Wall clock time and date at job start Sun Mar 7 2021 10:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 O 1.42892 * 109.47300 * 180.02562 * 11 9 8 13 13 C 1.35901 * 117.00292 * 179.97438 * 12 11 9 14 14 C 1.38731 * 120.05309 * 359.72371 * 13 12 11 15 15 C 1.38146 * 119.94414 * 179.74447 * 14 13 12 16 16 C 1.38268 * 120.05438 * 0.50843 * 15 14 13 17 17 C 1.50702 * 119.94528 * 179.74597 * 16 15 14 18 18 O 1.42905 * 109.46858 * 245.02374 * 17 16 15 19 19 Si 1.86300 * 109.46882 * 5.01846 * 17 16 15 20 20 H 1.48503 * 109.46853 * 60.00296 * 19 17 16 21 21 H 1.48502 * 109.47153 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47368 * 300.00242 * 19 17 16 23 23 C 1.38266 * 120.11256 * 359.76771 * 16 15 14 24 24 C 1.38149 * 120.05331 * 359.97438 * 23 16 15 25 25 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 26 26 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 27 27 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 30 30 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 32 32 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 33 33 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 34 34 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 35 35 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 36 36 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 37 37 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 38 38 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 39 39 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 40 40 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 41 41 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 42 42 H 1.08005 * 120.02847 * 359.97438 * 14 13 12 43 43 H 1.08002 * 119.97364 * 180.23036 * 15 14 13 44 44 H 1.08995 * 109.46941 * 125.01899 * 17 16 15 45 45 H 0.96697 * 114.00459 * 60.00129 * 18 17 16 46 46 H 1.08001 * 119.97406 * 179.97438 * 23 16 15 47 47 H 1.08002 * 120.02625 * 179.97438 * 24 23 16 48 48 H 1.08995 * 111.07416 * 213.38000 * 25 6 5 49 49 H 1.08996 * 111.09205 * 89.35608 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 8 7.7464 -6.1874 -1.5935 13 6 8.3685 -7.3185 -1.1687 14 6 7.9071 -7.9840 -0.0423 15 6 8.5380 -9.1366 0.3845 16 6 9.6349 -9.6211 -0.3039 17 6 10.3248 -10.8754 0.1672 18 8 11.6521 -10.5583 0.5913 19 14 9.3755 -11.6079 1.5931 20 1 7.9962 -11.9373 1.1523 21 1 10.0556 -12.8436 2.0577 22 1 9.3184 -10.6265 2.7061 23 6 10.1002 -8.9565 -1.4235 24 6 9.4695 -7.8065 -1.8574 25 6 2.5556 -1.0124 -1.4423 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 2.1907 2.2612 0.8899 30 1 3.6274 1.7027 -0.0005 31 1 2.1908 2.2612 -0.8900 32 1 2.9328 -0.3695 2.2392 33 1 1.8196 -1.7209 1.8253 34 1 4.5681 -1.0679 0.6057 35 1 4.0203 -2.6213 1.2792 36 1 2.5392 -3.0050 -0.5833 37 1 4.1426 -2.8616 -2.5254 38 1 5.2196 -1.8841 -1.4992 39 1 4.5779 -4.2569 -0.1086 40 1 6.9283 -5.5405 0.1896 41 1 5.8519 -6.5175 -0.8376 42 1 7.0531 -7.6035 0.4984 43 1 8.1769 -9.6571 1.2592 44 1 10.3666 -11.5956 -0.6498 45 1 11.6913 -9.9212 1.3177 46 1 10.9575 -9.3366 -1.9592 47 1 9.8336 -7.2875 -2.7317 48 1 1.7543 -1.3787 -2.0838 49 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:11:22 Heat of formation + Delta-G solvation = -125.874747 kcal Electronic energy + Delta-G solvation = -25934.998710 eV Core-core repulsion = 22178.459027 eV Total energy + Delta-G solvation = -3756.539683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58005 -40.65412 -39.08323 -37.85739 -37.09641 -34.75515 -32.43915 -31.76712 -30.80603 -29.54617 -29.08571 -28.37398 -26.72168 -26.01707 -24.13378 -23.81650 -22.39936 -21.67951 -20.73637 -19.54189 -18.52007 -18.10572 -17.52093 -17.19446 -16.96614 -16.40264 -16.25746 -15.94986 -15.64701 -15.56451 -15.19502 -14.98729 -14.65128 -14.44990 -14.44015 -13.85137 -13.81867 -13.78574 -13.73757 -13.57360 -13.45762 -13.37553 -13.27073 -13.14175 -12.51716 -12.27406 -12.20044 -12.17317 -12.08914 -12.03743 -11.84740 -11.56184 -11.40724 -11.11888 -10.75853 -10.38507 -10.36293 -10.30187 -10.14160 -10.05719 -9.25059 0.25310 0.28891 1.21266 1.41167 1.46951 1.47872 1.54754 1.79603 1.94597 2.02348 2.05415 2.59179 2.63881 2.67569 3.50205 3.58874 3.71047 3.81268 3.82849 3.93262 3.99451 4.02485 4.06088 4.12090 4.27276 4.41600 4.53401 4.57509 4.61211 4.66728 4.71322 4.78974 4.80717 4.82198 4.82941 4.86498 4.88699 4.94970 5.14058 5.14695 5.22516 5.22845 5.27247 5.37572 5.48449 5.52646 5.57286 5.62526 5.64760 5.68740 6.23791 6.43973 6.73877 7.09280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.039 2.961 3 C -0.463 4.463 4 C -0.403 4.403 5 C -0.118 4.118 6 C -0.086 4.086 7 C 0.125 3.875 8 N -0.709 5.709 9 C 0.509 3.491 10 O -0.576 6.576 11 C 0.037 3.963 12 O -0.320 6.320 13 C 0.119 3.881 14 C -0.202 4.202 15 C -0.089 4.089 16 C -0.160 4.160 17 C -0.078 4.078 18 O -0.555 6.555 19 Si 0.984 3.016 20 H -0.255 1.255 21 H -0.279 1.279 22 H -0.247 1.247 23 C -0.055 4.055 24 C -0.165 4.165 25 C -0.409 4.409 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.420 0.580 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.161 0.839 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.388 0.612 46 H 0.141 0.859 47 H 0.128 0.872 48 H 0.084 0.916 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 -0.197 6.429 8.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.232 2.768 3 C -0.569 4.569 4 C -0.489 4.489 5 C -0.156 4.156 6 C -0.105 4.105 7 C 0.002 3.998 8 N -0.363 5.363 9 C 0.295 3.705 10 O -0.455 6.455 11 C -0.041 4.041 12 O -0.233 6.233 13 C 0.074 3.926 14 C -0.220 4.220 15 C -0.107 4.107 16 C -0.161 4.161 17 C -0.188 4.188 18 O -0.362 6.362 19 Si 0.808 3.192 20 H -0.179 1.179 21 H -0.205 1.205 22 H -0.171 1.171 23 C -0.073 4.073 24 C -0.184 4.184 25 C -0.494 4.494 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.258 0.742 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.178 0.822 43 H 0.158 0.842 44 H 0.139 0.861 45 H 0.237 0.763 46 H 0.158 0.842 47 H 0.146 0.854 48 H 0.103 0.897 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.769 -0.448 5.766 8.169 hybrid contribution 0.101 0.545 0.016 0.555 sum -5.668 0.097 5.782 8.097 Atomic orbital electron populations 1.26199 1.21273 1.04638 1.04306 0.79419 0.65520 0.65515 0.66370 1.26275 1.06561 1.19752 1.04334 1.26722 1.03667 1.08410 1.10146 1.22008 0.98446 1.01067 0.94047 1.21715 0.95222 0.99376 0.94184 1.21590 0.95850 0.85325 0.97054 1.45802 1.30473 1.27696 1.32373 1.20585 0.80549 0.85546 0.83790 1.90761 1.60535 1.66585 1.27629 1.22740 0.89342 0.95323 0.96684 1.86130 1.43693 1.39954 1.53517 1.19231 0.93099 0.86161 0.94101 1.21454 1.04225 0.98327 0.97997 1.21091 0.94757 0.95547 0.99277 1.20382 0.98319 0.99483 0.97917 1.25020 0.88489 0.97138 1.08186 1.86488 1.25472 1.66938 1.57348 0.85209 0.78037 0.79033 0.76912 1.17900 1.20480 1.17060 1.20956 0.98393 0.92896 0.95074 1.20670 0.96542 0.98747 1.02413 1.26819 1.05480 1.05689 1.11371 0.91519 0.91240 0.90851 0.91215 0.91522 0.91471 0.90396 0.89699 0.92101 0.90712 0.88971 0.92674 0.92555 0.74207 0.85686 0.85709 0.82150 0.84152 0.86143 0.76268 0.84165 0.85369 0.89736 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.57 8.65 113.37 0.98 3.55 16 2 Si 1.04 -8.30 13.35 68.60 0.92 -7.38 16 3 C -0.46 1.90 8.65 113.37 0.98 2.88 16 4 C -0.40 2.95 5.95 72.99 0.43 3.38 16 5 C -0.12 0.79 5.01 31.80 0.16 0.95 16 6 C -0.09 0.51 2.37 -9.79 -0.02 0.49 16 7 C 0.13 -0.08 4.92 86.38 0.43 0.34 16 8 N -0.71 2.16 5.36 -463.06 -2.48 -0.32 16 9 C 0.51 2.06 7.91 87.66 0.69 2.76 16 10 O -0.58 -9.32 16.50 16.01 0.26 -9.05 16 11 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 12 O -0.32 -2.21 9.67 -73.40 -0.71 -2.92 16 13 C 0.12 0.51 6.69 22.51 0.15 0.66 16 14 C -0.20 0.25 9.04 22.37 0.20 0.45 16 15 C -0.09 0.11 8.66 22.26 0.19 0.30 16 16 C -0.16 -0.08 5.35 -19.85 -0.11 -0.18 16 17 C -0.08 0.11 2.80 71.24 0.20 0.31 16 18 O -0.56 -0.24 12.83 -148.98 -1.91 -2.15 16 19 Si 0.98 -2.57 25.13 68.60 1.72 -0.84 16 20 H -0.25 0.50 7.11 99.48 0.71 1.20 16 21 H -0.28 -0.44 7.11 99.48 0.71 0.27 16 22 H -0.25 0.89 7.04 99.48 0.70 1.59 16 23 C -0.06 -0.14 9.68 22.26 0.22 0.07 16 24 C -0.17 -0.84 9.99 22.37 0.22 -0.62 16 25 C -0.41 2.25 5.28 72.79 0.38 2.64 16 26 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 28 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 29 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 30 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 32 H 0.08 -0.51 8.06 -2.39 -0.02 -0.53 16 33 H 0.08 -0.69 8.06 -2.39 -0.02 -0.70 16 34 H 0.06 -0.30 8.05 -2.39 -0.02 -0.32 16 35 H 0.07 -0.65 7.54 -2.39 -0.02 -0.67 16 36 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 37 H 0.05 0.16 8.13 -2.38 -0.02 0.14 16 38 H 0.06 0.14 8.08 -2.39 -0.02 0.12 16 39 H 0.42 -4.50 7.83 -92.71 -0.73 -5.23 16 40 H 0.13 -1.09 7.65 -2.38 -0.02 -1.11 16 41 H 0.13 -1.08 7.68 -2.39 -0.02 -1.09 16 42 H 0.16 -1.32 6.30 -2.91 -0.02 -1.34 16 43 H 0.14 -0.72 4.86 -2.91 -0.01 -0.74 16 44 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 45 H 0.39 -2.34 8.70 -74.06 -0.64 -2.98 16 46 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 47 H 0.13 0.70 8.06 -2.91 -0.02 0.67 16 48 H 0.08 -0.49 8.04 -2.39 -0.02 -0.51 16 49 H 0.07 -0.28 7.85 -2.39 -0.02 -0.30 16 Total: 0.00 -22.51 397.06 3.61 -18.90 By element: Atomic # 1 Polarization: -14.81 SS G_CDS: 0.32 Total: -14.49 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 5.48 Total: 18.26 kcal Atomic # 7 Polarization: 2.16 SS G_CDS: -2.48 Total: -0.32 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -2.36 Total: -14.12 kcal Atomic # 14 Polarization: -10.87 SS G_CDS: 2.64 Total: -8.23 kcal Total: -22.51 3.61 -18.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.971 kcal (2) G-P(sol) polarization free energy of solvation -22.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds