Wall clock time and date at job start Sun Mar 7 2021 08:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46828 * 2 1 4 4 C 1.52997 * 109.47239 * 240.00166 * 2 1 3 5 5 Si 1.86295 * 109.47039 * 120.00013 * 2 1 3 6 6 C 1.86304 * 109.47134 * 299.99915 * 5 2 1 7 7 C 1.86298 * 109.46955 * 180.02562 * 5 2 1 8 8 O 1.63094 * 109.47448 * 60.00055 * 5 2 1 9 9 C 1.35895 * 114.00348 * 179.97438 * 8 5 2 10 10 C 1.38768 * 120.01903 * 270.02300 * 9 8 5 11 11 C 1.38214 * 120.08227 * 179.97438 * 10 9 8 12 12 C 1.38115 * 120.12712 * 359.72331 * 11 10 9 13 13 C 1.38936 * 120.04048 * 0.55136 * 12 11 10 14 14 N 1.39917 * 120.04450 * 179.72006 * 13 12 11 15 15 C 1.34773 * 120.00122 * 214.82431 * 14 13 12 16 16 O 1.21294 * 120.00138 * 355.37756 * 15 14 13 17 17 C 1.50699 * 120.00427 * 175.38314 * 15 14 13 18 18 C 1.50692 * 109.47634 * 179.97438 * 17 15 14 19 19 C 1.34853 * 125.88963 * 274.69034 * 18 17 15 20 20 C 1.40901 * 107.41645 * 179.88210 * 19 18 17 21 21 C 1.34854 * 107.41680 * 0.37808 * 20 19 18 22 22 C 1.50693 * 125.89210 * 179.73252 * 21 20 19 23 23 O 1.42903 * 109.47174 * 120.04486 * 22 21 20 24 24 Si 1.86302 * 109.47089 * 0.04220 * 22 21 20 25 25 H 1.48495 * 109.47045 * 60.00058 * 24 22 21 26 26 H 1.48503 * 109.47255 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46998 * 299.99968 * 24 22 21 28 28 N 1.36343 * 108.21604 * 359.77160 * 21 20 19 29 29 C 1.38620 * 120.02406 * 89.99909 * 9 8 5 30 30 H 1.09003 * 109.47182 * 299.99809 * 1 2 3 31 31 H 1.09003 * 109.47443 * 60.00140 * 1 2 3 32 32 H 1.09005 * 109.47064 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47188 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47474 * 299.99908 * 3 2 1 35 35 H 1.09002 * 109.47783 * 59.99865 * 3 2 1 36 36 H 1.09005 * 109.46746 * 299.99771 * 4 2 1 37 37 H 1.09003 * 109.47153 * 59.99517 * 4 2 1 38 38 H 1.08995 * 109.47650 * 180.02562 * 4 2 1 39 39 H 1.09004 * 109.47002 * 179.97438 * 6 5 2 40 40 H 1.08996 * 109.47112 * 300.00520 * 6 5 2 41 41 H 1.08997 * 109.46849 * 60.00409 * 6 5 2 42 42 H 1.09002 * 109.47334 * 299.99582 * 7 5 2 43 43 H 1.09001 * 109.47637 * 60.00009 * 7 5 2 44 44 H 1.09003 * 109.47359 * 179.97438 * 7 5 2 45 45 H 1.08005 * 119.95935 * 0.02562 * 10 9 8 46 46 H 1.08006 * 119.93279 * 180.02562 * 11 10 9 47 47 H 1.08002 * 119.98362 * 180.27968 * 12 11 10 48 48 H 0.97003 * 119.99860 * 34.81786 * 14 13 12 49 49 H 1.08997 * 109.46875 * 59.99517 * 17 15 14 50 50 H 1.08996 * 109.46977 * 300.00097 * 17 15 14 51 51 H 1.07995 * 126.29183 * 0.02562 * 19 18 17 52 52 H 1.07998 * 126.29068 * 180.12700 * 20 19 18 53 53 H 1.09001 * 109.47324 * 240.04646 * 22 21 20 54 54 H 0.96701 * 113.99867 * 299.99655 * 23 22 21 55 55 H 0.97004 * 125.63233 * 179.97438 * 28 21 20 56 56 H 1.08005 * 120.06205 * 0.04621 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0139 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5212 9 6 2.0088 -3.1441 2.5960 10 6 3.1949 -3.8625 2.5441 11 6 3.6047 -4.6031 3.6367 12 6 2.8382 -4.6262 4.7855 13 6 1.6469 -3.9134 4.8411 14 7 0.8675 -3.9414 6.0028 15 6 -0.4768 -3.9069 5.9133 16 8 -1.0093 -3.7672 4.8325 17 6 -1.3185 -4.0419 7.1560 18 6 -2.7773 -3.9708 6.7850 19 6 -3.5008 -2.8427 6.6349 20 6 -4.8109 -3.2254 6.2850 21 6 -4.8401 -4.5730 6.2428 22 6 -6.0421 -5.4207 5.9148 23 8 -5.7630 -6.2170 4.7615 24 14 -7.5039 -4.3185 5.5697 25 1 -7.1947 -3.4320 4.4193 26 1 -8.6882 -5.1539 5.2460 27 1 -7.7938 -3.4912 6.7683 28 7 -3.5948 -5.0361 6.5488 29 6 1.2340 -3.1694 3.7452 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2491 39 1 1.8929 -0.5141 3.9323 40 1 1.8932 1.0277 3.0422 41 1 0.4400 0.0000 3.0422 42 1 4.3777 -1.3911 0.6315 43 1 4.3770 0.1503 1.5217 44 1 4.3773 -1.3910 2.4117 45 1 3.7990 -3.8422 1.6490 46 1 4.5285 -5.1610 3.5938 47 1 3.1629 -5.2021 5.6395 48 1 1.2947 -3.9857 6.8725 49 1 -1.0796 -3.2327 7.8462 50 1 -1.1108 -4.9995 7.6333 51 1 -3.1415 -1.8318 6.7579 52 1 -5.6404 -2.5616 6.0907 53 1 -6.2691 -6.0714 6.7593 54 1 -5.5521 -5.7027 3.9702 55 1 -3.3337 -5.9693 6.5918 56 1 0.3103 -2.6112 3.7873 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17313436_14644196.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:28 Heat of formation + Delta-G solvation = -84.676327 kcal Electronic energy + Delta-G solvation = -34686.952939 eV Core-core repulsion = 30299.246323 eV Total energy + Delta-G solvation = -4387.706616 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 390.193 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.41530 -41.55968 -40.16950 -37.90869 -37.67117 -36.92196 -35.50320 -33.31960 -31.96792 -31.22206 -30.50523 -29.35323 -29.25718 -28.92682 -27.90286 -27.45329 -25.42921 -24.00799 -23.36563 -21.81314 -21.40390 -21.05498 -20.57871 -19.50413 -18.87419 -18.26009 -17.37314 -17.27505 -16.94494 -16.76373 -16.40255 -16.24513 -16.13348 -15.83005 -15.50739 -15.18078 -14.92760 -14.88318 -14.83315 -14.62187 -14.29022 -14.19046 -14.08619 -14.01043 -13.93452 -13.65620 -13.49033 -13.45776 -13.36518 -13.23672 -13.02185 -12.96497 -12.80262 -12.65171 -12.48195 -12.27929 -12.25533 -12.19054 -12.05388 -11.80718 -11.72968 -11.71260 -11.31545 -10.94992 -10.64061 -10.55332 -10.16565 -9.83269 -9.59499 -9.13028 -8.98996 0.16018 0.31466 1.01943 1.17563 1.31462 1.51381 1.52782 1.55409 1.63365 1.79652 1.89715 1.96604 2.18783 2.33444 2.46547 2.81912 3.48955 3.58832 3.80608 3.87728 3.99985 4.04279 4.05010 4.14584 4.18907 4.21771 4.32807 4.40463 4.41983 4.50095 4.53372 4.57513 4.63327 4.64754 4.67950 4.74409 4.75749 4.76021 4.76531 4.78792 4.93318 5.03198 5.03703 5.13707 5.19694 5.23451 5.25803 5.27529 5.30134 5.33839 5.37979 5.41796 5.47220 5.49969 5.57638 5.61468 5.94490 6.08530 6.14722 6.38106 6.55542 6.66154 7.10099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.373 4.373 3 C -0.140 4.140 4 C -0.139 4.139 5 Si 1.289 2.711 6 C -0.509 4.509 7 C -0.501 4.501 8 O -0.579 6.579 9 C 0.131 3.869 10 C -0.183 4.183 11 C -0.075 4.075 12 C -0.159 4.159 13 C 0.157 3.843 14 N -0.660 5.660 15 C 0.507 3.493 16 O -0.550 6.550 17 C -0.062 4.062 18 C 0.032 3.968 19 C -0.199 4.199 20 C -0.216 4.216 21 C -0.015 4.015 22 C -0.060 4.060 23 O -0.557 6.557 24 Si 1.013 2.987 25 H -0.265 1.265 26 H -0.269 1.269 27 H -0.255 1.255 28 N -0.532 5.532 29 C -0.183 4.183 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.433 0.567 49 H 0.150 0.850 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.139 0.861 53 H 0.128 0.872 54 H 0.388 0.612 55 H 0.422 0.578 56 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -0.602 5.932 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.417 4.417 3 C -0.197 4.197 4 C -0.196 4.196 5 Si 1.424 2.576 6 C -0.611 4.611 7 C -0.605 4.605 8 O -0.533 6.533 9 C 0.087 3.913 10 C -0.202 4.202 11 C -0.094 4.094 12 C -0.179 4.179 13 C 0.062 3.938 14 N -0.308 5.308 15 C 0.296 3.704 16 O -0.427 6.427 17 C -0.102 4.102 18 C -0.082 4.082 19 C -0.223 4.223 20 C -0.241 4.241 21 C -0.129 4.129 22 C -0.170 4.170 23 O -0.364 6.364 24 Si 0.836 3.164 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.179 1.179 28 N -0.127 5.127 29 C -0.204 4.204 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.160 0.840 46 H 0.179 0.821 47 H 0.178 0.822 48 H 0.273 0.727 49 H 0.168 0.832 50 H 0.155 0.845 51 H 0.157 0.843 52 H 0.156 0.844 53 H 0.146 0.854 54 H 0.237 0.763 55 H 0.260 0.740 56 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.001 -0.807 5.318 6.704 hybrid contribution 0.476 0.309 -0.190 0.598 sum 4.477 -0.499 5.127 6.825 Atomic orbital electron populations 1.21569 0.94583 1.01416 1.02127 1.25750 1.00087 1.03454 1.12424 1.21606 1.01654 0.93976 1.02500 1.21568 1.01470 0.99759 0.96781 0.76888 0.64312 0.51492 0.64956 1.27045 1.06311 1.09994 1.17738 1.26892 1.22841 1.05651 1.05126 1.83789 1.78744 1.46274 1.44492 1.18087 0.93029 0.95076 0.85076 1.21534 0.96344 1.01036 1.01286 1.21205 1.00137 0.96781 0.91238 1.21250 0.94859 1.00957 1.00845 1.17655 0.92602 0.95975 0.87568 1.43414 1.05610 1.72950 1.08837 1.21372 0.82296 0.74985 0.91756 1.90790 1.72870 1.47756 1.31236 1.20248 0.86299 1.08848 0.94810 1.19841 0.92790 0.86991 1.08548 1.20824 0.94090 0.98085 1.09314 1.20882 0.98842 0.93772 1.10643 1.20985 0.88074 0.94148 1.09712 1.24826 1.00233 1.00438 0.91490 1.86447 1.92458 1.36827 1.20640 0.84759 0.74542 0.76464 0.80679 1.18871 1.19387 1.17902 1.41846 1.08347 1.08871 1.53667 1.21317 1.01966 1.03352 0.93742 0.92373 0.92451 0.93374 0.91182 0.92500 0.91895 0.93038 0.92641 0.91357 0.91645 0.89476 0.91973 0.90279 0.89480 0.90848 0.83998 0.82112 0.82238 0.72718 0.83242 0.84474 0.84289 0.84363 0.85389 0.76291 0.74014 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 7.85 71.98 0.56 -0.05 16 2 C -0.37 -0.81 0.53 -10.80 -0.01 -0.82 16 3 C -0.14 0.03 7.85 71.98 0.56 0.59 16 4 C -0.14 -0.30 7.85 71.98 0.56 0.27 16 5 Si 1.29 2.68 8.27 68.60 0.57 3.25 16 6 C -0.51 -1.66 8.31 113.37 0.94 -0.72 16 7 C -0.50 0.21 8.31 113.37 0.94 1.15 16 8 O -0.58 -4.63 8.52 -92.37 -0.79 -5.42 16 9 C 0.13 0.97 4.63 22.49 0.10 1.07 16 10 C -0.18 -0.50 8.77 22.39 0.20 -0.31 16 11 C -0.08 0.12 10.03 22.23 0.22 0.34 16 12 C -0.16 0.34 9.96 22.41 0.22 0.57 16 13 C 0.16 0.37 6.30 38.14 0.24 0.61 16 14 N -0.66 2.13 5.34 -303.55 -1.62 0.51 16 15 C 0.51 0.69 7.67 87.66 0.67 1.36 16 16 O -0.55 -6.72 13.47 -3.07 -0.04 -6.76 16 17 C -0.06 0.36 6.24 29.10 0.18 0.54 16 18 C 0.03 0.07 5.66 41.08 0.23 0.30 16 19 C -0.20 -1.13 10.77 22.14 0.24 -0.89 16 20 C -0.22 -1.34 9.37 22.14 0.21 -1.13 16 21 C -0.02 -0.06 6.50 41.08 0.27 0.21 16 22 C -0.06 -0.06 3.08 71.23 0.22 0.16 16 23 O -0.56 -1.63 12.88 -148.98 -1.92 -3.55 16 24 Si 1.01 0.89 25.87 68.60 1.77 2.66 16 25 H -0.26 -0.82 7.11 99.48 0.71 -0.11 16 26 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 27 H -0.26 -0.44 7.11 99.48 0.71 0.27 16 28 N -0.53 -1.12 6.07 -171.13 -1.04 -2.16 16 29 C -0.18 -1.52 7.42 22.48 0.17 -1.36 16 30 H 0.06 0.21 7.79 -2.39 -0.02 0.19 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.05 0.31 7.96 -2.38 -0.02 0.30 16 33 H 0.07 -0.19 7.79 -2.39 -0.02 -0.20 16 34 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.06 -0.09 7.79 -2.39 -0.02 -0.10 16 36 H 0.05 0.19 7.97 -2.38 -0.02 0.17 16 37 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.07 -0.03 7.79 -2.39 -0.02 -0.05 16 39 H 0.06 0.26 7.37 -2.39 -0.02 0.24 16 40 H 0.09 0.04 7.79 -2.39 -0.02 0.02 16 41 H 0.06 0.34 7.79 -2.39 -0.02 0.32 16 42 H 0.08 -0.09 7.79 -2.39 -0.02 -0.11 16 43 H 0.09 -0.21 7.79 -2.39 -0.02 -0.23 16 44 H 0.07 -0.02 7.38 -2.39 -0.02 -0.04 16 45 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 46 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 47 H 0.16 -1.41 8.06 -2.91 -0.02 -1.43 16 48 H 0.43 -5.17 8.82 -92.71 -0.82 -5.98 16 49 H 0.15 -1.72 8.14 -2.39 -0.02 -1.74 16 50 H 0.14 -1.68 8.14 -2.39 -0.02 -1.70 16 51 H 0.14 0.52 8.06 -2.91 -0.02 0.50 16 52 H 0.14 0.60 6.22 -2.91 -0.02 0.58 16 53 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 54 H 0.39 -0.43 8.70 -74.06 -0.64 -1.08 16 55 H 0.42 -0.76 8.96 -92.71 -0.83 -1.60 16 56 H 0.12 1.61 6.22 -2.91 -0.02 1.59 16 Total: 0.00 -24.16 451.66 3.04 -21.11 By element: Atomic # 1 Polarization: -10.92 SS G_CDS: -0.64 Total: -11.56 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 6.75 Total: 1.91 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -2.66 Total: -1.65 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -2.75 Total: -15.73 kcal Atomic # 14 Polarization: 3.57 SS G_CDS: 2.34 Total: 5.91 kcal Total: -24.16 3.04 -21.11 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17313436_14644196.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.562 kcal (2) G-P(sol) polarization free energy of solvation -24.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds