Wall clock time and date at job start Sun Mar 7 2021 10:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86290 * 111.24211 * 2 1 4 4 C 1.89330 * 111.45599 * 125.06961 * 2 1 3 5 5 C 1.55157 * 101.34848 * 120.85606 * 4 2 1 6 6 C 1.53574 * 111.28846 * 331.40935 * 5 4 2 7 7 C 1.52995 * 109.47281 * 169.06390 * 6 5 4 8 8 N 1.46505 * 109.46969 * 66.45300 * 7 6 5 9 9 C 1.34780 * 119.99649 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99930 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99511 * 180.02562 * 9 8 7 12 12 O 1.42904 * 109.46632 * 179.97438 * 11 9 8 13 13 C 1.35898 * 116.99778 * 180.02562 * 12 11 9 14 14 C 1.38709 * 120.05670 * 0.02562 * 13 12 11 15 15 C 1.38172 * 119.94642 * 179.97438 * 14 13 12 16 16 C 1.38245 * 120.05216 * 0.02562 * 15 14 13 17 17 C 1.38287 * 120.11339 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05449 * 359.95814 * 17 16 15 19 19 C 1.50699 * 120.02386 * 180.02562 * 18 17 16 20 20 O 1.42908 * 109.46578 * 105.00275 * 19 18 17 21 21 Si 1.86299 * 109.47641 * 345.00496 * 19 18 17 22 22 H 1.48493 * 109.47272 * 59.99350 * 21 19 18 23 23 H 1.48491 * 109.47277 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46832 * 299.99713 * 21 19 18 25 25 C 1.55912 * 109.50759 * 49.03636 * 6 5 4 26 26 H 1.08999 * 109.47401 * 294.93312 * 1 2 3 27 27 H 1.09005 * 109.47106 * 54.93357 * 1 2 3 28 28 H 1.08997 * 109.47493 * 174.92873 * 1 2 3 29 29 H 1.09005 * 109.47693 * 185.06626 * 3 2 1 30 30 H 1.09005 * 109.47634 * 305.06550 * 3 2 1 31 31 H 1.09003 * 109.47380 * 65.06810 * 3 2 1 32 32 H 1.08992 * 111.05319 * 2.83509 * 4 2 1 33 33 H 1.09003 * 111.07974 * 238.88236 * 4 2 1 34 34 H 1.09003 * 109.11873 * 210.92780 * 5 4 2 35 35 H 1.08999 * 109.12669 * 91.89014 * 5 4 2 36 36 H 1.08996 * 109.47176 * 289.06165 * 6 5 4 37 37 H 1.09005 * 109.47183 * 306.45449 * 7 6 5 38 38 H 1.08999 * 109.47143 * 186.45264 * 7 6 5 39 39 H 0.97000 * 120.00186 * 359.97438 * 8 7 6 40 40 H 1.09003 * 109.47415 * 60.00370 * 11 9 8 41 41 H 1.08999 * 109.47205 * 299.99732 * 11 9 8 42 42 H 1.08002 * 120.02844 * 359.97438 * 14 13 12 43 43 H 1.08002 * 119.97210 * 180.29681 * 15 14 13 44 44 H 1.07997 * 119.93864 * 179.97438 * 16 15 14 45 45 H 1.07998 * 119.97064 * 179.97438 * 17 16 15 46 46 H 1.09005 * 109.47377 * 224.99882 * 19 18 17 47 47 H 0.96701 * 113.99696 * 299.99515 * 20 19 18 48 48 H 1.09003 * 111.42513 * 76.90728 * 25 6 5 49 49 H 1.08992 * 111.42867 * 201.84737 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5379 1.7363 0.0000 4 6 2.5555 -1.0124 1.4422 5 6 3.3934 -2.0806 0.6908 6 6 2.8147 -2.3637 -0.7033 7 6 3.8086 -3.2048 -1.5068 8 7 3.9328 -4.5304 -0.8953 9 6 4.7596 -5.4471 -1.4362 10 8 5.4002 -5.1749 -2.4293 11 6 4.8869 -6.8108 -0.8076 12 8 5.8153 -7.5964 -1.5580 13 6 6.0461 -8.8626 -1.1218 14 6 5.3923 -9.3393 0.0048 15 6 5.6283 -10.6272 0.4460 16 6 6.5157 -11.4403 -0.2342 17 6 7.1696 -10.9671 -1.3570 18 6 6.9368 -9.6805 -1.8022 19 6 7.6493 -9.1656 -3.0263 20 8 6.7395 -9.1314 -4.1278 21 14 9.0761 -10.2919 -3.4342 22 1 8.5661 -11.6614 -3.6976 23 1 9.7778 -9.7849 -4.6406 24 1 10.0215 -10.3275 -2.2894 25 6 2.5567 -1.0160 -1.4434 26 1 -0.3634 0.4332 0.9319 27 1 -0.3633 0.5904 -0.8412 28 1 -0.3634 -1.0236 -0.0908 29 1 3.6237 1.7042 -0.0908 30 1 2.1193 2.2890 -0.8412 31 1 2.2658 2.2320 0.9319 32 1 1.7532 -1.4765 2.0157 33 1 3.1881 -0.3990 2.0838 34 1 3.3971 -3.0038 1.2703 35 1 4.4175 -1.7225 0.5864 36 1 1.8757 -2.9080 -0.6032 37 1 4.7815 -2.7134 -1.5096 38 1 3.4512 -3.3093 -2.5312 39 1 3.4206 -4.7479 -0.1008 40 1 3.9140 -7.3023 -0.8056 41 1 5.2435 -6.7067 0.2171 42 1 4.6993 -8.7043 0.5367 43 1 5.1159 -11.0004 1.3204 44 1 6.6991 -12.4466 0.1126 45 1 7.8626 -11.6041 -1.8863 46 1 8.0237 -8.1603 -2.8329 47 1 6.3662 -9.9937 -4.3565 48 1 3.4838 -0.5865 -1.8233 49 1 1.8202 -1.1329 -2.2383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:11:11 Heat of formation + Delta-G solvation = -124.227085 kcal Electronic energy + Delta-G solvation = -26574.842538 eV Core-core repulsion = 22818.374302 eV Total energy + Delta-G solvation = -3756.468235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61311 -40.65110 -38.64398 -37.77657 -37.47597 -34.75783 -32.75365 -31.42234 -30.64319 -29.40093 -29.07760 -28.37057 -26.69436 -26.49665 -24.04425 -23.44801 -22.61497 -21.63923 -20.73134 -19.51437 -18.40086 -18.02242 -17.52479 -17.14304 -16.98208 -16.60308 -16.13665 -15.95363 -15.79815 -15.44603 -15.11579 -15.02317 -14.61192 -14.57255 -14.47874 -13.85597 -13.81221 -13.79463 -13.74047 -13.44187 -13.43710 -13.23012 -13.12767 -13.01943 -12.55117 -12.51970 -12.23631 -12.19433 -12.07722 -11.86939 -11.84867 -11.63290 -11.38471 -11.09642 -10.75591 -10.38160 -10.35181 -10.31292 -10.14528 -9.97915 -9.22043 0.22294 0.40531 1.14141 1.39624 1.43221 1.49373 1.50590 1.78701 1.88709 2.01408 2.06224 2.60860 2.67511 2.69845 3.52376 3.56578 3.76061 3.82268 3.87597 3.96616 4.02303 4.06063 4.09981 4.12606 4.31076 4.36958 4.52179 4.53471 4.61737 4.64353 4.67110 4.78237 4.81017 4.82515 4.84180 4.86839 4.89080 4.97501 5.13148 5.24302 5.27549 5.28631 5.35584 5.37608 5.51212 5.52755 5.56541 5.61642 5.65470 5.74576 6.27815 6.46395 6.74493 7.11353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.041 2.959 3 C -0.463 4.463 4 C -0.406 4.406 5 C -0.114 4.114 6 C -0.090 4.090 7 C 0.128 3.872 8 N -0.709 5.709 9 C 0.508 3.492 10 O -0.573 6.573 11 C 0.037 3.963 12 O -0.311 6.311 13 C 0.131 3.869 14 C -0.211 4.211 15 C -0.075 4.075 16 C -0.155 4.155 17 C -0.097 4.097 18 C -0.169 4.169 19 C -0.081 4.081 20 O -0.554 6.554 21 Si 0.993 3.007 22 H -0.234 1.234 23 H -0.280 1.280 24 H -0.253 1.253 25 C -0.408 4.408 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.419 0.581 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.141 0.859 46 H 0.094 0.906 47 H 0.384 0.616 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -1.570 7.417 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.234 2.766 3 C -0.569 4.569 4 C -0.492 4.492 5 C -0.151 4.151 6 C -0.109 4.109 7 C 0.005 3.995 8 N -0.364 5.364 9 C 0.294 3.706 10 O -0.451 6.451 11 C -0.041 4.041 12 O -0.224 6.224 13 C 0.085 3.915 14 C -0.230 4.230 15 C -0.093 4.093 16 C -0.173 4.173 17 C -0.114 4.114 18 C -0.170 4.170 19 C -0.190 4.190 20 O -0.361 6.361 21 Si 0.815 3.185 22 H -0.157 1.157 23 H -0.205 1.205 24 H -0.177 1.177 25 C -0.493 4.493 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.257 0.743 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.173 0.827 43 H 0.172 0.828 44 H 0.167 0.833 45 H 0.159 0.841 46 H 0.112 0.888 47 H 0.233 0.767 48 H 0.094 0.906 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.778 -1.130 6.361 7.484 hybrid contribution -0.572 -0.075 0.264 0.635 sum -4.351 -1.204 6.625 8.017 Atomic orbital electron populations 1.26178 1.20946 1.04697 1.04454 0.79401 0.65865 0.65293 0.66065 1.26272 1.06579 1.19714 1.04374 1.26584 1.05316 1.06751 1.10536 1.21792 0.99437 0.99879 0.94026 1.21874 0.98426 0.96226 0.94378 1.21504 0.99677 0.81463 0.96881 1.45793 1.44934 1.13478 1.32223 1.20591 0.79342 0.86717 0.83911 1.90773 1.46395 1.80621 1.27351 1.22707 0.95817 0.88937 0.96616 1.86197 1.60531 1.22718 1.52943 1.19048 0.95208 0.83627 0.93609 1.21611 1.04451 0.99103 0.97820 1.21394 0.96013 0.92503 0.99370 1.21392 0.98303 1.01642 0.95983 1.21182 0.99466 0.93476 0.97324 1.19799 1.01913 0.94974 1.00276 1.25036 1.00255 1.08562 0.85147 1.86566 1.63673 1.36569 1.49278 0.85135 0.75679 0.77934 0.79716 1.15686 1.20548 1.17710 1.26976 1.06744 1.04315 1.11279 0.91071 0.91426 0.90811 0.91491 0.91410 0.91171 0.89810 0.90488 0.91034 0.92580 0.88603 0.92747 0.92709 0.74277 0.86078 0.85913 0.82669 0.82773 0.83286 0.84134 0.88805 0.76746 0.90590 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.57 8.65 113.37 0.98 3.55 16 2 Si 1.04 -7.85 13.36 68.60 0.92 -6.94 16 3 C -0.46 1.78 8.65 113.37 0.98 2.76 16 4 C -0.41 2.62 5.85 72.72 0.43 3.05 16 5 C -0.11 0.62 5.17 31.53 0.16 0.79 16 6 C -0.09 0.44 2.19 -9.59 -0.02 0.42 16 7 C 0.13 0.11 5.05 86.38 0.44 0.54 16 8 N -0.71 1.03 5.37 -463.05 -2.49 -1.45 16 9 C 0.51 3.07 7.91 87.66 0.69 3.77 16 10 O -0.57 -10.56 16.50 16.01 0.26 -10.30 16 11 C 0.04 0.00 5.22 71.24 0.37 0.37 16 12 O -0.31 -2.85 9.00 -73.36 -0.66 -3.51 16 13 C 0.13 0.74 6.66 22.51 0.15 0.89 16 14 C -0.21 0.16 9.04 22.37 0.20 0.36 16 15 C -0.07 0.20 10.04 22.26 0.22 0.42 16 16 C -0.16 0.23 10.04 22.28 0.22 0.45 16 17 C -0.10 -0.14 8.66 22.25 0.19 0.06 16 18 C -0.17 -0.95 5.27 -19.77 -0.10 -1.05 16 19 C -0.08 -0.58 2.38 71.24 0.17 -0.41 16 20 O -0.55 -5.20 12.88 -148.98 -1.92 -7.12 16 21 Si 0.99 2.68 25.49 68.60 1.75 4.43 16 22 H -0.23 0.13 6.73 99.48 0.67 0.80 16 23 H -0.28 -1.92 7.11 99.48 0.71 -1.21 16 24 H -0.25 -0.76 7.11 99.48 0.71 -0.06 16 25 C -0.41 1.85 5.29 72.99 0.39 2.24 16 26 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 27 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 28 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 30 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.08 -0.62 8.04 -2.39 -0.02 -0.64 16 33 H 0.08 -0.43 8.04 -2.39 -0.02 -0.45 16 34 H 0.07 -0.54 7.55 -2.39 -0.02 -0.56 16 35 H 0.06 -0.18 8.04 -2.39 -0.02 -0.20 16 36 H 0.10 -0.74 8.13 -2.39 -0.02 -0.76 16 37 H 0.05 0.23 8.07 -2.38 -0.02 0.21 16 38 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.42 -3.88 7.84 -92.71 -0.73 -4.60 16 40 H 0.12 -0.77 7.66 -2.39 -0.02 -0.78 16 41 H 0.12 -0.83 7.66 -2.39 -0.02 -0.85 16 42 H 0.16 -1.10 6.30 -2.91 -0.02 -1.12 16 43 H 0.15 -1.26 8.06 -2.91 -0.02 -1.28 16 44 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 45 H 0.14 -0.26 4.89 -2.91 -0.01 -0.27 16 46 H 0.09 1.00 7.83 -2.38 -0.02 0.98 16 47 H 0.38 0.35 8.70 -74.06 -0.64 -0.29 16 48 H 0.08 -0.21 8.03 -2.39 -0.02 -0.23 16 49 H 0.08 -0.38 8.06 -2.39 -0.02 -0.40 16 Total: 0.00 -24.70 396.48 3.63 -21.07 By element: Atomic # 1 Polarization: -14.67 SS G_CDS: 0.29 Total: -14.37 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 5.47 Total: 18.19 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.45 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -2.32 Total: -20.93 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: 2.67 Total: -2.51 kcal Total: -24.70 3.63 -21.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.156 kcal (2) G-P(sol) polarization free energy of solvation -24.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds