Wall clock time and date at job start Sun Mar 7 2021 10:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 111.24261 * 2 1 4 4 C 1.89336 * 111.45726 * 125.06461 * 2 1 3 5 5 C 1.55149 * 101.34675 * 120.85644 * 4 2 1 6 6 C 1.53573 * 111.29072 * 331.40973 * 5 4 2 7 7 C 1.52997 * 109.47459 * 169.06502 * 6 5 4 8 8 N 1.46496 * 109.47194 * 66.45249 * 7 6 5 9 9 C 1.34777 * 120.00271 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99854 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00161 * 180.02562 * 9 8 7 12 12 N 1.46505 * 109.47064 * 180.02562 * 11 9 8 13 13 C 1.36827 * 125.06207 * 265.02774 * 12 11 9 14 14 C 1.34240 * 109.93781 * 179.97438 * 13 12 11 15 15 C 1.50695 * 126.50230 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47443 * 104.96893 * 15 14 13 17 17 Si 1.86305 * 109.47146 * 344.96663 * 15 14 13 18 18 H 1.48501 * 109.47006 * 59.99926 * 17 15 14 19 19 H 1.48497 * 109.47256 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46842 * 300.00730 * 17 15 14 21 21 C 1.46491 * 106.99592 * 359.97438 * 14 13 12 22 22 C 1.39592 * 134.03755 * 180.02562 * 21 14 13 23 23 C 1.36663 * 119.76718 * 179.97438 * 22 21 14 24 24 C 1.38788 * 120.52738 * 0.02562 * 23 22 21 25 25 C 1.37791 * 120.66548 * 359.97438 * 24 23 22 26 26 C 1.37692 * 125.05862 * 84.72321 * 12 11 9 27 27 C 1.55922 * 109.50650 * 49.03920 * 6 5 4 28 28 H 1.09005 * 109.47247 * 294.93424 * 1 2 3 29 29 H 1.09004 * 109.47178 * 54.93101 * 1 2 3 30 30 H 1.09001 * 109.47484 * 174.93444 * 1 2 3 31 31 H 1.09001 * 109.47127 * 185.06949 * 3 2 1 32 32 H 1.09000 * 109.46968 * 305.06449 * 3 2 1 33 33 H 1.09000 * 109.47264 * 65.06093 * 3 2 1 34 34 H 1.08993 * 111.05146 * 2.83669 * 4 2 1 35 35 H 1.09000 * 111.08140 * 238.88496 * 4 2 1 36 36 H 1.09002 * 109.12580 * 210.93180 * 5 4 2 37 37 H 1.08997 * 109.12788 * 91.89355 * 5 4 2 38 38 H 1.09003 * 109.47479 * 289.06542 * 6 5 4 39 39 H 1.09002 * 109.47045 * 306.45376 * 7 6 5 40 40 H 1.09001 * 109.47375 * 186.45301 * 7 6 5 41 41 H 0.97005 * 120.00266 * 0.02562 * 8 7 6 42 42 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 43 43 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 44 44 H 1.07994 * 125.03261 * 359.95803 * 13 12 11 45 45 H 1.09002 * 109.46970 * 224.97172 * 15 14 13 46 46 H 0.96703 * 113.99849 * 179.97438 * 16 15 14 47 47 H 1.08001 * 120.11679 * 0.02562 * 22 21 14 48 48 H 1.07994 * 119.73560 * 180.02562 * 23 22 21 49 49 H 1.07999 * 119.66547 * 180.02562 * 24 23 22 50 50 H 1.07999 * 120.10997 * 179.97438 * 25 24 23 51 51 H 1.08996 * 111.41943 * 76.90739 * 27 6 5 52 52 H 1.09001 * 111.42203 * 201.84947 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5380 1.7364 0.0000 4 6 2.5556 -1.0123 1.4423 5 6 3.3933 -2.0804 0.6910 6 6 2.8147 -2.3637 -0.7030 7 6 3.8086 -3.2049 -1.5065 8 7 3.9329 -4.5303 -0.8950 9 6 4.7588 -5.4475 -1.4364 10 8 5.3995 -5.1754 -2.4296 11 6 4.8862 -6.8112 -0.8077 12 7 5.8379 -7.6166 -1.5770 13 6 5.5012 -8.4963 -2.5694 14 6 6.6081 -9.0684 -3.0690 15 6 6.6679 -10.0912 -4.1741 16 8 7.1305 -9.4691 -5.3745 17 14 4.9682 -10.7998 -4.4571 18 1 4.0353 -9.7100 -4.8411 19 1 5.0272 -11.8081 -5.5456 20 1 4.4875 -11.4461 -3.2095 21 6 7.7470 -8.5088 -2.3370 22 6 9.1282 -8.7022 -2.3962 23 6 9.9475 -8.0065 -1.5521 24 6 9.4173 -7.1093 -0.6356 25 6 8.0570 -6.9031 -0.5602 26 6 7.2049 -7.5966 -1.4130 27 6 2.5568 -1.0159 -1.4434 28 1 -0.3634 0.4333 0.9319 29 1 -0.3634 0.5905 -0.8411 30 1 -0.3634 -1.0236 -0.0907 31 1 3.6237 1.7042 -0.0908 32 1 2.1193 2.2890 -0.8412 33 1 2.2657 2.2321 0.9318 34 1 1.7533 -1.4764 2.0158 35 1 3.1881 -0.3988 2.0839 36 1 3.3971 -3.0037 1.2704 37 1 4.4175 -1.7224 0.5866 38 1 1.8756 -2.9080 -0.6030 39 1 4.7815 -2.7134 -1.5094 40 1 3.4512 -3.3094 -2.5310 41 1 3.4201 -4.7481 -0.1009 42 1 3.9131 -7.3023 -0.8048 43 1 5.2436 -6.7070 0.2167 44 1 4.4941 -8.7004 -2.9015 45 1 7.3526 -10.8910 -3.8922 46 1 7.1942 -10.0699 -6.1296 47 1 9.5479 -9.3984 -3.1072 48 1 11.0160 -8.1562 -1.5987 49 1 10.0777 -6.5666 0.0246 50 1 7.6541 -6.2030 0.1568 51 1 3.4838 -0.5866 -1.8231 52 1 1.8202 -1.1330 -2.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17310366_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 10:24:43 Heat of formation + Delta-G solvation = -48.150702 kcal Electronic energy + Delta-G solvation = -29675.521542 eV Core-core repulsion = 25763.618607 eV Total energy + Delta-G solvation = -3911.902935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54058 -40.73715 -38.16133 -37.90476 -37.52528 -34.79081 -34.13294 -31.57494 -30.53441 -30.28615 -29.17391 -29.02659 -28.38741 -26.86777 -25.42105 -24.02373 -23.70024 -22.66757 -21.64041 -20.80252 -20.52542 -18.53775 -18.40811 -18.19467 -17.74173 -16.89591 -16.65986 -16.43510 -15.96957 -15.85502 -15.72001 -15.11958 -14.89469 -14.79457 -14.71477 -14.60739 -14.49732 -14.30689 -13.88011 -13.82723 -13.77121 -13.62365 -13.45172 -13.33053 -13.21058 -13.10551 -12.71657 -12.58575 -12.54227 -12.48513 -12.21527 -12.12630 -11.96585 -11.88516 -11.68611 -11.40440 -11.24395 -10.77353 -10.58133 -10.38925 -10.32355 -10.17393 -10.15310 -9.17006 -8.64015 0.12751 0.63704 1.20310 1.33174 1.42431 1.48796 1.56656 1.70220 1.75440 1.93274 1.99160 2.04377 2.21387 2.64330 2.94225 3.56670 3.58902 3.69386 3.78470 3.81679 3.86369 4.01422 4.03712 4.06975 4.09772 4.23151 4.28678 4.41417 4.50204 4.57852 4.60113 4.62626 4.69927 4.76032 4.78809 4.79256 4.80577 4.82373 4.85351 4.87101 4.90362 5.11262 5.14212 5.22423 5.28282 5.35731 5.50776 5.51077 5.54626 5.59916 5.63898 5.65795 5.73378 5.74683 6.15415 6.22753 6.44698 6.91455 7.10838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.039 2.961 3 C -0.463 4.463 4 C -0.406 4.406 5 C -0.113 4.113 6 C -0.090 4.090 7 C 0.129 3.871 8 N -0.711 5.711 9 C 0.486 3.514 10 O -0.576 6.576 11 C 0.088 3.912 12 N -0.468 5.468 13 C 0.059 3.941 14 C -0.182 4.182 15 C -0.055 4.055 16 O -0.570 6.570 17 Si 0.988 3.012 18 H -0.268 1.268 19 H -0.251 1.251 20 H -0.249 1.249 21 C -0.117 4.117 22 C -0.084 4.084 23 C -0.153 4.153 24 C -0.106 4.106 25 C -0.136 4.136 26 C 0.089 3.911 27 C -0.409 4.409 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.420 0.580 42 H 0.161 0.839 43 H 0.147 0.853 44 H 0.187 0.813 45 H 0.080 0.920 46 H 0.393 0.607 47 H 0.126 0.874 48 H 0.141 0.859 49 H 0.147 0.853 50 H 0.131 0.869 51 H 0.073 0.927 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -0.522 5.729 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.232 2.768 3 C -0.570 4.570 4 C -0.491 4.491 5 C -0.150 4.150 6 C -0.109 4.109 7 C 0.005 3.995 8 N -0.365 5.365 9 C 0.272 3.728 10 O -0.454 6.454 11 C -0.037 4.037 12 N -0.151 5.151 13 C -0.066 4.066 14 C -0.190 4.190 15 C -0.164 4.164 16 O -0.378 6.378 17 Si 0.810 3.190 18 H -0.192 1.192 19 H -0.175 1.175 20 H -0.173 1.173 21 C -0.121 4.121 22 C -0.102 4.102 23 C -0.172 4.172 24 C -0.125 4.125 25 C -0.157 4.157 26 C -0.016 4.016 27 C -0.494 4.494 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.258 0.742 42 H 0.179 0.821 43 H 0.164 0.836 44 H 0.204 0.796 45 H 0.098 0.902 46 H 0.242 0.758 47 H 0.144 0.856 48 H 0.159 0.841 49 H 0.165 0.835 50 H 0.149 0.851 51 H 0.092 0.908 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.383 0.065 5.445 8.390 hybrid contribution 0.548 -0.088 -0.355 0.659 sum -5.835 -0.022 5.090 7.743 Atomic orbital electron populations 1.26171 1.20872 1.04716 1.04467 0.79425 0.65928 0.65302 0.66110 1.26276 1.06551 1.19766 1.04381 1.26575 1.05331 1.06749 1.10495 1.21777 0.99340 0.99890 0.94014 1.21868 0.98452 0.96172 0.94364 1.21439 0.99379 0.81903 0.96735 1.45919 1.44964 1.13450 1.32119 1.21510 0.79253 0.87775 0.84277 1.90809 1.46442 1.80633 1.27548 1.21989 0.96700 0.88180 0.96810 1.43395 1.04135 1.35269 1.32276 1.21888 0.99902 0.93066 0.91744 1.19878 0.91626 1.05700 1.01760 1.24253 1.11415 0.96333 0.84380 1.86537 1.89852 1.41032 1.20423 0.85221 0.74294 0.78408 0.81120 1.19227 1.17460 1.17291 1.19355 0.94033 1.00080 0.98651 1.20485 0.91124 0.99735 0.98877 1.20947 1.00647 0.98406 0.97221 1.21153 0.94085 0.98257 0.98990 1.20244 0.93055 1.01731 1.00655 1.18459 0.83470 0.99971 0.99710 1.26974 1.06630 1.04484 1.11266 0.91046 0.91444 0.90771 0.91535 0.91436 0.91145 0.89755 0.90503 0.90931 0.92717 0.88579 0.93171 0.93001 0.74249 0.82147 0.83563 0.79616 0.90161 0.75773 0.85567 0.84143 0.83534 0.85065 0.90774 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.67 8.65 113.37 0.98 3.65 16 2 Si 1.04 -8.00 13.36 68.60 0.92 -7.09 16 3 C -0.46 1.79 8.65 113.37 0.98 2.77 16 4 C -0.41 2.75 5.85 72.72 0.43 3.17 16 5 C -0.11 0.68 5.17 31.52 0.16 0.84 16 6 C -0.09 0.49 2.19 -9.59 -0.02 0.47 16 7 C 0.13 0.00 5.05 86.38 0.44 0.44 16 8 N -0.71 2.34 5.37 -463.07 -2.49 -0.15 16 9 C 0.49 1.56 7.90 87.66 0.69 2.26 16 10 O -0.58 -9.17 16.42 -3.02 -0.05 -9.22 16 11 C 0.09 -0.29 6.48 85.63 0.55 0.26 16 12 N -0.47 -2.84 2.27 -519.98 -1.18 -4.02 16 13 C 0.06 0.40 9.89 83.00 0.82 1.22 16 14 C -0.18 -1.79 5.61 -18.63 -0.10 -1.90 16 15 C -0.05 -0.25 3.05 71.23 0.22 -0.03 16 16 O -0.57 -3.89 12.86 -148.98 -1.92 -5.81 16 17 Si 0.99 0.35 26.08 68.60 1.79 2.14 16 18 H -0.27 -0.80 7.03 99.48 0.70 -0.10 16 19 H -0.25 0.08 7.11 99.48 0.71 0.78 16 20 H -0.25 -0.03 7.11 99.48 0.71 0.68 16 21 C -0.12 -1.48 6.35 -20.20 -0.13 -1.61 16 22 C -0.08 -0.87 10.05 22.23 0.22 -0.65 16 23 C -0.15 -1.12 9.97 22.03 0.22 -0.90 16 24 C -0.11 -0.66 10.01 22.30 0.22 -0.44 16 25 C -0.14 -1.03 10.00 22.37 0.22 -0.81 16 26 C 0.09 0.94 6.80 39.03 0.27 1.20 16 27 C -0.41 1.92 5.29 72.99 0.39 2.31 16 28 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 29 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 30 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 31 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.08 -0.66 8.04 -2.39 -0.02 -0.68 16 35 H 0.08 -0.44 8.04 -2.39 -0.02 -0.46 16 36 H 0.07 -0.60 7.55 -2.39 -0.02 -0.62 16 37 H 0.05 -0.19 8.04 -2.39 -0.02 -0.21 16 38 H 0.10 -0.81 8.13 -2.39 -0.02 -0.83 16 39 H 0.05 0.21 8.07 -2.39 -0.02 0.19 16 40 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.42 -4.61 7.84 -92.70 -0.73 -5.34 16 42 H 0.16 -1.84 8.12 -2.39 -0.02 -1.86 16 43 H 0.15 -1.34 8.14 -2.39 -0.02 -1.36 16 44 H 0.19 0.15 6.29 -2.91 -0.02 0.13 16 45 H 0.08 0.12 7.96 -2.39 -0.02 0.10 16 46 H 0.39 -1.32 8.74 -74.06 -0.65 -1.96 16 47 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 48 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 49 H 0.15 0.11 8.06 -2.91 -0.02 0.08 16 50 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 51 H 0.07 -0.20 8.03 -2.39 -0.02 -0.22 16 52 H 0.08 -0.39 8.06 -2.39 -0.02 -0.41 16 Total: 0.00 -28.07 423.76 3.92 -24.16 By element: Atomic # 1 Polarization: -12.56 SS G_CDS: 0.28 Total: -12.28 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.56 Total: 12.26 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -3.67 Total: -4.17 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.96 Total: -15.02 kcal Atomic # 14 Polarization: -7.65 SS G_CDS: 2.71 Total: -4.94 kcal Total: -28.07 3.92 -24.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17310366_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.995 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds