Wall clock time and date at job start Sun Mar 7 2021 09:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.53000 * 109.47037 * 240.00294 * 2 1 3 5 5 Si 1.86302 * 109.47149 * 120.00213 * 2 1 3 6 6 C 1.86296 * 109.47178 * 59.99663 * 5 2 1 7 7 C 1.86305 * 109.46849 * 299.99726 * 5 2 1 8 8 O 1.63097 * 109.47094 * 180.02562 * 5 2 1 9 9 C 1.35900 * 113.99969 * 179.97438 * 8 5 2 10 10 C 1.38769 * 120.01797 * 269.72425 * 9 8 5 11 11 C 1.38224 * 120.08494 * 179.73961 * 10 9 8 12 12 C 1.38114 * 120.12444 * 0.51309 * 11 10 9 13 13 C 1.38959 * 120.04189 * 359.76688 * 12 11 10 14 14 N 1.39824 * 120.04320 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99506 * 213.37359 * 14 13 12 16 16 O 1.21697 * 120.00667 * 5.28654 * 15 14 13 17 17 C 1.46643 * 119.99581 * 185.27947 * 15 14 13 18 18 C 1.37899 * 126.23688 * 180.02562 * 17 15 14 19 19 C 1.39825 * 107.09045 * 179.97438 * 18 17 15 20 20 C 1.35459 * 107.86702 * 0.02562 * 19 18 17 21 21 C 1.50698 * 125.56369 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46980 * 119.97426 * 21 20 19 23 23 Si 1.86295 * 109.47105 * 359.97374 * 21 20 19 24 24 H 1.48504 * 109.46770 * 180.02562 * 23 21 20 25 25 H 1.48494 * 109.47314 * 299.99740 * 23 21 20 26 26 H 1.48495 * 109.47419 * 60.00277 * 23 21 20 27 27 N 1.35547 * 108.87126 * 359.76490 * 20 19 18 28 28 C 1.38616 * 120.01507 * 89.99930 * 9 8 5 29 29 H 1.08994 * 109.46755 * 300.00220 * 1 2 3 30 30 H 1.09003 * 109.46514 * 60.00077 * 1 2 3 31 31 H 1.08996 * 109.46860 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47161 * 179.97438 * 3 2 1 33 33 H 1.09008 * 109.47180 * 299.99768 * 3 2 1 34 34 H 1.08994 * 109.47561 * 60.00273 * 3 2 1 35 35 H 1.09009 * 109.47051 * 299.99339 * 4 2 1 36 36 H 1.08999 * 109.47455 * 59.99725 * 4 2 1 37 37 H 1.08997 * 109.47203 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47285 * 300.00612 * 6 5 2 39 39 H 1.08999 * 109.46867 * 180.02562 * 6 5 2 40 40 H 1.09001 * 109.46756 * 60.00290 * 6 5 2 41 41 H 1.08994 * 109.46823 * 179.97438 * 7 5 2 42 42 H 1.08996 * 109.47485 * 300.00356 * 7 5 2 43 43 H 1.09008 * 109.46913 * 60.00361 * 7 5 2 44 44 H 1.07995 * 119.95805 * 359.97438 * 10 9 8 45 45 H 1.07991 * 119.93521 * 180.26093 * 11 10 9 46 46 H 1.08005 * 119.97781 * 179.73786 * 12 11 10 47 47 H 0.96997 * 120.00419 * 33.38466 * 14 13 12 48 48 H 1.08001 * 126.45040 * 359.97438 * 18 17 15 49 49 H 1.07995 * 126.06837 * 180.02562 * 19 18 17 50 50 H 1.08999 * 109.46725 * 239.96893 * 21 20 19 51 51 H 0.96704 * 114.00011 * 180.02562 * 22 21 20 52 52 H 0.97004 * 125.68064 * 180.25004 * 27 20 19 53 53 H 1.08004 * 120.06381 * 359.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8783 1.5211 6 6 1.5300 -2.6347 1.5211 7 6 1.5301 0.0000 3.0423 8 8 3.7821 -0.8777 1.5214 9 6 4.3348 -1.4980 2.5969 10 6 4.6220 -0.7729 3.7447 11 6 5.1792 -1.4035 4.8413 12 6 5.4618 -2.7546 4.7945 13 6 5.1818 -3.4845 3.6457 14 7 5.4683 -4.8523 3.5982 15 6 5.8505 -5.4206 2.4374 16 8 6.0395 -4.7288 1.4542 17 6 6.0389 -6.8728 2.3592 18 6 6.4259 -7.5858 1.2441 19 6 6.4798 -8.9326 1.6157 20 6 6.1321 -9.0175 2.9222 21 6 6.0587 -10.2883 3.7289 22 8 6.9653 -10.2061 4.8305 23 14 6.5208 -11.7357 2.6509 24 1 6.4479 -12.9880 3.4457 25 1 5.5788 -11.8210 1.5062 26 1 7.9035 -11.5520 2.1414 27 7 5.8665 -7.7722 3.3870 28 6 4.6173 -2.8541 2.5458 29 1 -0.3632 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6768 1.9563 0.8899 35 1 1.6768 -1.7490 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 0.4401 -2.6347 1.5210 39 1 1.8930 -3.1484 2.4113 40 1 1.8934 -3.1485 0.6311 41 1 1.8930 -0.5141 3.9322 42 1 1.8934 1.0276 3.0423 43 1 0.4400 0.0000 3.0423 44 1 4.4063 0.2846 3.7827 45 1 5.3978 -0.8377 5.7348 46 1 5.9011 -3.2440 5.6513 47 1 5.3919 -5.3920 4.4004 48 1 6.6458 -7.1801 0.2676 49 1 6.7506 -9.7587 0.9749 50 1 5.0438 -10.4231 4.1029 51 1 6.9714 -10.9918 5.3943 52 1 5.5980 -7.5517 4.2926 53 1 4.3982 -3.4191 1.6518 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17313436_6580494.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:23:09 Heat of formation + Delta-G solvation = -80.854040 kcal Electronic energy + Delta-G solvation = -32366.026862 eV Core-core repulsion = 28134.023612 eV Total energy + Delta-G solvation = -4232.003250 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.178 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.68925 -41.47836 -40.10345 -37.92800 -37.64911 -36.91374 -35.70939 -32.45813 -31.85876 -31.10592 -30.30185 -29.32824 -29.10183 -27.89650 -27.46525 -26.94806 -24.48925 -23.63068 -22.63491 -21.61026 -21.26992 -20.58355 -19.93580 -19.14825 -18.51650 -17.41497 -17.36664 -17.00210 -16.79605 -16.31113 -16.26242 -16.04294 -15.85288 -15.44279 -15.17870 -14.92069 -14.86675 -14.81928 -14.65103 -14.40728 -14.09322 -13.93770 -13.92396 -13.62370 -13.59780 -13.48075 -13.38443 -13.24353 -13.01362 -12.95841 -12.72768 -12.69873 -12.48348 -12.29959 -12.26763 -12.01239 -11.94003 -11.73184 -11.71010 -11.51328 -11.25116 -10.57774 -10.49343 -10.16274 -10.16074 -9.66537 -9.43278 -9.12315 -0.08844 0.22526 0.43450 1.08124 1.29895 1.43870 1.52354 1.62540 1.63389 1.73707 1.95226 1.96715 2.09923 2.10933 2.32812 2.77827 3.30456 3.58108 3.83595 3.93956 4.02559 4.05810 4.07705 4.14729 4.16337 4.22831 4.28631 4.41692 4.42342 4.45864 4.52849 4.62063 4.65629 4.74966 4.76213 4.76932 4.79718 4.86390 4.94461 4.98142 5.04267 5.04710 5.14091 5.16806 5.20122 5.28737 5.34002 5.35887 5.39087 5.41744 5.49355 5.51687 5.53631 5.58885 5.67902 6.08921 6.15070 6.34640 6.75073 6.83082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.373 4.373 3 C -0.139 4.139 4 C -0.140 4.140 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.500 4.500 8 O -0.577 6.577 9 C 0.136 3.864 10 C -0.178 4.178 11 C -0.071 4.071 12 C -0.159 4.159 13 C 0.156 3.844 14 N -0.660 5.660 15 C 0.590 3.410 16 O -0.545 6.545 17 C -0.067 4.067 18 C -0.109 4.109 19 C -0.222 4.222 20 C 0.077 3.923 21 C -0.064 4.064 22 O -0.564 6.564 23 Si 1.000 3.000 24 H -0.248 1.248 25 H -0.259 1.259 26 H -0.274 1.274 27 N -0.508 5.508 28 C -0.182 4.182 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.147 0.853 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.424 0.576 48 H 0.148 0.852 49 H 0.157 0.843 50 H 0.110 0.890 51 H 0.406 0.594 52 H 0.432 0.568 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -4.278 8.003 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.417 4.417 3 C -0.196 4.196 4 C -0.198 4.198 5 Si 1.423 2.577 6 C -0.613 4.613 7 C -0.605 4.605 8 O -0.531 6.531 9 C 0.092 3.908 10 C -0.197 4.197 11 C -0.089 4.089 12 C -0.179 4.179 13 C 0.062 3.938 14 N -0.306 5.306 15 C 0.380 3.620 16 O -0.422 6.422 17 C -0.180 4.180 18 C -0.135 4.135 19 C -0.246 4.246 20 C -0.042 4.042 21 C -0.173 4.173 22 O -0.374 6.374 23 Si 0.823 3.177 24 H -0.172 1.172 25 H -0.183 1.183 26 H -0.198 1.198 27 N -0.106 5.106 28 C -0.203 4.203 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.165 0.835 45 H 0.183 0.817 46 H 0.176 0.824 47 H 0.263 0.737 48 H 0.166 0.834 49 H 0.174 0.826 50 H 0.127 0.873 51 H 0.257 0.743 52 H 0.272 0.728 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.785 -3.804 6.500 8.029 hybrid contribution -0.514 -0.337 0.576 0.842 sum -3.299 -4.141 7.076 8.837 Atomic orbital electron populations 1.21607 0.92884 1.02421 1.02822 1.25747 1.01088 1.02987 1.11870 1.21571 1.00745 0.94722 1.02552 1.21575 1.00585 1.00186 0.97409 0.76906 0.49376 0.65269 0.66128 1.27071 1.07809 1.22452 1.03968 1.26880 1.07821 1.09231 1.16543 1.83795 1.48913 1.75325 1.45038 1.18018 0.97072 0.89748 0.85969 1.21569 1.04021 1.01696 0.92383 1.21218 0.95330 0.93768 0.98570 1.21234 1.03724 0.94751 0.98158 1.17589 0.97308 0.83456 0.95456 1.43198 1.67104 1.07858 1.12430 1.17302 0.75818 0.85912 0.82925 1.90891 1.51236 1.63053 1.36985 1.20018 1.18486 0.88476 0.91041 1.21464 1.00985 0.93062 0.98032 1.20879 1.10805 0.97436 0.95489 1.20332 1.03788 0.85918 0.94180 1.24545 0.98110 0.99895 0.94784 1.86433 1.63093 1.46795 1.41057 0.84929 0.79927 0.74682 0.78209 1.17157 1.18284 1.19848 1.41819 1.51733 1.05295 1.11718 1.21183 1.04287 0.94822 0.99991 0.91155 0.92500 0.91931 0.92962 0.92654 0.91317 0.92381 0.92441 0.93273 0.89421 0.91758 0.91926 0.90810 0.90129 0.89465 0.83481 0.81717 0.82422 0.73745 0.83404 0.82568 0.87271 0.74269 0.72791 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.05 7.85 71.98 0.56 0.62 16 2 C -0.37 -0.73 0.53 -10.79 -0.01 -0.74 16 3 C -0.14 -0.26 7.85 71.98 0.56 0.30 16 4 C -0.14 -0.58 7.85 71.98 0.56 -0.02 16 5 Si 1.29 2.45 8.27 68.60 0.57 3.02 16 6 C -0.51 -1.71 8.31 113.37 0.94 -0.77 16 7 C -0.50 0.40 8.31 113.37 0.94 1.34 16 8 O -0.58 -4.50 8.52 -92.42 -0.79 -5.29 16 9 C 0.14 1.03 4.63 22.49 0.10 1.13 16 10 C -0.18 -0.46 8.80 22.39 0.20 -0.27 16 11 C -0.07 0.09 10.03 22.24 0.22 0.31 16 12 C -0.16 0.12 9.96 22.41 0.22 0.34 16 13 C 0.16 0.72 6.27 38.17 0.24 0.96 16 14 N -0.66 -1.03 5.33 -307.14 -1.64 -2.66 16 15 C 0.59 4.75 7.52 86.44 0.65 5.40 16 16 O -0.54 -9.03 14.57 -4.34 -0.06 -9.10 16 17 C -0.07 -0.33 7.05 40.34 0.28 -0.05 16 18 C -0.11 -0.71 10.65 22.57 0.24 -0.47 16 19 C -0.22 -0.69 9.32 22.01 0.21 -0.48 16 20 C 0.08 -0.01 6.51 41.34 0.27 0.26 16 21 C -0.06 0.39 3.07 71.24 0.22 0.61 16 22 O -0.56 3.33 12.86 -148.98 -1.92 1.42 16 23 Si 1.00 -4.78 25.82 68.60 1.77 -3.01 16 24 H -0.25 1.43 7.11 99.48 0.71 2.14 16 25 H -0.26 0.69 7.11 99.48 0.71 1.39 16 26 H -0.27 -0.07 7.11 99.48 0.71 0.64 16 27 N -0.51 0.64 6.00 -171.93 -1.03 -0.39 16 28 C -0.18 -1.72 7.38 22.49 0.17 -1.56 16 29 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 30 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 32 H 0.05 0.18 7.97 -2.38 -0.02 0.16 16 33 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 34 H 0.07 -0.06 7.79 -2.39 -0.02 -0.07 16 35 H 0.06 0.19 7.79 -2.38 -0.02 0.17 16 36 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 38 H 0.09 0.04 7.79 -2.39 -0.02 0.02 16 39 H 0.06 0.27 7.38 -2.39 -0.02 0.26 16 40 H 0.06 0.34 7.79 -2.39 -0.02 0.32 16 41 H 0.07 -0.05 7.39 -2.39 -0.02 -0.07 16 42 H 0.08 -0.14 7.79 -2.39 -0.02 -0.15 16 43 H 0.09 -0.24 7.79 -2.38 -0.02 -0.26 16 44 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 45 H 0.17 -1.26 8.06 -2.92 -0.02 -1.28 16 46 H 0.16 -1.11 8.06 -2.91 -0.02 -1.13 16 47 H 0.42 -2.79 7.96 -92.71 -0.74 -3.53 16 48 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 49 H 0.16 0.03 6.17 -2.91 -0.02 0.01 16 50 H 0.11 -1.26 7.96 -2.39 -0.02 -1.28 16 51 H 0.41 -6.01 8.74 -74.05 -0.65 -6.66 16 52 H 0.43 -3.39 8.20 -92.71 -0.76 -4.15 16 53 H 0.12 1.66 6.42 -2.91 -0.02 1.64 16 Total: 0.00 -22.88 429.71 3.04 -19.84 By element: Atomic # 1 Polarization: -10.31 SS G_CDS: -0.45 Total: -10.76 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.59 Total: 6.94 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -2.67 Total: -3.05 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -2.77 Total: -12.97 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.34 Total: 0.01 kcal Total: -22.88 3.04 -19.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17313436_6580494.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.018 kcal (2) G-P(sol) polarization free energy of solvation -22.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds