Wall clock time and date at job start Sun Mar 7 2021 10:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 111.24221 * 2 1 4 4 C 1.89654 * 111.45802 * 125.06597 * 2 1 3 5 5 C 1.55920 * 99.33841 * 138.35691 * 4 2 1 6 6 C 1.53571 * 109.50277 * 319.37972 * 5 4 2 7 7 C 1.53006 * 109.12221 * 169.52061 * 6 5 4 8 8 N 1.46498 * 109.47111 * 66.45429 * 7 6 5 9 9 C 1.34770 * 119.99690 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00430 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99929 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47265 * 180.02562 * 11 9 8 13 13 O 1.42894 * 109.47191 * 179.97438 * 12 11 9 14 14 C 1.35905 * 117.00185 * 179.97438 * 13 12 11 15 15 C 1.38731 * 120.05360 * 359.72832 * 14 13 12 16 16 C 1.38142 * 119.94187 * 179.73790 * 15 14 13 17 17 C 1.38269 * 120.05569 * 0.51264 * 16 15 14 18 18 C 1.50703 * 119.94571 * 179.73768 * 17 16 15 19 19 O 1.42895 * 109.47648 * 245.02568 * 18 17 16 20 20 Si 1.86303 * 109.46819 * 5.02556 * 18 17 16 21 21 H 1.48499 * 109.47374 * 299.99797 * 20 18 17 22 22 H 1.48506 * 109.47248 * 59.99948 * 20 18 17 23 23 H 1.48504 * 109.47065 * 179.97438 * 20 18 17 24 24 C 1.38262 * 120.11336 * 359.76867 * 17 16 15 25 25 C 1.38145 * 120.05270 * 359.97106 * 24 17 16 26 26 C 1.55354 * 111.29225 * 49.07554 * 6 5 4 27 27 H 1.09002 * 109.47148 * 59.99975 * 1 2 3 28 28 H 1.09001 * 109.46900 * 300.00128 * 1 2 3 29 29 H 1.09004 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47233 * 59.99762 * 3 2 1 31 31 H 1.08997 * 109.47080 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47258 * 299.99719 * 3 2 1 33 33 H 1.08998 * 111.42418 * 255.88370 * 4 2 1 34 34 H 1.08994 * 111.42616 * 20.77348 * 4 2 1 35 35 H 1.08995 * 109.47225 * 79.40017 * 5 4 2 36 36 H 1.09000 * 109.47371 * 199.35610 * 5 4 2 37 37 H 1.09004 * 109.12533 * 288.65800 * 6 5 4 38 38 H 1.09007 * 109.46549 * 186.45308 * 7 6 5 39 39 H 1.08996 * 109.46988 * 306.45158 * 7 6 5 40 40 H 0.96998 * 120.00135 * 359.97438 * 8 7 6 41 41 H 1.09004 * 109.46485 * 299.99673 * 11 9 8 42 42 H 1.08995 * 109.47046 * 59.99428 * 11 9 8 43 43 H 1.08996 * 109.46906 * 299.99835 * 12 11 9 44 44 H 1.09006 * 109.47246 * 59.99724 * 12 11 9 45 45 H 1.08000 * 120.02837 * 359.97438 * 15 14 13 46 46 H 1.08004 * 119.97523 * 180.23360 * 16 15 14 47 47 H 1.08999 * 109.46663 * 125.02335 * 18 17 16 48 48 H 0.96698 * 114.00460 * 179.97438 * 19 18 17 49 49 H 1.08001 * 119.97614 * 179.97438 * 24 17 16 50 50 H 1.08005 * 120.03011 * 179.97438 * 25 24 17 51 51 H 1.08995 * 111.07416 * 213.38000 * 26 6 5 52 52 H 1.08996 * 111.09205 * 89.35608 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5568 -1.0141 1.4447 5 6 3.7194 -1.7445 0.7058 6 6 3.2462 -2.1820 -0.6881 7 6 4.4523 -2.6583 -1.5002 8 7 4.9920 -3.8815 -0.9014 9 6 6.0644 -4.4847 -1.4515 10 8 6.5829 -4.0145 -2.4419 11 6 6.6192 -5.7434 -0.8358 12 6 7.8261 -6.2188 -1.6471 13 8 8.3525 -7.4120 -1.0630 14 6 9.4349 -7.9691 -1.6671 15 6 9.9756 -7.3827 -2.8021 16 6 11.0792 -7.9479 -3.4112 17 6 11.6383 -9.1031 -2.8967 18 6 12.8386 -9.7210 -3.5666 19 8 12.4841 -11.0014 -4.0927 20 14 13.4124 -8.6171 -4.9534 21 1 12.3187 -8.4591 -5.9453 22 1 13.7809 -7.2864 -4.4067 23 1 14.5956 -9.2256 -5.6131 24 6 11.0977 -9.6928 -1.7690 25 6 9.9975 -9.1285 -1.1531 26 6 2.5556 -1.0124 -1.4423 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.1907 2.2612 0.8899 31 1 3.6274 1.7027 -0.0005 32 1 2.1908 2.2612 -0.8900 33 1 2.9328 -0.3695 2.2392 34 1 1.8196 -1.7209 1.8253 35 1 4.5681 -1.0679 0.6057 36 1 4.0203 -2.6213 1.2792 37 1 2.5392 -3.0050 -0.5833 38 1 4.1426 -2.8616 -2.5254 39 1 5.2196 -1.8841 -1.4992 40 1 4.5779 -4.2569 -0.1086 41 1 6.9283 -5.5405 0.1896 42 1 5.8519 -6.5175 -0.8376 43 1 7.5174 -6.4215 -2.6726 44 1 8.5933 -5.4445 -1.6448 45 1 9.5365 -6.4828 -3.2070 46 1 11.5029 -7.4897 -4.2927 47 1 13.6414 -9.8369 -2.8385 48 1 13.2102 -11.4579 -4.5393 49 1 11.5360 -10.5954 -1.3693 50 1 9.5752 -9.5897 -0.2725 51 1 1.7543 -1.3787 -2.0838 52 1 3.2797 -0.4331 -2.0150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:11:31 Heat of formation + Delta-G solvation = -133.557785 kcal Electronic energy + Delta-G solvation = -27479.990337 eV Core-core repulsion = 23567.579873 eV Total energy + Delta-G solvation = -3912.410464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41114 -40.81290 -39.11369 -37.92075 -37.23281 -34.70292 -33.40114 -32.08757 -31.58234 -30.37567 -29.10957 -28.38315 -27.43896 -26.27574 -25.21514 -23.97532 -23.39553 -22.07988 -21.48187 -20.67274 -19.53052 -18.45167 -17.88775 -17.54193 -17.44887 -16.99879 -16.77491 -16.42177 -15.87592 -15.78380 -15.70663 -15.04787 -14.81603 -14.70014 -14.50497 -14.45836 -14.28772 -14.06299 -13.82709 -13.81915 -13.69163 -13.62653 -13.39263 -13.29603 -13.15653 -12.93720 -12.81177 -12.52014 -12.43523 -12.20850 -12.15591 -11.95250 -11.84587 -11.74388 -11.67141 -11.41367 -11.16524 -10.76553 -10.38298 -10.29548 -10.28085 -10.11108 -10.06324 -9.22653 0.24531 0.28282 1.16394 1.43060 1.47815 1.50556 1.67315 1.80108 1.89249 2.01607 2.04578 2.50819 2.60939 2.66481 3.47818 3.55416 3.72779 3.78936 3.82928 3.86627 3.93832 4.00950 4.07172 4.11672 4.22397 4.30559 4.40700 4.49240 4.53469 4.60905 4.64426 4.65232 4.67061 4.76153 4.78925 4.80554 4.82115 4.83000 4.85748 4.88986 4.93788 5.14255 5.16345 5.21810 5.24653 5.32449 5.37569 5.48110 5.52362 5.56446 5.61928 5.64052 5.69605 6.28553 6.44926 6.84394 7.13907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.036 2.964 3 C -0.461 4.461 4 C -0.405 4.405 5 C -0.118 4.118 6 C -0.088 4.088 7 C 0.124 3.876 8 N -0.715 5.715 9 C 0.516 3.484 10 O -0.588 6.588 11 C -0.132 4.132 12 C 0.072 3.928 13 O -0.318 6.318 14 C 0.121 3.879 15 C -0.212 4.212 16 C -0.097 4.097 17 C -0.126 4.126 18 C -0.072 4.072 19 O -0.563 6.563 20 Si 0.970 3.030 21 H -0.276 1.276 22 H -0.262 1.262 23 H -0.251 1.251 24 C -0.055 4.055 25 C -0.155 4.155 26 C -0.408 4.408 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.418 0.582 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.099 0.901 48 H 0.398 0.602 49 H 0.151 0.849 50 H 0.148 0.852 51 H 0.083 0.917 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 0.000 4.425 4.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.229 2.771 3 C -0.568 4.568 4 C -0.491 4.491 5 C -0.155 4.155 6 C -0.106 4.106 7 C 0.000 4.000 8 N -0.368 5.368 9 C 0.303 3.697 10 O -0.469 6.469 11 C -0.171 4.171 12 C -0.003 4.003 13 O -0.232 6.232 14 C 0.076 3.924 15 C -0.230 4.230 16 C -0.115 4.115 17 C -0.127 4.127 18 C -0.183 4.183 19 O -0.372 6.372 20 Si 0.796 3.204 21 H -0.201 1.201 22 H -0.186 1.186 23 H -0.175 1.175 24 C -0.073 4.073 25 C -0.174 4.174 26 C -0.493 4.493 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.153 0.847 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.248 0.752 49 H 0.168 0.832 50 H 0.166 0.834 51 H 0.102 0.898 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.088 1.027 3.465 4.174 hybrid contribution 0.301 -0.184 -0.130 0.376 sum -1.787 0.843 3.335 3.877 Atomic orbital electron populations 1.26192 1.21217 1.04620 1.04349 0.79459 0.65607 0.65633 0.66353 1.26252 1.06570 1.19568 1.04386 1.26741 1.03683 1.08424 1.10235 1.21998 0.98442 1.00967 0.94101 1.21709 0.95396 0.99308 0.94218 1.21560 0.95773 0.85670 0.96955 1.45974 1.30900 1.27610 1.32279 1.20688 0.80081 0.85565 0.83378 1.90734 1.60953 1.67290 1.27914 1.21437 0.98121 0.95544 1.02004 1.22440 0.95932 0.84852 0.97091 1.85952 1.42690 1.41188 1.53378 1.19179 0.87449 0.93648 0.92131 1.21343 1.00048 1.03391 0.98257 1.20974 0.95457 0.95920 0.99111 1.19479 0.99149 0.96331 0.97718 1.24616 0.97777 0.91367 1.04538 1.86464 1.42346 1.30919 1.77438 0.85417 0.78876 0.78539 0.77580 1.20113 1.18629 1.17485 1.21050 0.93874 0.98774 0.93572 1.20733 0.98308 0.95253 1.03081 1.26806 1.05478 1.05664 1.11307 0.91436 0.91216 0.90913 0.91189 0.91477 0.91381 0.90402 0.89851 0.92041 0.90962 0.89281 0.92706 0.92532 0.74477 0.85347 0.85448 0.91954 0.91751 0.84651 0.85583 0.88343 0.75194 0.83167 0.83376 0.89781 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.30 8.65 113.37 0.98 3.28 16 2 Si 1.04 -7.61 13.35 68.60 0.92 -6.69 16 3 C -0.46 1.78 8.65 113.37 0.98 2.76 16 4 C -0.41 2.52 5.95 72.99 0.43 2.96 16 5 C -0.12 0.65 5.01 31.80 0.16 0.81 16 6 C -0.09 0.43 2.37 -9.79 -0.02 0.41 16 7 C 0.12 -0.04 4.92 86.38 0.43 0.38 16 8 N -0.72 1.72 5.36 -463.06 -2.48 -0.76 16 9 C 0.52 1.38 7.83 87.66 0.69 2.07 16 10 O -0.59 -7.23 15.98 -3.02 -0.05 -7.28 16 11 C -0.13 0.34 6.07 29.85 0.18 0.53 16 12 C 0.07 0.23 4.03 71.98 0.29 0.52 16 13 O -0.32 -1.69 10.14 -92.48 -0.94 -2.62 16 14 C 0.12 0.84 6.69 22.51 0.15 0.99 16 15 C -0.21 -1.51 9.04 22.36 0.20 -1.30 16 16 C -0.10 -0.64 8.66 22.25 0.19 -0.44 16 17 C -0.13 -0.65 5.39 -19.85 -0.11 -0.75 16 18 C -0.07 -0.03 2.79 71.24 0.20 0.17 16 19 O -0.56 -0.56 12.81 -148.98 -1.91 -2.47 16 20 Si 0.97 0.79 25.13 68.60 1.72 2.52 16 21 H -0.28 -1.42 7.04 99.48 0.70 -0.72 16 22 H -0.26 -0.67 7.11 99.48 0.71 0.03 16 23 H -0.25 0.08 7.11 99.48 0.71 0.78 16 24 C -0.05 -0.21 9.68 22.25 0.22 0.00 16 25 C -0.16 -0.73 9.99 22.37 0.22 -0.50 16 26 C -0.41 2.01 5.28 72.79 0.38 2.40 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 29 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 30 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 31 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.08 -0.44 8.06 -2.39 -0.02 -0.46 16 34 H 0.08 -0.56 8.06 -2.39 -0.02 -0.58 16 35 H 0.06 -0.25 8.05 -2.39 -0.02 -0.27 16 36 H 0.07 -0.50 7.54 -2.39 -0.02 -0.52 16 37 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 38 H 0.05 0.16 8.13 -2.38 -0.02 0.14 16 39 H 0.06 0.14 8.08 -2.39 -0.02 0.12 16 40 H 0.42 -3.63 7.83 -92.71 -0.73 -4.36 16 41 H 0.13 -0.86 8.14 -2.38 -0.02 -0.88 16 42 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H 0.06 0.31 7.61 -2.39 -0.02 0.29 16 44 H 0.06 0.29 7.63 -2.38 -0.02 0.28 16 45 H 0.14 0.76 6.30 -2.91 -0.02 0.74 16 46 H 0.13 0.58 4.86 -2.91 -0.01 0.56 16 47 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 48 H 0.40 -3.28 8.74 -74.06 -0.65 -3.93 16 49 H 0.15 -0.02 8.06 -2.91 -0.02 -0.05 16 50 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 51 H 0.08 -0.44 8.04 -2.39 -0.02 -0.46 16 52 H 0.08 -0.27 7.85 -2.39 -0.02 -0.29 16 Total: 0.00 -19.30 418.06 3.12 -16.18 By element: Atomic # 1 Polarization: -13.42 SS G_CDS: 0.28 Total: -13.14 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 5.58 Total: 14.27 kcal Atomic # 7 Polarization: 1.72 SS G_CDS: -2.48 Total: -0.76 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -2.89 Total: -12.37 kcal Atomic # 14 Polarization: -6.82 SS G_CDS: 2.64 Total: -4.18 kcal Total: -19.30 3.12 -16.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.381 kcal (2) G-P(sol) polarization free energy of solvation -19.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds