Wall clock time and date at job start Sun Mar 7 2021 10:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86290 * 111.24211 * 2 1 4 4 C 1.89330 * 111.45599 * 125.06961 * 2 1 3 5 5 C 1.55157 * 101.34848 * 120.85606 * 4 2 1 6 6 C 1.53574 * 111.28846 * 331.40935 * 5 4 2 7 7 C 1.52995 * 109.47281 * 169.06390 * 6 5 4 8 8 N 1.46505 * 109.46969 * 66.45300 * 7 6 5 9 9 C 1.34780 * 119.99649 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99930 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99511 * 180.02562 * 9 8 7 12 12 O 1.42904 * 109.46632 * 179.97438 * 11 9 8 13 13 C 1.35898 * 116.99778 * 180.02562 * 12 11 9 14 14 C 1.38709 * 120.05670 * 0.02562 * 13 12 11 15 15 C 1.38172 * 119.94642 * 179.97438 * 14 13 12 16 16 C 1.38245 * 120.05216 * 0.02562 * 15 14 13 17 17 C 1.38287 * 120.11339 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05449 * 359.95814 * 17 16 15 19 19 C 1.50699 * 120.02386 * 180.02562 * 18 17 16 20 20 O 1.42908 * 109.46578 * 105.00275 * 19 18 17 21 21 Si 1.86299 * 109.47641 * 345.00496 * 19 18 17 22 22 H 1.48493 * 109.47272 * 59.99350 * 21 19 18 23 23 H 1.48491 * 109.47277 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46832 * 299.99713 * 21 19 18 25 25 C 1.55912 * 109.50759 * 49.03636 * 6 5 4 26 26 H 1.08999 * 109.47401 * 294.93312 * 1 2 3 27 27 H 1.09005 * 109.47106 * 54.93357 * 1 2 3 28 28 H 1.08997 * 109.47493 * 174.92873 * 1 2 3 29 29 H 1.09005 * 109.47693 * 185.06626 * 3 2 1 30 30 H 1.09005 * 109.47634 * 305.06550 * 3 2 1 31 31 H 1.09003 * 109.47380 * 65.06810 * 3 2 1 32 32 H 1.08992 * 111.05319 * 2.83509 * 4 2 1 33 33 H 1.09003 * 111.07974 * 238.88236 * 4 2 1 34 34 H 1.09003 * 109.11873 * 210.92780 * 5 4 2 35 35 H 1.08999 * 109.12669 * 91.89014 * 5 4 2 36 36 H 1.08996 * 109.47176 * 289.06165 * 6 5 4 37 37 H 1.09005 * 109.47183 * 306.45449 * 7 6 5 38 38 H 1.08999 * 109.47143 * 186.45264 * 7 6 5 39 39 H 0.97000 * 120.00186 * 359.97438 * 8 7 6 40 40 H 1.09003 * 109.47415 * 60.00370 * 11 9 8 41 41 H 1.08999 * 109.47205 * 299.99732 * 11 9 8 42 42 H 1.08002 * 120.02844 * 359.97438 * 14 13 12 43 43 H 1.08002 * 119.97210 * 180.29681 * 15 14 13 44 44 H 1.07997 * 119.93864 * 179.97438 * 16 15 14 45 45 H 1.07998 * 119.97064 * 179.97438 * 17 16 15 46 46 H 1.09005 * 109.47377 * 224.99882 * 19 18 17 47 47 H 0.96701 * 113.99696 * 299.99515 * 20 19 18 48 48 H 1.09003 * 111.42513 * 76.90728 * 25 6 5 49 49 H 1.08992 * 111.42867 * 201.84737 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5379 1.7363 0.0000 4 6 2.5555 -1.0124 1.4422 5 6 3.3934 -2.0806 0.6908 6 6 2.8147 -2.3637 -0.7033 7 6 3.8086 -3.2048 -1.5068 8 7 3.9328 -4.5304 -0.8953 9 6 4.7596 -5.4471 -1.4362 10 8 5.4002 -5.1749 -2.4293 11 6 4.8869 -6.8108 -0.8076 12 8 5.8153 -7.5964 -1.5580 13 6 6.0461 -8.8626 -1.1218 14 6 5.3923 -9.3393 0.0048 15 6 5.6283 -10.6272 0.4460 16 6 6.5157 -11.4403 -0.2342 17 6 7.1696 -10.9671 -1.3570 18 6 6.9368 -9.6805 -1.8022 19 6 7.6493 -9.1656 -3.0263 20 8 6.7395 -9.1314 -4.1278 21 14 9.0761 -10.2919 -3.4342 22 1 8.5661 -11.6614 -3.6976 23 1 9.7778 -9.7849 -4.6406 24 1 10.0215 -10.3275 -2.2894 25 6 2.5567 -1.0160 -1.4434 26 1 -0.3634 0.4332 0.9319 27 1 -0.3633 0.5904 -0.8412 28 1 -0.3634 -1.0236 -0.0908 29 1 3.6237 1.7042 -0.0908 30 1 2.1193 2.2890 -0.8412 31 1 2.2658 2.2320 0.9319 32 1 1.7532 -1.4765 2.0157 33 1 3.1881 -0.3990 2.0838 34 1 3.3971 -3.0038 1.2703 35 1 4.4175 -1.7225 0.5864 36 1 1.8757 -2.9080 -0.6032 37 1 4.7815 -2.7134 -1.5096 38 1 3.4512 -3.3093 -2.5312 39 1 3.4206 -4.7479 -0.1008 40 1 3.9140 -7.3023 -0.8056 41 1 5.2435 -6.7067 0.2171 42 1 4.6993 -8.7043 0.5367 43 1 5.1159 -11.0004 1.3204 44 1 6.6991 -12.4466 0.1126 45 1 7.8626 -11.6041 -1.8863 46 1 8.0237 -8.1603 -2.8329 47 1 6.3662 -9.9937 -4.3565 48 1 3.4838 -0.5865 -1.8233 49 1 1.8202 -1.1329 -2.2383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:11:12 Heat of formation + Delta-G solvation = -127.918533 kcal Electronic energy + Delta-G solvation = -26575.002611 eV Core-core repulsion = 22818.374302 eV Total energy + Delta-G solvation = -3756.628308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55149 -40.52957 -38.60300 -37.74192 -37.34490 -34.69315 -32.72929 -31.43610 -30.73323 -29.46397 -29.25498 -28.57028 -26.63426 -26.53552 -24.18733 -23.44975 -22.57783 -21.54144 -20.86511 -19.46935 -18.34031 -17.89959 -17.47369 -17.07289 -16.95663 -16.57657 -16.17240 -15.88461 -15.75418 -15.41100 -15.09139 -15.03488 -14.65640 -14.52955 -14.46278 -14.03629 -13.99293 -13.85121 -13.72055 -13.61405 -13.50327 -13.37261 -13.21364 -13.00370 -12.70738 -12.53928 -12.35192 -12.18554 -12.02501 -11.98783 -11.81691 -11.56409 -11.52999 -10.95932 -10.90944 -10.53918 -10.45972 -10.21321 -10.08832 -9.99171 -9.19481 0.21210 0.41138 1.25195 1.45496 1.48022 1.58784 1.59339 1.60436 1.77990 1.81256 1.99967 2.45536 2.63684 2.68791 3.51087 3.61154 3.70874 3.79212 3.80224 3.88598 3.90813 3.93708 3.97940 4.03137 4.27183 4.33587 4.40316 4.42719 4.49240 4.52336 4.62447 4.64431 4.66622 4.67608 4.70624 4.72567 4.87148 4.96106 4.99418 5.04669 5.16473 5.26543 5.28042 5.31493 5.34558 5.38315 5.44728 5.45656 5.47852 5.69102 6.27785 6.44122 6.76374 7.18334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.968 3.032 3 C -0.444 4.444 4 C -0.399 4.399 5 C -0.112 4.112 6 C -0.098 4.098 7 C 0.129 3.871 8 N -0.729 5.729 9 C 0.513 3.487 10 O -0.508 6.508 11 C 0.039 3.961 12 O -0.276 6.276 13 C 0.154 3.846 14 C -0.212 4.212 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.089 4.089 18 C -0.149 4.149 19 C -0.071 4.071 20 O -0.530 6.530 21 Si 0.950 3.050 22 H -0.253 1.253 23 H -0.252 1.252 24 H -0.250 1.250 25 C -0.391 4.391 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.118 0.882 47 H 0.370 0.630 48 H 0.083 0.917 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 -0.180 5.262 6.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.552 4.552 4 C -0.485 4.485 5 C -0.149 4.149 6 C -0.116 4.116 7 C 0.006 3.994 8 N -0.384 5.384 9 C 0.297 3.703 10 O -0.382 6.382 11 C -0.040 4.040 12 O -0.188 6.188 13 C 0.108 3.892 14 C -0.231 4.231 15 C -0.091 4.091 16 C -0.169 4.169 17 C -0.106 4.106 18 C -0.150 4.150 19 C -0.182 4.182 20 O -0.334 6.334 21 Si 0.773 3.227 22 H -0.177 1.177 23 H -0.176 1.176 24 H -0.173 1.173 25 C -0.477 4.477 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.135 0.865 47 H 0.216 0.784 48 H 0.102 0.898 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.360 0.264 4.157 4.787 hybrid contribution -0.963 -0.571 0.921 1.449 sum -3.322 -0.306 5.078 6.076 Atomic orbital electron populations 1.26027 1.19988 1.04543 1.04543 0.80498 0.67503 0.67484 0.67905 1.26028 1.06673 1.17986 1.04489 1.26501 1.05162 1.06677 1.10189 1.21780 0.99889 0.99168 0.94107 1.21884 0.98570 0.96518 0.94658 1.21521 0.99874 0.80973 0.97020 1.45911 1.46005 1.14272 1.32204 1.20007 0.80062 0.85503 0.84694 1.90804 1.43641 1.79325 1.24393 1.22486 0.94789 0.90701 0.96057 1.86244 1.59341 1.21770 1.51409 1.18770 0.94177 0.83846 0.92391 1.21303 1.04673 0.98429 0.98685 1.21018 0.96359 0.92873 0.98829 1.21046 0.98766 1.00597 0.96517 1.21013 0.98980 0.93949 0.96701 1.19676 1.01160 0.94047 1.00078 1.24864 0.99383 1.09074 0.84834 1.86624 1.63084 1.34977 1.48697 0.85745 0.77467 0.77989 0.81521 1.17665 1.17620 1.17303 1.26766 1.06854 1.03802 1.10321 0.91115 0.91129 0.91120 0.91023 0.91126 0.91180 0.90554 0.90313 0.92092 0.91600 0.90211 0.91088 0.91042 0.76496 0.88905 0.88949 0.85239 0.85362 0.85363 0.85209 0.86465 0.78386 0.89796 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.08 8.65 101.05 0.87 1.95 16 2 Si 0.97 -3.48 13.36 -169.99 -2.27 -5.75 16 3 C -0.44 0.93 8.65 101.05 0.87 1.81 16 4 C -0.40 1.09 5.85 38.30 0.22 1.32 16 5 C -0.11 0.28 5.17 -25.29 -0.13 0.15 16 6 C -0.10 0.23 2.19 -88.77 -0.19 0.04 16 7 C 0.13 -0.04 5.05 -4.04 -0.02 -0.06 16 8 N -0.73 0.66 5.37 -60.29 -0.32 0.33 16 9 C 0.51 1.21 7.91 -10.98 -0.09 1.12 16 10 O -0.51 -3.86 16.50 -14.35 -0.24 -4.10 16 11 C 0.04 0.00 5.22 36.01 0.19 0.19 16 12 O -0.28 -1.05 9.00 -39.33 -0.35 -1.40 16 13 C 0.15 0.39 6.66 -39.22 -0.26 0.13 16 14 C -0.21 -0.06 9.04 -39.43 -0.36 -0.42 16 15 C -0.07 0.02 10.04 -39.60 -0.40 -0.38 16 16 C -0.15 0.00 10.04 -39.56 -0.40 -0.40 16 17 C -0.09 -0.08 8.66 -39.61 -0.34 -0.42 16 18 C -0.15 -0.34 5.27 -104.47 -0.55 -0.89 16 19 C -0.07 -0.17 2.38 36.01 0.09 -0.09 16 20 O -0.53 -1.84 12.88 -35.23 -0.45 -2.30 16 21 Si 0.95 0.86 25.49 -169.99 -4.33 -3.47 16 22 H -0.25 -0.05 6.73 56.52 0.38 0.33 16 23 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 24 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 25 C -0.39 0.98 5.29 38.71 0.20 1.19 16 26 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.08 -0.21 8.04 -51.93 -0.42 -0.63 16 33 H 0.08 -0.19 8.04 -51.93 -0.42 -0.61 16 34 H 0.06 -0.18 7.55 -51.93 -0.39 -0.58 16 35 H 0.07 -0.12 8.04 -51.93 -0.42 -0.53 16 36 H 0.08 -0.25 8.13 -51.93 -0.42 -0.68 16 37 H 0.07 0.06 8.07 -51.93 -0.42 -0.36 16 38 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.40 -1.62 7.84 -40.82 -0.32 -1.94 16 40 H 0.09 -0.23 7.66 -51.93 -0.40 -0.63 16 41 H 0.09 -0.25 7.66 -51.93 -0.40 -0.65 16 42 H 0.13 -0.30 6.30 -52.49 -0.33 -0.63 16 43 H 0.13 -0.32 8.06 -52.49 -0.42 -0.74 16 44 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 45 H 0.13 -0.08 4.89 -52.49 -0.26 -0.33 16 46 H 0.12 0.39 7.83 -51.93 -0.41 -0.01 16 47 H 0.37 -0.16 8.70 45.56 0.40 0.24 16 48 H 0.08 -0.18 8.03 -51.93 -0.42 -0.59 16 49 H 0.08 -0.21 8.06 -51.93 -0.42 -0.62 16 LS Contribution 396.48 15.07 5.97 5.97 Total: 0.00 -9.07 396.48 -9.89 -18.96 By element: Atomic # 1 Polarization: -5.88 SS G_CDS: -7.60 Total: -13.48 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.29 Total: 5.24 kcal Atomic # 7 Polarization: 0.66 SS G_CDS: -0.32 Total: 0.33 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -1.04 Total: -7.80 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: -6.60 Total: -9.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -9.07 -9.89 -18.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.962 kcal (2) G-P(sol) polarization free energy of solvation -9.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds