Wall clock time and date at job start Sun Mar 7 2021 10:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37641 * 125.67576 * 2 1 4 4 C 1.46675 * 126.22633 * 0.02562 * 3 2 1 5 5 O 1.21700 * 119.99746 * 5.68663 * 4 3 2 6 6 N 1.34769 * 120.00152 * 185.69378 * 4 3 2 7 7 C 1.46501 * 120.00066 * 175.00509 * 6 4 3 8 8 C 1.53008 * 109.47133 * 179.97438 * 7 6 4 9 9 C 1.53564 * 109.47250 * 66.45545 * 8 7 6 10 10 C 1.55143 * 111.28966 * 169.05900 * 9 8 7 11 11 Si 1.89332 * 101.35236 * 331.41683 * 10 9 8 12 12 C 1.86290 * 111.46388 * 120.85032 * 11 10 9 13 13 C 1.86299 * 111.45675 * 245.80088 * 11 10 9 14 14 C 1.55915 * 109.47029 * 186.50082 * 8 7 6 15 15 C 1.37884 * 107.54912 * 180.23908 * 3 2 1 16 16 C 1.39872 * 107.09063 * 359.76254 * 15 3 2 17 17 Br 1.89106 * 126.07198 * 180.02562 * 16 15 3 18 18 C 1.35505 * 107.85624 * 0.02562 * 16 15 3 19 19 C 1.50702 * 125.56994 * 179.97438 * 18 16 15 20 20 O 1.42894 * 109.47235 * 303.51966 * 19 18 16 21 21 Si 1.86302 * 109.46948 * 63.52258 * 19 18 16 22 22 H 1.48497 * 109.47540 * 63.61460 * 21 19 18 23 23 H 1.48498 * 109.47095 * 183.61745 * 21 19 18 24 24 H 1.48501 * 109.47152 * 303.61211 * 21 19 18 25 25 H 1.09001 * 109.47431 * 275.56255 * 1 2 3 26 26 H 1.09000 * 109.46971 * 35.56365 * 1 2 3 27 27 H 1.09003 * 109.46581 * 155.56551 * 1 2 3 28 28 H 0.96997 * 120.00543 * 355.00489 * 6 4 3 29 29 H 1.08998 * 109.47432 * 299.99855 * 7 6 4 30 30 H 1.09006 * 109.46730 * 60.00230 * 7 6 4 31 31 H 1.08993 * 109.46666 * 306.45124 * 8 7 6 32 32 H 1.09003 * 109.12625 * 289.54721 * 9 8 7 33 33 H 1.09006 * 109.12366 * 48.57954 * 9 8 7 34 34 H 1.09007 * 111.04803 * 89.43610 * 10 9 8 35 35 H 1.09003 * 111.05242 * 213.35397 * 10 9 8 36 36 H 1.09009 * 109.46853 * 60.00324 * 12 11 10 37 37 H 1.08997 * 109.47359 * 180.02562 * 12 11 10 38 38 H 1.09002 * 109.47405 * 300.00754 * 12 11 10 39 39 H 1.09003 * 109.47562 * 59.99557 * 13 11 10 40 40 H 1.09008 * 109.47173 * 179.97438 * 13 11 10 41 41 H 1.08999 * 109.46984 * 299.99448 * 13 11 10 42 42 H 1.09002 * 111.42865 * 316.88538 * 14 8 7 43 43 H 1.09006 * 111.42594 * 81.82664 * 14 8 7 44 44 H 1.07999 * 126.45336 * 179.78736 * 15 3 2 45 45 H 1.09004 * 109.46684 * 183.51603 * 19 18 16 46 46 H 0.96700 * 114.00133 * 59.99918 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8121 2.5123 0.0005 5 8 0.6263 2.7648 0.1055 6 7 2.7067 3.5136 -0.1153 7 6 2.2447 4.8996 -0.2250 8 6 3.4521 5.8318 -0.3433 9 6 4.1721 5.5705 -1.6744 10 6 5.2313 6.6658 -1.9663 11 14 4.4856 8.1550 -1.0659 12 6 5.6410 8.8105 0.2402 13 6 3.9880 9.4948 -2.2609 14 6 2.9711 7.3141 -0.2938 15 6 3.5782 0.6891 -0.0055 16 6 3.5529 -0.7094 -0.0033 17 35 5.0610 -1.8503 -0.0079 18 6 2.2558 -1.1015 0.0028 19 6 1.7714 -2.5285 0.0065 20 8 2.3179 -3.2199 -1.1183 21 14 2.3203 -3.3665 1.5773 22 1 1.6824 -2.7018 2.7419 23 1 1.9189 -4.7958 1.5420 24 1 3.7971 -3.2701 1.6998 25 1 -0.3634 0.0996 1.0228 26 1 -0.3633 0.8360 -0.5977 27 1 -0.3632 -0.9357 -0.4251 28 1 3.6564 3.3168 -0.1261 29 1 1.6163 5.0042 -1.1094 30 1 1.6692 5.1620 0.6628 31 1 4.1376 5.6452 0.4833 32 1 4.6654 4.5996 -1.6290 33 1 3.4387 5.5590 -2.4808 34 1 6.1993 6.3970 -1.5432 35 1 5.3136 6.8556 -3.0366 36 1 6.5764 9.1214 -0.2251 37 1 5.1806 9.6644 0.7371 38 1 5.8419 8.0290 0.9730 39 1 3.2449 9.1040 -2.9562 40 1 3.5634 10.3340 -1.7097 41 1 4.8640 9.8302 -2.8160 42 1 2.0791 7.4638 -0.9022 43 1 2.8107 7.6466 0.7318 44 1 4.4583 1.3151 -0.0102 45 1 0.6830 -2.5429 -0.0518 46 1 3.2844 -3.2467 -1.1320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_5000100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:19:10 Heat of formation + Delta-G solvation = -63.494222 kcal Electronic energy + Delta-G solvation = -25737.727219 eV Core-core repulsion = 22025.556977 eV Total energy + Delta-G solvation = -3712.170242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 388.073 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.88576 -40.48686 -38.03382 -37.76466 -35.09540 -34.24969 -32.30071 -31.10545 -30.34603 -29.09289 -28.36352 -27.80971 -27.40151 -25.95342 -23.98755 -23.27510 -21.43606 -20.99601 -20.37125 -19.07931 -18.33936 -17.38631 -17.12477 -16.82427 -16.20265 -16.11187 -15.78915 -15.47580 -15.00280 -14.84889 -14.61423 -14.48776 -14.32309 -14.25127 -13.86560 -13.83604 -13.79168 -13.66868 -13.42419 -13.26274 -13.20734 -13.12049 -12.78362 -12.71942 -12.51782 -12.26673 -12.17932 -11.85960 -11.76234 -11.37269 -11.31968 -10.92375 -10.75271 -10.74379 -10.37962 -10.32420 -10.15667 -9.83126 -9.30062 0.11819 0.50203 0.83779 1.12956 1.41278 1.45861 1.57247 1.78608 1.91962 2.02846 2.07049 2.13154 2.29569 2.67429 3.15957 3.41702 3.54308 3.66381 3.83755 3.90421 4.04999 4.10398 4.20947 4.27330 4.39746 4.53617 4.61192 4.62095 4.62718 4.67677 4.80098 4.82354 4.84028 4.85360 4.87528 4.90310 5.14986 5.22572 5.25704 5.31837 5.39031 5.53618 5.55699 5.58355 5.62934 5.66431 5.77724 6.30831 6.38091 7.02248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.394 5.394 3 C -0.054 4.054 4 C 0.587 3.413 5 O -0.578 6.578 6 N -0.704 5.704 7 C 0.131 3.869 8 C -0.092 4.092 9 C -0.114 4.114 10 C -0.409 4.409 11 Si 1.039 2.961 12 C -0.456 4.456 13 C -0.462 4.462 14 C -0.404 4.404 15 C -0.098 4.098 16 C -0.192 4.192 17 Br -0.011 7.011 18 C 0.052 3.948 19 C -0.068 4.068 20 O -0.539 6.539 21 Si 0.950 3.050 22 H -0.259 1.259 23 H -0.247 1.247 24 H -0.214 1.214 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.415 0.585 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.180 0.820 45 H 0.137 0.863 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 1.946 0.556 3.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.067 5.067 3 C -0.168 4.168 4 C 0.375 3.625 5 O -0.460 6.460 6 N -0.355 5.355 7 C 0.008 3.992 8 C -0.111 4.111 9 C -0.152 4.152 10 C -0.494 4.494 11 Si 1.233 2.767 12 C -0.564 4.564 13 C -0.568 4.568 14 C -0.489 4.489 15 C -0.125 4.125 16 C -0.278 4.278 17 Br 0.073 6.927 18 C -0.071 4.071 19 C -0.177 4.177 20 O -0.346 6.346 21 Si 0.768 3.232 22 H -0.183 1.183 23 H -0.170 1.170 24 H -0.135 1.135 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.253 0.747 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.197 0.803 45 H 0.155 0.845 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.912 1.334 1.201 2.622 hybrid contribution 0.160 0.484 -0.424 0.664 sum 2.072 1.818 0.776 2.864 Atomic orbital electron populations 1.22515 0.74208 1.06052 1.05357 1.43957 1.07848 1.03933 1.50996 1.20141 0.90349 0.87753 1.18600 1.17015 0.85489 0.83839 0.76207 1.90812 1.17707 1.85248 1.52214 1.45663 1.10235 1.06255 1.73386 1.21561 0.97426 0.78619 1.01619 1.21879 0.95493 0.94494 0.99213 1.21791 0.97531 0.99671 0.96193 1.26615 1.02447 1.12863 1.07473 0.79417 0.65919 0.65718 0.65696 1.26190 1.10847 1.06607 1.12716 1.26257 1.05585 1.13442 1.11545 1.26926 1.13673 1.00551 1.07714 1.21478 0.95522 0.92893 1.02596 1.20859 0.91236 0.95150 1.20510 1.96646 1.36074 1.61967 1.98033 1.21108 0.89733 0.90437 1.05789 1.24905 1.04171 0.86894 1.01737 1.86528 1.27153 1.75662 1.45305 0.85617 0.84249 0.79840 0.73538 1.18274 1.16979 1.13498 0.88999 0.88999 0.86979 0.74706 0.92132 0.92002 0.88865 0.91501 0.92381 0.90067 0.90560 0.91197 0.91337 0.90888 0.91383 0.91321 0.91289 0.90206 0.89708 0.80260 0.84545 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.01 10.13 127.77 1.29 1.30 16 2 N -0.39 -1.49 3.16 -519.59 -1.64 -3.14 16 3 C -0.05 -0.23 6.88 40.35 0.28 0.05 16 4 C 0.59 3.34 7.77 86.45 0.67 4.01 16 5 O -0.58 -7.05 14.89 -4.35 -0.06 -7.12 16 6 N -0.70 0.33 5.35 -467.06 -2.50 -2.17 16 7 C 0.13 -0.06 5.05 86.38 0.44 0.37 16 8 C -0.09 0.47 2.19 -9.59 -0.02 0.45 16 9 C -0.11 0.57 5.16 31.52 0.16 0.73 16 10 C -0.41 2.39 5.85 72.72 0.43 2.81 16 11 Si 1.04 -7.98 13.36 68.60 0.92 -7.06 16 12 C -0.46 2.51 8.65 113.37 0.98 3.49 16 13 C -0.46 1.96 8.65 113.37 0.98 2.94 16 14 C -0.40 2.24 5.29 72.99 0.39 2.62 16 15 C -0.10 -0.09 10.34 22.58 0.23 0.14 16 16 C -0.19 -0.48 6.07 22.03 0.13 -0.35 16 17 Br -0.01 -0.01 28.73 -20.37 -0.59 -0.59 16 18 C 0.05 0.15 5.34 41.35 0.22 0.37 16 19 C -0.07 -0.02 2.82 71.24 0.20 0.18 16 20 O -0.54 -1.51 12.88 -148.98 -1.92 -3.43 16 21 Si 0.95 -0.14 26.81 68.60 1.84 1.70 16 22 H -0.26 -0.48 7.11 99.48 0.71 0.23 16 23 H -0.25 -0.29 7.11 99.48 0.71 0.41 16 24 H -0.21 0.06 5.45 99.48 0.54 0.60 16 25 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.09 0.29 6.79 -2.39 -0.02 0.28 16 27 H 0.11 -0.55 6.70 -2.39 -0.02 -0.57 16 28 H 0.42 -2.40 6.74 -92.71 -0.62 -3.03 16 29 H 0.06 0.11 8.07 -2.39 -0.02 0.09 16 30 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 31 H 0.09 -0.68 8.13 -2.39 -0.02 -0.70 16 32 H 0.07 -0.39 7.55 -2.39 -0.02 -0.41 16 33 H 0.06 -0.18 8.04 -2.38 -0.02 -0.20 16 34 H 0.08 -0.51 8.04 -2.38 -0.02 -0.53 16 35 H 0.08 -0.38 8.04 -2.39 -0.02 -0.40 16 36 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 37 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 38 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 39 H 0.07 -0.24 7.96 -2.39 -0.02 -0.25 16 40 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 41 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 42 H 0.08 -0.36 8.03 -2.39 -0.02 -0.38 16 43 H 0.08 -0.50 8.06 -2.38 -0.02 -0.52 16 44 H 0.18 -0.93 7.45 -2.91 -0.02 -0.95 16 45 H 0.14 -0.48 6.34 -2.38 -0.02 -0.50 16 46 H 0.38 0.02 6.27 -74.06 -0.46 -0.45 16 Total: 0.00 -14.61 383.35 2.92 -11.69 By element: Atomic # 1 Polarization: -9.50 SS G_CDS: 0.49 Total: -9.01 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.38 Total: 19.12 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -4.14 Total: -5.30 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -1.98 Total: -10.54 kcal Atomic # 14 Polarization: -8.11 SS G_CDS: 2.76 Total: -5.36 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.59 Total: -0.59 kcal Total: -14.61 2.92 -11.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_5000100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.802 kcal (2) G-P(sol) polarization free energy of solvation -14.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds