Wall clock time and date at job start Sun Mar 7 2021 10:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47265 * 180.02562 * 11 9 8 13 13 O 1.42894 * 109.47191 * 179.97438 * 12 11 9 14 14 C 1.35905 * 117.00185 * 179.97438 * 13 12 11 15 15 C 1.38731 * 120.05360 * 359.72832 * 14 13 12 16 16 C 1.38142 * 119.94187 * 179.73790 * 15 14 13 17 17 C 1.38269 * 120.05569 * 0.51264 * 16 15 14 18 18 C 1.50703 * 119.94571 * 179.73768 * 17 16 15 19 19 O 1.42895 * 109.47648 * 245.02568 * 18 17 16 20 20 Si 1.86303 * 109.46819 * 5.02556 * 18 17 16 21 21 H 1.48499 * 109.47374 * 299.99797 * 20 18 17 22 22 H 1.48506 * 109.47248 * 59.99948 * 20 18 17 23 23 H 1.48504 * 109.47065 * 179.97438 * 20 18 17 24 24 C 1.38262 * 120.11336 * 359.76867 * 17 16 15 25 25 C 1.38145 * 120.05270 * 359.97106 * 24 17 16 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 38 38 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 39 39 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 40 40 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 41 41 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 42 42 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 43 43 H 1.08996 * 109.46906 * 299.99835 * 12 11 9 44 44 H 1.09006 * 109.47246 * 59.99724 * 12 11 9 45 45 H 1.08000 * 120.02837 * 359.97438 * 15 14 13 46 46 H 1.08004 * 119.97523 * 180.23360 * 16 15 14 47 47 H 1.08999 * 109.46663 * 125.02335 * 18 17 16 48 48 H 0.96698 * 114.00460 * 179.97438 * 19 18 17 49 49 H 1.08001 * 119.97614 * 179.97438 * 24 17 16 50 50 H 1.08005 * 120.03011 * 179.97438 * 25 24 17 51 51 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 52 52 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 6 7.8261 -6.2188 -1.6471 13 8 8.3525 -7.4120 -1.0630 14 6 9.4349 -7.9691 -1.6671 15 6 9.9756 -7.3827 -2.8021 16 6 11.0792 -7.9479 -3.4112 17 6 11.6383 -9.1031 -2.8967 18 6 12.8386 -9.7210 -3.5666 19 8 12.4841 -11.0014 -4.0927 20 14 13.4124 -8.6171 -4.9534 21 1 12.3187 -8.4591 -5.9453 22 1 13.7809 -7.2864 -4.4067 23 1 14.5956 -9.2256 -5.6131 24 6 11.0977 -9.6928 -1.7690 25 6 9.9975 -9.1285 -1.1531 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8196 -1.7209 1.8253 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5392 -3.0050 -0.5833 38 1 4.1426 -2.8616 -2.5254 39 1 5.2196 -1.8841 -1.4992 40 1 4.5779 -4.2569 -0.1086 41 1 6.9283 -5.5405 0.1896 42 1 5.8519 -6.5175 -0.8376 43 1 7.5174 -6.4215 -2.6726 44 1 8.5933 -5.4445 -1.6448 45 1 9.5365 -6.4828 -3.2070 46 1 11.5029 -7.4897 -4.2927 47 1 13.6414 -9.8369 -2.8385 48 1 13.2102 -11.4579 -4.5393 49 1 11.5360 -10.5954 -1.3693 50 1 9.5752 -9.5897 -0.2725 51 1 1.7543 -1.3787 -2.0838 52 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:11:32 Heat of formation + Delta-G solvation = -138.606946 kcal Electronic energy + Delta-G solvation = -27480.209285 eV Core-core repulsion = 23567.579873 eV Total energy + Delta-G solvation = -3912.629412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29205 -40.71356 -39.02414 -37.98058 -37.19128 -34.69443 -33.35890 -31.96478 -31.49060 -30.53145 -29.29893 -28.57423 -27.46687 -26.23628 -25.18601 -24.09906 -23.30582 -21.96518 -21.46086 -20.80350 -19.41607 -18.44966 -17.82528 -17.48374 -17.41657 -16.94168 -16.68713 -16.41374 -15.88195 -15.73797 -15.62794 -15.10072 -14.87183 -14.65472 -14.50464 -14.36905 -14.24099 -14.11021 -14.00828 -13.98255 -13.72273 -13.63551 -13.53278 -13.41783 -13.29676 -12.89819 -12.75939 -12.69247 -12.38158 -12.32672 -12.10049 -11.98833 -11.88460 -11.66123 -11.59522 -11.57083 -11.04767 -10.96017 -10.54848 -10.46383 -10.29063 -10.10369 -9.90981 -9.07334 0.40470 0.43892 1.18419 1.46020 1.50533 1.52696 1.57861 1.76968 1.77894 1.81033 1.93581 2.44748 2.55234 2.74422 3.48326 3.55096 3.66833 3.82496 3.85844 3.86323 3.91091 3.95781 3.98257 4.08306 4.31877 4.36319 4.41002 4.41514 4.42723 4.47775 4.50284 4.62229 4.62656 4.65245 4.65884 4.66354 4.69699 4.70190 4.82284 4.83689 4.94307 5.02562 5.05874 5.15010 5.26964 5.29740 5.34378 5.38251 5.40076 5.44332 5.45709 5.62066 5.81761 6.38048 6.45146 6.62219 7.14039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.967 3.033 3 C -0.443 4.443 4 C -0.398 4.398 5 C -0.115 4.115 6 C -0.094 4.094 7 C 0.124 3.876 8 N -0.729 5.729 9 C 0.518 3.482 10 O -0.540 6.540 11 C -0.142 4.142 12 C 0.074 3.926 13 O -0.316 6.316 14 C 0.137 3.863 15 C -0.201 4.201 16 C -0.082 4.082 17 C -0.114 4.114 18 C -0.076 4.076 19 O -0.545 6.545 20 Si 0.943 3.057 21 H -0.248 1.248 22 H -0.250 1.250 23 H -0.257 1.257 24 C -0.050 4.050 25 C -0.150 4.150 26 C -0.393 4.393 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.402 0.598 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.134 0.866 46 H 0.122 0.878 47 H 0.075 0.925 48 H 0.379 0.621 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.081 0.919 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 0.994 3.109 3.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.165 2.835 3 C -0.551 4.551 4 C -0.484 4.484 5 C -0.153 4.153 6 C -0.113 4.113 7 C 0.001 3.999 8 N -0.381 5.381 9 C 0.304 3.696 10 O -0.417 6.417 11 C -0.182 4.182 12 C -0.002 4.002 13 O -0.230 6.230 14 C 0.091 3.909 15 C -0.220 4.220 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.186 4.186 19 O -0.351 6.351 20 Si 0.766 3.234 21 H -0.172 1.172 22 H -0.173 1.173 23 H -0.181 1.181 24 C -0.068 4.068 25 C -0.169 4.169 26 C -0.479 4.479 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.152 0.848 46 H 0.140 0.860 47 H 0.093 0.907 48 H 0.226 0.774 49 H 0.151 0.849 50 H 0.152 0.848 51 H 0.100 0.900 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.855 2.033 2.126 3.477 hybrid contribution 0.241 -0.524 0.317 0.658 sum -1.614 1.509 2.442 3.293 Atomic orbital electron populations 1.26025 1.20029 1.04559 1.04502 0.80515 0.67353 0.67672 0.67951 1.26022 1.06637 1.17932 1.04534 1.26656 1.03664 1.08131 1.09945 1.21980 0.98448 1.00645 0.94203 1.21730 0.96168 0.98945 0.94451 1.21585 0.95374 0.85801 0.97151 1.46055 1.31721 1.28151 1.32207 1.20293 0.80104 0.85176 0.84008 1.90753 1.59375 1.65852 1.25671 1.21473 0.98656 0.96294 1.01739 1.22423 0.95314 0.85424 0.97042 1.85970 1.42820 1.40869 1.53314 1.18974 0.86993 0.93079 0.91809 1.21219 0.99742 1.03085 0.97942 1.20786 0.95169 0.95319 0.98694 1.19151 0.98494 0.96398 0.97427 1.24641 0.98171 0.91559 1.04236 1.86516 1.40713 1.30827 1.77051 0.85802 0.79927 0.79210 0.78473 1.17188 1.17345 1.18114 1.20798 0.93972 0.98301 0.93739 1.20485 0.98247 0.95508 1.02661 1.26631 1.05419 1.05321 1.10577 0.91178 0.91132 0.91083 0.91141 0.91078 0.91103 0.90338 0.90345 0.91471 0.91735 0.90388 0.91216 0.91214 0.76289 0.87497 0.87488 0.90892 0.90895 0.84813 0.86001 0.90694 0.77376 0.84851 0.84783 0.89995 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.02 8.65 101.05 0.87 1.90 16 2 Si 0.97 -3.42 13.35 -169.99 -2.27 -5.69 16 3 C -0.44 0.93 8.65 101.05 0.87 1.80 16 4 C -0.40 1.07 5.95 38.72 0.23 1.30 16 5 C -0.12 0.29 5.01 -24.87 -0.12 0.16 16 6 C -0.09 0.22 2.37 -89.07 -0.21 0.01 16 7 C 0.12 -0.07 4.92 -4.04 -0.02 -0.09 16 8 N -0.73 0.88 5.36 -60.29 -0.32 0.56 16 9 C 0.52 0.53 7.83 -10.99 -0.09 0.45 16 10 O -0.54 -2.79 15.98 5.56 0.09 -2.70 16 11 C -0.14 0.16 6.07 -27.88 -0.17 -0.01 16 12 C 0.07 0.08 4.03 37.16 0.15 0.23 16 13 O -0.32 -0.76 10.14 -19.44 -0.20 -0.96 16 14 C 0.14 0.41 6.69 -39.22 -0.26 0.15 16 15 C -0.20 -0.55 9.04 -39.43 -0.36 -0.91 16 16 C -0.08 -0.22 8.66 -39.61 -0.34 -0.56 16 17 C -0.11 -0.28 5.39 -104.60 -0.56 -0.84 16 18 C -0.08 -0.03 2.79 36.01 0.10 0.07 16 19 O -0.55 -0.48 12.81 -35.23 -0.45 -0.93 16 20 Si 0.94 0.25 25.13 -169.99 -4.27 -4.02 16 21 H -0.25 -0.44 7.04 56.52 0.40 -0.04 16 22 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 23 H -0.26 -0.05 7.11 56.52 0.40 0.35 16 24 C -0.05 -0.10 9.68 -39.61 -0.38 -0.49 16 25 C -0.15 -0.35 9.99 -39.43 -0.39 -0.74 16 26 C -0.39 1.01 5.28 38.41 0.20 1.21 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.08 -0.19 8.06 -51.93 -0.42 -0.61 16 34 H 0.08 -0.21 8.06 -51.93 -0.42 -0.63 16 35 H 0.07 -0.14 8.05 -51.93 -0.42 -0.55 16 36 H 0.06 -0.18 7.54 -51.93 -0.39 -0.58 16 37 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 38 H 0.07 0.05 8.13 -51.92 -0.42 -0.38 16 39 H 0.07 0.03 8.08 -51.93 -0.42 -0.39 16 40 H 0.40 -1.53 7.83 -40.82 -0.32 -1.85 16 41 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 42 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 43 H 0.07 0.11 7.61 -51.93 -0.39 -0.28 16 44 H 0.07 0.10 7.63 -51.93 -0.40 -0.30 16 45 H 0.13 0.22 6.30 -52.49 -0.33 -0.12 16 46 H 0.12 0.17 4.86 -52.48 -0.25 -0.08 16 47 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 48 H 0.38 -1.36 8.74 45.56 0.40 -0.96 16 49 H 0.13 0.06 8.06 -52.49 -0.42 -0.36 16 50 H 0.13 0.10 8.06 -52.48 -0.42 -0.32 16 51 H 0.08 -0.21 8.04 -51.93 -0.42 -0.63 16 52 H 0.08 -0.18 7.85 -51.93 -0.41 -0.59 16 LS Contribution 418.06 15.07 6.30 6.30 Total: 0.00 -7.85 418.06 -10.02 -17.87 By element: Atomic # 1 Polarization: -5.64 SS G_CDS: -8.42 Total: -14.06 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.48 Total: 3.63 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.32 Total: 0.56 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.56 Total: -4.59 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: -6.54 Total: -9.71 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -7.85 -10.02 -17.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.737 kcal (2) G-P(sol) polarization free energy of solvation -7.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds