Wall clock time and date at job start Sun Mar 7 2021 10:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 111.24261 * 2 1 4 4 C 1.89336 * 111.45726 * 125.06461 * 2 1 3 5 5 C 1.55149 * 101.34675 * 120.85644 * 4 2 1 6 6 C 1.53573 * 111.29072 * 331.40973 * 5 4 2 7 7 C 1.52997 * 109.47459 * 169.06502 * 6 5 4 8 8 N 1.46496 * 109.47194 * 66.45249 * 7 6 5 9 9 C 1.34777 * 120.00271 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99854 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00161 * 180.02562 * 9 8 7 12 12 N 1.46505 * 109.47064 * 180.02562 * 11 9 8 13 13 C 1.36827 * 125.06207 * 265.02774 * 12 11 9 14 14 C 1.34240 * 109.93781 * 179.97438 * 13 12 11 15 15 C 1.50695 * 126.50230 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47443 * 104.96893 * 15 14 13 17 17 Si 1.86305 * 109.47146 * 344.96663 * 15 14 13 18 18 H 1.48501 * 109.47006 * 59.99926 * 17 15 14 19 19 H 1.48497 * 109.47256 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46842 * 300.00730 * 17 15 14 21 21 C 1.46491 * 106.99592 * 359.97438 * 14 13 12 22 22 C 1.39592 * 134.03755 * 180.02562 * 21 14 13 23 23 C 1.36663 * 119.76718 * 179.97438 * 22 21 14 24 24 C 1.38788 * 120.52738 * 0.02562 * 23 22 21 25 25 C 1.37791 * 120.66548 * 359.97438 * 24 23 22 26 26 C 1.37692 * 125.05862 * 84.72321 * 12 11 9 27 27 C 1.55922 * 109.50650 * 49.03920 * 6 5 4 28 28 H 1.09005 * 109.47247 * 294.93424 * 1 2 3 29 29 H 1.09004 * 109.47178 * 54.93101 * 1 2 3 30 30 H 1.09001 * 109.47484 * 174.93444 * 1 2 3 31 31 H 1.09001 * 109.47127 * 185.06949 * 3 2 1 32 32 H 1.09000 * 109.46968 * 305.06449 * 3 2 1 33 33 H 1.09000 * 109.47264 * 65.06093 * 3 2 1 34 34 H 1.08993 * 111.05146 * 2.83669 * 4 2 1 35 35 H 1.09000 * 111.08140 * 238.88496 * 4 2 1 36 36 H 1.09002 * 109.12580 * 210.93180 * 5 4 2 37 37 H 1.08997 * 109.12788 * 91.89355 * 5 4 2 38 38 H 1.09003 * 109.47479 * 289.06542 * 6 5 4 39 39 H 1.09002 * 109.47045 * 306.45376 * 7 6 5 40 40 H 1.09001 * 109.47375 * 186.45301 * 7 6 5 41 41 H 0.97005 * 120.00266 * 0.02562 * 8 7 6 42 42 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 43 43 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 44 44 H 1.07994 * 125.03261 * 359.95803 * 13 12 11 45 45 H 1.09002 * 109.46970 * 224.97172 * 15 14 13 46 46 H 0.96703 * 113.99849 * 179.97438 * 16 15 14 47 47 H 1.08001 * 120.11679 * 0.02562 * 22 21 14 48 48 H 1.07994 * 119.73560 * 180.02562 * 23 22 21 49 49 H 1.07999 * 119.66547 * 180.02562 * 24 23 22 50 50 H 1.07999 * 120.10997 * 179.97438 * 25 24 23 51 51 H 1.08996 * 111.41943 * 76.90739 * 27 6 5 52 52 H 1.09001 * 111.42203 * 201.84947 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0123 1.4423 5 6 3.3933 -2.0804 0.6910 6 6 2.8147 -2.3637 -0.7030 7 6 3.8086 -3.2049 -1.5065 8 7 3.9329 -4.5303 -0.8950 9 6 4.7588 -5.4475 -1.4364 10 8 5.3995 -5.1754 -2.4296 11 6 4.8862 -6.8112 -0.8077 12 7 5.8379 -7.6166 -1.5770 13 6 5.5012 -8.4963 -2.5694 14 6 6.6081 -9.0684 -3.0690 15 6 6.6679 -10.0912 -4.1741 16 8 7.1305 -9.4691 -5.3745 17 14 4.9682 -10.7998 -4.4571 18 1 4.0353 -9.7100 -4.8411 19 1 5.0272 -11.8081 -5.5456 20 1 4.4875 -11.4461 -3.2095 21 6 7.7470 -8.5088 -2.3370 22 6 9.1282 -8.7022 -2.3962 23 6 9.9475 -8.0065 -1.5521 24 6 9.4173 -7.1093 -0.6356 25 6 8.0570 -6.9031 -0.5602 26 6 7.2049 -7.5966 -1.4130 27 6 2.5568 -1.0159 -1.4434 28 1 -0.3634 0.4333 0.9319 29 1 -0.3634 0.5905 -0.8411 30 1 -0.3634 -1.0236 -0.0907 31 1 3.6237 1.7042 -0.0908 32 1 2.1193 2.2890 -0.8412 33 1 2.2657 2.2321 0.9318 34 1 1.7533 -1.4764 2.0158 35 1 3.1881 -0.3988 2.0839 36 1 3.3971 -3.0037 1.2704 37 1 4.4175 -1.7224 0.5866 38 1 1.8756 -2.9080 -0.6030 39 1 4.7815 -2.7134 -1.5094 40 1 3.4512 -3.3094 -2.5310 41 1 3.4201 -4.7481 -0.1009 42 1 3.9131 -7.3023 -0.8048 43 1 5.2436 -6.7070 0.2167 44 1 4.4941 -8.7004 -2.9015 45 1 7.3526 -10.8910 -3.8922 46 1 7.1942 -10.0699 -6.1296 47 1 9.5479 -9.3984 -3.1072 48 1 11.0160 -8.1562 -1.5987 49 1 10.0777 -6.5666 0.0246 50 1 7.6541 -6.2030 0.1568 51 1 3.4838 -0.5866 -1.8231 52 1 1.8202 -1.1330 -2.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17310366_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:24:44 Heat of formation + Delta-G solvation = -51.845195 kcal Electronic energy + Delta-G solvation = -29675.681747 eV Core-core repulsion = 25763.618607 eV Total energy + Delta-G solvation = -3912.063140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39671 -40.61971 -38.11591 -37.82434 -37.40940 -34.75632 -34.03429 -31.45874 -30.62692 -30.11378 -29.33442 -29.03144 -28.59066 -26.89506 -25.36510 -24.15436 -23.53125 -22.49605 -21.57565 -20.92823 -20.37992 -18.49833 -18.29984 -18.09996 -17.62162 -16.90012 -16.60136 -16.27305 -16.01523 -15.81124 -15.64750 -15.09926 -14.86564 -14.77027 -14.63304 -14.50434 -14.42091 -14.21507 -14.05644 -14.01644 -13.90540 -13.64338 -13.50085 -13.47807 -13.37780 -13.14026 -12.73007 -12.60572 -12.40197 -12.36881 -12.33004 -12.10381 -12.03256 -11.88135 -11.59672 -11.53475 -11.08272 -10.97882 -10.59445 -10.51025 -10.32948 -10.13654 -10.09612 -8.95118 -8.45601 0.34044 0.86225 1.24072 1.41397 1.48584 1.49621 1.51423 1.58676 1.75504 1.78829 1.81672 1.97020 2.21540 2.44181 3.16220 3.51951 3.54706 3.68639 3.76159 3.80290 3.86982 3.88526 3.92971 3.94266 4.14805 4.36816 4.37528 4.39792 4.41557 4.46623 4.50776 4.60370 4.62078 4.64423 4.65721 4.67385 4.76421 4.82947 4.85426 4.92646 4.97044 5.01824 5.05363 5.13573 5.24254 5.31709 5.31894 5.35505 5.41711 5.43677 5.70922 5.86982 5.92505 5.96239 6.23033 6.38512 6.44467 6.80822 7.10481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.968 3.032 3 C -0.444 4.444 4 C -0.399 4.399 5 C -0.111 4.111 6 C -0.097 4.097 7 C 0.128 3.872 8 N -0.729 5.729 9 C 0.488 3.512 10 O -0.512 6.512 11 C 0.091 3.909 12 N -0.466 5.466 13 C 0.065 3.935 14 C -0.155 4.155 15 C -0.043 4.043 16 O -0.544 6.544 17 Si 0.941 3.059 18 H -0.250 1.250 19 H -0.253 1.253 20 H -0.249 1.249 21 C -0.084 4.084 22 C -0.064 4.064 23 C -0.146 4.146 24 C -0.097 4.097 25 C -0.127 4.127 26 C 0.109 3.891 27 C -0.392 4.392 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.401 0.599 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.165 0.835 45 H 0.071 0.929 46 H 0.375 0.625 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.114 0.886 51 H 0.083 0.917 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -0.031 4.215 6.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.166 2.834 3 C -0.552 4.552 4 C -0.485 4.485 5 C -0.149 4.149 6 C -0.116 4.116 7 C 0.005 3.995 8 N -0.383 5.383 9 C 0.271 3.729 10 O -0.386 6.386 11 C -0.035 4.035 12 N -0.149 5.149 13 C -0.060 4.060 14 C -0.162 4.162 15 C -0.154 4.154 16 O -0.349 6.349 17 Si 0.763 3.237 18 H -0.173 1.173 19 H -0.177 1.177 20 H -0.173 1.173 21 C -0.088 4.088 22 C -0.083 4.083 23 C -0.165 4.165 24 C -0.117 4.117 25 C -0.148 4.148 26 C 0.005 3.995 27 C -0.478 4.478 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.235 0.765 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.182 0.818 45 H 0.089 0.911 46 H 0.222 0.778 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.132 0.868 51 H 0.102 0.898 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.923 0.553 3.896 6.302 hybrid contribution 0.077 -0.321 0.127 0.354 sum -4.846 0.232 4.024 6.303 Atomic orbital electron populations 1.26026 1.19957 1.04533 1.04566 0.80505 0.67523 0.67512 0.67875 1.26026 1.06671 1.17968 1.04509 1.26497 1.05165 1.06664 1.10185 1.21770 0.99869 0.99166 0.94080 1.21882 0.98521 0.96515 0.94671 1.21507 0.99806 0.81262 0.96948 1.46048 1.45890 1.14330 1.32064 1.21004 0.80082 0.86678 0.85138 1.90830 1.43748 1.79373 1.24606 1.21594 0.95402 0.90016 0.96471 1.43160 1.04189 1.35298 1.32262 1.21460 0.99154 0.93420 0.91945 1.19440 0.91498 1.04535 1.00712 1.23955 1.09458 0.96774 0.85178 1.86595 1.89530 1.39448 1.19328 0.85897 0.76699 0.79645 0.81493 1.17348 1.17678 1.17280 1.18917 0.93186 0.99083 0.97661 1.20273 0.90948 0.98946 0.98110 1.20654 0.99742 0.98645 0.97497 1.20811 0.93762 0.98293 0.98797 1.19947 0.92760 1.01624 1.00447 1.18158 0.82283 0.99695 0.99361 1.26770 1.06828 1.03852 1.10327 0.91086 0.91123 0.91134 0.91026 0.91121 0.91151 0.90534 0.90290 0.92099 0.91648 0.90258 0.91215 0.91222 0.76481 0.86051 0.86416 0.81755 0.91061 0.77833 0.85966 0.85939 0.85756 0.86754 0.89838 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.10 8.65 101.05 0.87 1.98 16 2 Si 0.97 -3.49 13.36 -169.99 -2.27 -5.76 16 3 C -0.44 0.93 8.65 101.05 0.87 1.80 16 4 C -0.40 1.12 5.85 38.29 0.22 1.34 16 5 C -0.11 0.29 5.17 -25.30 -0.13 0.16 16 6 C -0.10 0.24 2.19 -88.76 -0.19 0.05 16 7 C 0.13 -0.05 5.05 -4.05 -0.02 -0.07 16 8 N -0.73 1.03 5.37 -60.30 -0.32 0.71 16 9 C 0.49 0.75 7.90 -10.98 -0.09 0.66 16 10 O -0.51 -3.60 16.42 5.56 0.09 -3.51 16 11 C 0.09 -0.10 6.48 -5.19 -0.03 -0.13 16 12 N -0.47 -1.36 2.27 -115.71 -0.26 -1.62 16 13 C 0.06 0.20 9.89 -16.73 -0.17 0.04 16 14 C -0.15 -0.65 5.61 -102.71 -0.58 -1.23 16 15 C -0.04 -0.07 3.05 36.00 0.11 0.03 16 16 O -0.54 -1.47 12.86 -35.23 -0.45 -1.92 16 17 Si 0.94 0.26 26.08 -169.99 -4.43 -4.18 16 18 H -0.25 -0.36 7.03 56.52 0.40 0.04 16 19 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 20 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 21 C -0.08 -0.46 6.35 -105.14 -0.67 -1.12 16 22 C -0.06 -0.27 10.05 -39.65 -0.40 -0.67 16 23 C -0.15 -0.46 9.97 -39.95 -0.40 -0.86 16 24 C -0.10 -0.28 10.01 -39.54 -0.40 -0.68 16 25 C -0.13 -0.44 10.00 -39.43 -0.39 -0.84 16 26 C 0.11 0.52 6.80 -83.99 -0.57 -0.05 16 27 C -0.39 0.97 5.29 38.72 0.20 1.18 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.08 -0.22 8.04 -51.93 -0.42 -0.64 16 35 H 0.08 -0.19 8.04 -51.93 -0.42 -0.61 16 36 H 0.06 -0.19 7.55 -51.93 -0.39 -0.59 16 37 H 0.06 -0.12 8.04 -51.93 -0.42 -0.53 16 38 H 0.08 -0.26 8.13 -51.93 -0.42 -0.69 16 39 H 0.07 0.07 8.07 -51.93 -0.42 -0.35 16 40 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.40 -1.83 7.84 -40.82 -0.32 -2.15 16 42 H 0.12 -0.54 8.12 -51.93 -0.42 -0.96 16 43 H 0.12 -0.41 8.14 -51.93 -0.42 -0.84 16 44 H 0.17 0.08 6.29 -52.49 -0.33 -0.25 16 45 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 46 H 0.38 -0.82 8.74 45.56 0.40 -0.42 16 47 H 0.12 0.33 8.06 -52.49 -0.42 -0.09 16 48 H 0.12 0.12 8.06 -52.49 -0.42 -0.30 16 49 H 0.12 0.07 8.06 -52.49 -0.42 -0.35 16 50 H 0.11 0.17 8.06 -52.49 -0.42 -0.25 16 51 H 0.08 -0.17 8.03 -51.93 -0.42 -0.58 16 52 H 0.08 -0.20 8.06 -51.93 -0.42 -0.62 16 LS Contribution 423.76 15.07 6.39 6.39 Total: 0.00 -10.76 423.76 -11.24 -21.99 By element: Atomic # 1 Polarization: -5.46 SS G_CDS: -8.23 Total: -13.69 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.75 Total: 1.58 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -0.59 Total: -0.91 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.36 Total: -5.43 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: -6.70 Total: -9.94 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -10.76 -11.24 -21.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.851 kcal (2) G-P(sol) polarization free energy of solvation -10.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds