52 0.38 0.68 16 25 C -0.18 -0.40 9.09 -37.47 -0.34 -0.74 16 26 C -0.39 0.54 5.28 38.71 0.20 0.74 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.12 8.04 -51.93 -0.42 -0.54 16 34 H 0.08 -0.11 8.05 -51.92 -0.42 -0.53 16 35 H 0.06 -0.06 7.46 -51.93 -0.39 -0.45 16 36 H 0.06 -0.01 8.06 -51.93 -0.42 -0.43 16 37 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 38 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.17 8.10 -51.93 -0.42 -0.25 16 40 H 0.40 0.03 6.87 -40.82 -0.28 -0.25 16 41 H 0.10 0.36 7.40 -51.93 -0.38 -0.02 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.01 8.12 -51.93 -0.42 -0.41 16 44 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 45 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 46 H 0.07 0.00 8.11 -51.93 -0.42 -0.43 16 47 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 48 H 0.11 -0.01 5.93 -51.93 -0.31 -0.32 16 49 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 50 H 0.38 -2.29 8.74 45.56 0.40 -1.89 16 51 H 0.15 -0.02 6.32 -52.48 -0.33 -0.35 16 52 H 0.08 -0.09 8.03 -51.93 -0.42 -0.51 16 53 H 0.08 -0.12 8.06 -51.93 -0.42 -0.54 16 LS Contribution 409.78 15.07 6.18 6.18 Total: 0.00 -7.53 409.78 -11.11 -18.64 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: -8.89 Total: -11.51 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.68 Total: 4.40 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -0.66 Total: -3.30 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.27 Total: -3.79 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: -6.79 Total: -10.61 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -7.53 -11.11 -18.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_16915396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.584 kcal (2) G-P(sol) polarization free energy of solvation -7.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds