Wall clock time and date at job start Sun Mar 7 2021 10:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35997 * 116.99812 * 2 1 4 4 C 1.38530 * 120.07284 * 0.02562 * 3 2 1 5 5 C 1.38283 * 119.99775 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.92553 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47508 * 300.00323 * 6 5 4 8 8 Si 1.86297 * 109.46985 * 180.02562 * 6 5 4 9 9 H 1.48510 * 109.47173 * 60.00718 * 8 6 5 10 10 H 1.48505 * 109.47322 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47649 * 300.00352 * 8 6 5 12 12 C 1.38216 * 120.14782 * 359.97438 * 5 4 3 13 13 C 1.38286 * 120.14398 * 359.76803 * 12 5 4 14 14 C 1.38521 * 119.99986 * 0.50229 * 13 12 5 15 15 O 1.35998 * 120.07534 * 179.74461 * 14 13 12 16 16 C 1.42898 * 116.99463 * 359.73159 * 15 14 13 17 17 C 1.50706 * 109.47060 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99699 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.46506 * 119.99969 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47237 * 179.72043 * 20 19 17 22 22 C 1.53573 * 109.47298 * 66.45247 * 21 20 19 23 23 C 1.55142 * 111.29462 * 169.06014 * 22 21 20 24 24 Si 1.89338 * 101.34667 * 331.41516 * 23 22 21 25 25 C 1.86298 * 111.45914 * 120.85141 * 24 23 22 26 26 C 1.86298 * 111.45758 * 245.79617 * 24 23 22 27 27 C 1.55911 * 109.47189 * 186.49640 * 21 20 19 28 28 H 1.08995 * 109.47240 * 300.00029 * 1 2 3 29 29 H 1.09001 * 109.46950 * 60.00103 * 1 2 3 30 30 H 1.09001 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00095 * 359.95867 * 4 3 2 32 32 H 1.08999 * 109.46865 * 60.00920 * 6 5 4 33 33 H 0.96692 * 114.00214 * 300.00462 * 7 6 5 34 34 H 1.07996 * 119.92306 * 180.02562 * 12 5 4 35 35 H 1.07997 * 119.99786 * 180.25521 * 13 12 5 36 36 H 1.09004 * 109.47454 * 60.00063 * 16 15 14 37 37 H 1.08998 * 109.47671 * 299.99844 * 16 15 14 38 38 H 0.97005 * 120.00161 * 359.72088 * 19 17 16 39 39 H 1.09001 * 109.46512 * 299.72412 * 20 19 17 40 40 H 1.08998 * 109.47174 * 59.71534 * 20 19 17 41 41 H 1.08996 * 109.46978 * 306.45199 * 21 20 19 42 42 H 1.09007 * 109.12789 * 289.54725 * 22 21 20 43 43 H 1.09005 * 109.12280 * 48.57219 * 22 21 20 44 44 H 1.08998 * 111.04876 * 89.42814 * 23 22 21 45 45 H 1.08998 * 111.05252 * 213.35911 * 23 22 21 46 46 H 1.09004 * 109.46992 * 60.00035 * 25 24 23 47 47 H 1.09002 * 109.46729 * 180.02562 * 25 24 23 48 48 H 1.08994 * 109.47456 * 299.99907 * 25 24 23 49 49 H 1.09005 * 109.47313 * 59.99743 * 26 24 23 50 50 H 1.09001 * 109.47335 * 179.97438 * 26 24 23 51 51 H 1.08997 * 109.47335 * 299.99813 * 26 24 23 52 52 H 1.08999 * 111.42569 * 316.88203 * 27 21 20 53 53 H 1.08993 * 111.42505 * 81.82823 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9227 3.6058 0.0011 6 6 1.1019 4.8697 0.0011 7 8 0.2779 4.9026 -1.1659 8 14 2.2368 6.3471 0.0011 9 1 3.0934 6.3133 -1.2116 10 1 1.4280 7.5926 0.0017 11 1 3.0936 6.3133 1.2135 12 6 3.3029 3.6799 0.0016 13 6 4.0605 2.5231 0.0065 14 6 3.4363 1.2864 0.0003 15 8 4.1799 0.1477 -0.0002 16 6 5.6007 0.3008 -0.0001 17 6 6.2523 -1.0581 -0.0001 18 8 5.5675 -2.0590 0.0003 19 7 7.5961 -1.1610 0.0005 20 6 8.2296 -2.4820 0.0000 21 6 9.7508 -2.3182 -0.0062 22 6 10.2030 -1.6863 1.3185 23 6 11.7452 -1.7496 1.4754 24 14 12.1586 -3.2996 0.4696 25 6 13.3286 -2.9133 -0.9277 26 6 12.8284 -4.6577 1.5549 27 6 10.4233 -3.7149 -0.1730 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2148 2.3193 0.0003 32 1 0.4729 4.8943 0.8909 33 1 0.7719 4.8832 -1.9969 34 1 3.7906 4.6435 0.0024 35 1 5.1387 2.5838 0.0110 36 1 5.9069 0.8502 0.8901 37 1 5.9070 0.8510 -0.8898 38 1 8.1439 -0.3604 -0.0031 39 1 7.9267 -3.0304 0.8920 40 1 7.9199 -3.0331 -0.8879 41 1 10.0434 -1.6734 -0.8348 42 1 9.8839 -0.6443 1.3445 43 1 9.7375 -2.2210 2.1465 44 1 12.2189 -0.8667 1.0464 45 1 12.0276 -1.8738 2.5208 46 1 14.2556 -2.5065 -0.5236 47 1 13.5438 -3.8256 -1.4841 48 1 12.8706 -2.1818 -1.5934 49 1 12.0848 -4.9221 2.3068 50 1 13.0545 -5.5322 0.9448 51 1 13.7374 -4.3136 2.0482 52 1 9.9380 -4.4673 0.4486 53 1 10.4488 -4.0221 -1.2185 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_60476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:19:18 Heat of formation + Delta-G solvation = -159.035028 kcal Electronic energy + Delta-G solvation = -30458.916680 eV Core-core repulsion = 26226.719248 eV Total energy + Delta-G solvation = -4232.197432 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.83272 -40.89784 -39.40433 -38.89575 -37.82438 -36.91520 -34.75513 -32.09515 -31.50002 -30.76529 -29.51303 -29.07881 -28.46121 -28.36282 -26.65627 -26.01597 -24.01483 -23.50528 -22.55807 -21.66323 -20.73433 -19.81388 -18.62987 -18.37863 -17.99882 -17.58200 -17.19482 -16.97570 -16.72632 -16.20626 -16.08122 -15.95996 -15.83374 -15.49745 -15.41502 -14.99779 -14.68891 -14.57555 -14.40057 -13.85183 -13.80252 -13.78040 -13.74341 -13.59649 -13.45603 -13.42092 -13.22622 -13.12303 -12.64487 -12.56022 -12.52004 -12.19025 -12.18545 -12.15998 -12.03754 -11.98977 -11.85925 -11.57676 -11.37458 -11.10514 -10.74826 -10.41512 -10.37341 -10.30682 -10.13870 -9.79386 -8.92985 0.15459 0.24944 1.20686 1.43431 1.47606 1.51118 1.55989 1.79373 1.95569 2.02164 2.07099 2.30538 2.54479 2.58043 2.67709 3.49630 3.52460 3.70146 3.81464 3.85350 3.87730 4.01110 4.03695 4.07501 4.11179 4.14330 4.25787 4.33014 4.36563 4.53169 4.59945 4.62668 4.64599 4.66078 4.68055 4.79036 4.81720 4.83132 4.84905 4.87593 4.89832 4.98698 5.08894 5.14214 5.25225 5.28637 5.34445 5.38550 5.53505 5.56958 5.57963 5.62433 5.66229 5.95368 6.40011 6.52932 6.71476 7.11885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.079 3.921 4 C -0.148 4.148 5 C -0.117 4.117 6 C -0.081 4.081 7 O -0.554 6.554 8 Si 0.987 3.013 9 H -0.246 1.246 10 H -0.279 1.279 11 H -0.251 1.251 12 C -0.124 4.124 13 C -0.161 4.161 14 C 0.083 3.917 15 O -0.314 6.314 16 C 0.035 3.965 17 C 0.509 3.491 18 O -0.576 6.576 19 N -0.709 5.709 20 C 0.128 3.872 21 C -0.090 4.090 22 C -0.114 4.114 23 C -0.406 4.406 24 Si 1.042 2.958 25 C -0.455 4.455 26 C -0.463 4.463 27 C -0.408 4.408 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.389 0.611 34 H 0.146 0.854 35 H 0.172 0.828 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.420 0.580 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 5.417 -0.327 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.033 3.967 4 C -0.166 4.166 5 C -0.118 4.118 6 C -0.191 4.191 7 O -0.361 6.361 8 Si 0.811 3.189 9 H -0.170 1.170 10 H -0.205 1.205 11 H -0.175 1.175 12 C -0.142 4.142 13 C -0.179 4.179 14 C 0.037 3.963 15 O -0.228 6.228 16 C -0.043 4.043 17 C 0.295 3.705 18 O -0.455 6.455 19 N -0.363 5.363 20 C 0.004 3.996 21 C -0.109 4.109 22 C -0.152 4.152 23 C -0.492 4.492 24 Si 1.235 2.765 25 C -0.563 4.563 26 C -0.570 4.570 27 C -0.493 4.493 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.141 0.859 33 H 0.238 0.762 34 H 0.164 0.836 35 H 0.189 0.811 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.094 0.906 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.037 4.994 0.115 7.836 hybrid contribution -0.182 -0.340 -0.271 0.472 sum 5.855 4.654 -0.157 7.481 Atomic orbital electron populations 1.23305 0.76677 1.05227 1.02272 1.86196 1.23134 1.26579 1.89041 1.18679 0.89782 0.85755 1.02443 1.21027 1.00739 0.90219 1.04641 1.20224 0.94146 0.95320 1.02108 1.25098 1.00658 1.01276 0.92039 1.86477 1.36552 1.96887 1.16195 0.85155 0.76983 0.75151 0.81638 1.16955 1.20453 1.17536 1.21011 0.92910 0.98915 1.01316 1.21324 1.02102 0.89483 1.04991 1.18592 0.88356 0.86403 1.02917 1.86227 1.18153 1.29059 1.89326 1.22768 0.79436 0.95176 1.06899 1.20598 0.83131 0.90835 0.75946 1.90768 1.64211 1.40272 1.50223 1.45786 1.05069 1.10830 1.74655 1.21510 0.93081 0.83659 1.01323 1.21875 0.91664 0.97934 0.99421 1.21793 0.95915 1.01232 0.96217 1.26582 0.98259 1.15645 1.08711 0.79387 0.65275 0.66085 0.65786 1.26177 1.11046 1.05230 1.13811 1.26275 1.06637 1.13737 1.10302 1.26973 1.18638 0.97202 1.06501 0.91569 0.91583 0.87168 0.83480 0.85946 0.76186 0.83636 0.81069 0.85637 0.85550 0.74177 0.92780 0.92660 0.88523 0.90970 0.92615 0.89802 0.90530 0.91097 0.91447 0.90793 0.91516 0.91432 0.91200 0.90614 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.34 -3.90 10.28 -79.67 -0.82 -4.72 16 3 C 0.08 0.69 6.70 22.57 0.15 0.84 16 4 C -0.15 -0.57 8.60 22.35 0.19 -0.38 16 5 C -0.12 -0.08 5.39 -19.86 -0.11 -0.18 16 6 C -0.08 0.16 2.82 71.24 0.20 0.36 16 7 O -0.55 0.18 12.76 -148.98 -1.90 -1.72 16 8 Si 0.99 -3.32 25.06 68.60 1.72 -1.60 16 9 H -0.25 1.02 7.11 99.48 0.71 1.72 16 10 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 11 H -0.25 0.79 7.11 99.48 0.71 1.49 16 12 C -0.12 0.16 8.66 22.28 0.19 0.35 16 13 C -0.16 0.12 9.04 22.35 0.20 0.32 16 14 C 0.08 0.57 6.70 22.57 0.15 0.72 16 15 O -0.31 -3.17 9.46 -67.12 -0.63 -3.81 16 16 C 0.03 -0.02 5.22 71.24 0.37 0.35 16 17 C 0.51 2.90 7.91 87.66 0.69 3.59 16 18 O -0.58 -10.58 16.50 16.00 0.26 -10.31 16 19 N -0.71 1.41 5.37 -463.05 -2.49 -1.08 16 20 C 0.13 0.05 5.05 86.38 0.44 0.48 16 21 C -0.09 0.48 2.19 -9.59 -0.02 0.46 16 22 C -0.11 0.67 5.16 31.52 0.16 0.83 16 23 C -0.41 2.75 5.85 72.72 0.43 3.17 16 24 Si 1.04 -8.19 13.36 68.60 0.92 -7.27 16 25 C -0.46 2.70 8.65 113.37 0.98 3.68 16 26 C -0.46 1.88 8.65 113.37 0.98 2.86 16 27 C -0.41 2.01 5.29 72.99 0.39 2.39 16 28 H 0.07 -0.01 7.66 -2.39 -0.02 -0.03 16 29 H 0.07 0.01 7.66 -2.39 -0.02 -0.01 16 30 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.15 0.25 6.30 -2.91 -0.02 0.23 16 32 H 0.12 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.39 -2.57 8.70 -74.06 -0.64 -3.21 16 34 H 0.15 -0.84 4.86 -2.91 -0.01 -0.85 16 35 H 0.17 -1.47 6.30 -2.91 -0.02 -1.49 16 36 H 0.13 -0.95 7.65 -2.39 -0.02 -0.97 16 37 H 0.13 -0.98 7.68 -2.39 -0.02 -1.00 16 38 H 0.42 -4.20 7.84 -92.70 -0.73 -4.92 16 39 H 0.05 0.21 8.07 -2.39 -0.02 0.20 16 40 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.10 -0.80 8.13 -2.39 -0.02 -0.82 16 42 H 0.07 -0.58 7.55 -2.38 -0.02 -0.59 16 43 H 0.06 -0.19 8.04 -2.38 -0.02 -0.21 16 44 H 0.08 -0.65 8.04 -2.39 -0.02 -0.67 16 45 H 0.08 -0.44 8.04 -2.39 -0.02 -0.46 16 46 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 47 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 48 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 49 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 50 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 51 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 52 H 0.07 -0.24 8.03 -2.39 -0.02 -0.26 16 53 H 0.08 -0.42 8.06 -2.39 -0.02 -0.44 16 Total: 0.00 -27.44 426.44 3.87 -23.57 By element: Atomic # 1 Polarization: -14.37 SS G_CDS: 0.30 Total: -14.06 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 6.51 Total: 21.01 kcal Atomic # 7 Polarization: 1.41 SS G_CDS: -2.49 Total: -1.08 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -3.09 Total: -20.56 kcal Atomic # 14 Polarization: -11.51 SS G_CDS: 2.64 Total: -8.87 kcal Total: -27.44 3.87 -23.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_60476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.469 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds