Wall clock time and date at job start Sun Mar 7 2021 09:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33821 * 122.44951 * 2 1 4 4 C 1.50703 * 124.51949 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.47301 * 30.30500 * 4 3 2 6 6 Si 1.86302 * 109.47106 * 150.30885 * 4 3 2 7 7 H 1.48496 * 109.47057 * 59.99509 * 6 4 3 8 8 H 1.48498 * 109.47038 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46711 * 299.99653 * 6 4 3 10 10 S 1.70610 * 110.95901 * 180.27996 * 3 2 1 11 11 C 1.75832 * 91.56325 * 359.73108 * 10 3 2 12 12 C 1.46552 * 125.45782 * 180.02562 * 11 10 3 13 13 O 1.21708 * 119.99609 * 179.97438 * 12 11 10 14 14 N 1.34779 * 120.00156 * 359.96506 * 12 11 10 15 15 C 1.39830 * 119.99862 * 175.39203 * 14 12 11 16 16 C 1.38916 * 120.04169 * 214.82937 * 15 14 12 17 17 C 1.38157 * 120.03437 * 179.76620 * 16 15 14 18 18 C 1.38175 * 120.12940 * 0.51262 * 17 16 15 19 19 C 1.38814 * 120.08432 * 359.73836 * 18 17 16 20 20 O 1.35901 * 120.01331 * 179.97438 * 19 18 17 21 21 Si 1.63098 * 113.99989 * 270.02412 * 20 19 18 22 22 C 1.86300 * 109.47219 * 300.00278 * 21 20 19 23 23 C 1.86306 * 109.47329 * 60.00387 * 21 20 19 24 24 C 1.86302 * 109.47272 * 180.02562 * 21 20 19 25 25 C 1.52999 * 109.46787 * 60.00093 * 24 21 20 26 26 C 1.52991 * 109.47342 * 180.02562 * 24 21 20 27 27 C 1.52996 * 109.47235 * 300.00587 * 24 21 20 28 28 C 1.38569 * 119.96363 * 0.02562 * 19 18 17 29 29 C 1.36666 * 109.08384 * 359.97438 * 11 10 3 30 30 H 1.09005 * 109.46917 * 270.25058 * 1 2 3 31 31 H 1.09001 * 109.47245 * 30.24506 * 1 2 3 32 32 H 1.08997 * 109.47318 * 150.24738 * 1 2 3 33 33 H 1.09007 * 109.47059 * 270.30536 * 4 3 2 34 34 H 0.96708 * 113.99709 * 59.99734 * 5 4 3 35 35 H 0.97001 * 119.99788 * 355.39539 * 14 12 11 36 36 H 1.08004 * 119.97723 * 0.02562 * 16 15 14 37 37 H 1.08006 * 119.93463 * 180.23421 * 17 16 15 38 38 H 1.07996 * 119.95331 * 179.76383 * 18 17 16 39 39 H 1.09000 * 109.47293 * 60.00234 * 22 21 20 40 40 H 1.09007 * 109.47168 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47239 * 299.99904 * 22 21 20 42 42 H 1.09003 * 109.47010 * 59.99482 * 23 21 20 43 43 H 1.08998 * 109.47273 * 179.97438 * 23 21 20 44 44 H 1.08999 * 109.46813 * 300.00179 * 23 21 20 45 45 H 1.08997 * 109.47433 * 60.00156 * 25 24 21 46 46 H 1.09000 * 109.47143 * 180.02562 * 25 24 21 47 47 H 1.09005 * 109.47664 * 299.99987 * 25 24 21 48 48 H 1.08995 * 109.47612 * 60.00109 * 26 24 21 49 49 H 1.08999 * 109.47390 * 180.02562 * 26 24 21 50 50 H 1.09003 * 109.47441 * 300.00115 * 26 24 21 51 51 H 1.08998 * 109.47273 * 59.99344 * 27 24 21 52 52 H 1.09000 * 109.47353 * 179.97438 * 27 24 21 53 53 H 1.08999 * 109.46928 * 299.99667 * 27 24 21 54 54 H 1.08004 * 120.06435 * 180.02562 * 28 19 18 55 55 H 1.07999 * 123.36042 * 180.02562 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 -0.0006 5 8 0.3784 2.4997 0.6788 6 14 2.7964 3.6848 0.8696 7 1 4.1027 3.7019 0.1636 8 1 2.2157 5.0516 0.8685 9 1 2.9963 3.2325 2.2699 10 16 3.8969 0.7894 -0.0078 11 6 3.5938 -0.9426 -0.0028 12 6 4.6231 -1.9858 -0.0054 13 8 4.3002 -3.1592 -0.0011 14 7 5.9273 -1.6458 -0.0129 15 6 6.9088 -2.6371 0.0819 16 6 8.0894 -2.3835 0.7687 17 6 9.0571 -3.3648 0.8664 18 6 8.8581 -4.5966 0.2728 19 6 7.6825 -4.8538 -0.4191 20 8 7.4886 -6.0657 -1.0028 21 14 8.0224 -6.1540 -2.5414 22 6 7.1288 -4.8933 -3.5821 23 6 9.8529 -5.8099 -2.5845 24 6 7.6946 -7.8596 -3.2156 25 6 6.1912 -8.1416 -3.1803 26 6 8.1959 -7.9426 -4.6586 27 6 8.4279 -8.8954 -2.3611 28 6 6.7075 -3.8740 -0.5152 29 6 2.2446 -1.1601 0.0050 30 1 -0.3633 0.0045 1.0277 31 1 -0.3634 0.8878 -0.5176 32 1 -0.3634 -0.8922 -0.5100 33 1 1.4886 2.8482 -1.0284 34 1 0.4334 2.2133 1.6009 35 1 6.1849 -0.7133 -0.0839 36 1 8.2491 -1.4201 1.2300 37 1 9.9728 -3.1671 1.4039 38 1 9.6181 -5.3603 0.3477 39 1 7.3202 -3.8953 -3.1878 40 1 7.4852 -4.9526 -4.6105 41 1 6.0579 -5.0946 -3.5569 42 1 10.3757 -6.5475 -1.9756 43 1 10.2097 -5.8693 -3.6127 44 1 10.0443 -4.8119 -2.1902 45 1 5.6687 -7.4037 -3.7890 46 1 5.9994 -9.1396 -3.5743 47 1 5.8344 -8.0826 -2.1520 48 1 9.2669 -7.7419 -4.6834 49 1 8.0037 -8.9403 -5.0532 50 1 7.6737 -7.2047 -5.2677 51 1 8.0712 -8.8363 -1.3328 52 1 8.2358 -9.8933 -2.7552 53 1 9.4989 -8.6944 -2.3861 54 1 5.7920 -4.0725 -1.0529 55 1 1.8018 -2.1451 0.0097 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17313436_6739946.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:23:51 Heat of formation + Delta-G solvation = -93.181473 kcal Electronic energy + Delta-G solvation = -34207.178288 eV Core-core repulsion = 29845.454878 eV Total energy + Delta-G solvation = -4361.723409 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 407.155 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.87205 -40.50468 -39.84136 -37.96121 -37.29162 -36.91937 -35.68077 -32.52168 -31.18103 -30.41838 -30.20826 -29.32979 -29.10933 -27.90093 -27.46628 -26.67249 -24.81878 -23.85767 -23.20077 -21.81587 -20.63373 -20.30138 -19.66160 -19.20746 -17.78956 -17.51606 -17.32234 -17.19341 -16.86308 -16.40669 -16.35637 -16.15136 -15.94975 -15.78313 -15.49786 -14.92665 -14.89866 -14.82458 -14.63585 -14.50038 -14.10687 -14.09326 -13.95227 -13.64375 -13.50735 -13.48790 -13.39577 -13.25148 -13.14271 -13.01611 -12.99609 -12.96122 -12.70117 -12.50500 -12.48852 -12.33860 -12.27322 -12.26349 -12.07551 -11.78662 -11.72937 -11.71368 -11.47104 -11.19285 -10.68817 -10.57604 -10.16628 -9.80091 -9.65086 -9.48363 -9.19203 -0.80818 0.13352 0.17378 0.27566 0.60676 0.98796 1.22709 1.30496 1.39130 1.45314 1.62250 1.73469 1.87451 1.91734 1.95949 2.31992 2.76530 3.34134 3.45777 3.64630 3.95082 4.02270 4.04384 4.05374 4.08035 4.16633 4.24028 4.28747 4.41632 4.43041 4.52353 4.53633 4.57966 4.61565 4.65259 4.74514 4.75510 4.76370 4.76798 4.79421 4.90038 4.94037 4.98173 5.03828 5.04352 5.13832 5.18032 5.20888 5.28237 5.33661 5.35362 5.36287 5.39204 5.41850 5.47205 5.49065 5.52445 5.58833 6.08214 6.12249 6.59547 6.78592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.102 4.102 3 C -0.229 4.229 4 C -0.038 4.038 5 O -0.536 6.536 6 Si 0.927 3.073 7 H -0.228 1.228 8 H -0.244 1.244 9 H -0.247 1.247 10 S 0.228 5.772 11 C -0.288 4.288 12 C 0.590 3.410 13 O -0.545 6.545 14 N -0.659 5.659 15 C 0.152 3.848 16 C -0.157 4.157 17 C -0.071 4.071 18 C -0.176 4.176 19 C 0.134 3.866 20 O -0.576 6.576 21 Si 1.288 2.712 22 C -0.512 4.512 23 C -0.500 4.500 24 C -0.372 4.372 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.181 4.181 29 C -0.047 4.047 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.141 0.859 34 H 0.390 0.610 35 H 0.423 0.577 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.148 0.852 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.055 0.945 53 H 0.068 0.932 54 H 0.124 0.876 55 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 6.261 0.170 7.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.349 4.349 4 C -0.151 4.151 5 O -0.343 6.343 6 Si 0.747 3.253 7 H -0.151 1.151 8 H -0.167 1.167 9 H -0.170 1.170 10 S 0.497 5.503 11 C -0.407 4.407 12 C 0.379 3.621 13 O -0.423 6.423 14 N -0.305 5.305 15 C 0.058 3.942 16 C -0.177 4.177 17 C -0.089 4.089 18 C -0.195 4.195 19 C 0.090 3.910 20 O -0.530 6.530 21 Si 1.423 2.577 22 C -0.614 4.614 23 C -0.605 4.605 24 C -0.417 4.417 25 C -0.197 4.197 26 C -0.197 4.197 27 C -0.196 4.196 28 C -0.202 4.202 29 C -0.081 4.081 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.240 0.760 35 H 0.262 0.738 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.074 0.926 53 H 0.087 0.913 54 H 0.142 0.858 55 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.624 6.993 0.227 8.387 hybrid contribution -1.687 -1.377 -0.189 2.186 sum 2.937 5.616 0.038 6.338 Atomic orbital electron populations 1.20638 0.87572 1.03358 1.03476 1.18777 0.99174 0.90066 1.03384 1.24807 0.98429 1.01726 1.09924 1.24518 0.92509 0.93765 1.04265 1.86528 1.27788 1.90060 1.29958 0.85904 0.78469 0.80022 0.80903 1.15138 1.16660 1.17040 1.82764 1.03158 0.95870 1.68477 1.24310 0.97437 0.97989 1.21014 1.17313 0.82001 0.87556 0.75260 1.90860 1.81909 1.19708 1.49856 1.43191 1.04150 1.10516 1.72615 1.17624 0.89963 0.89021 0.97629 1.21260 0.93164 1.02520 1.00740 1.21222 0.99606 0.91149 0.96911 1.21589 0.97094 0.99450 1.01352 1.18039 0.93470 0.83006 0.96470 1.83794 1.84880 1.32684 1.51668 0.76911 0.64621 0.65078 0.51088 1.27089 1.08794 1.13472 1.12016 1.26876 1.22068 1.05738 1.05779 1.25737 0.98469 1.15898 1.01557 1.21572 0.94720 1.01997 1.01446 1.21605 1.01676 1.02546 0.93918 1.21570 1.00439 0.98537 0.99032 1.21310 1.00850 0.93830 1.04230 1.20853 0.91027 1.00612 0.95643 0.90038 0.89536 0.92038 0.84214 0.76014 0.73763 0.82342 0.81591 0.83406 0.91805 0.89446 0.92001 0.90071 0.89466 0.90793 0.92444 0.92422 0.93263 0.91134 0.92474 0.91984 0.92940 0.92641 0.91290 0.85788 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.19 8.67 71.24 0.62 0.81 16 2 C -0.10 -0.04 5.75 -21.05 -0.12 -0.16 16 3 C -0.23 0.45 5.53 24.68 0.14 0.59 16 4 C -0.04 0.19 2.76 71.24 0.20 0.39 16 5 O -0.54 2.45 9.88 -148.98 -1.47 0.98 16 6 Si 0.93 -4.66 26.60 68.60 1.82 -2.84 16 7 H -0.23 1.28 7.10 99.48 0.71 1.99 16 8 H -0.24 0.57 7.11 99.48 0.71 1.27 16 9 H -0.25 0.89 7.11 99.48 0.71 1.59 16 10 S 0.23 -0.53 19.80 -56.49 -1.12 -1.65 16 11 C -0.29 -1.13 6.45 24.07 0.16 -0.97 16 12 C 0.59 4.81 7.62 86.41 0.66 5.46 16 13 O -0.54 -8.74 14.27 -4.38 -0.06 -8.80 16 14 N -0.66 -1.92 5.33 -307.22 -1.64 -3.55 16 15 C 0.15 0.79 6.29 38.17 0.24 1.03 16 16 C -0.16 0.08 9.96 22.41 0.22 0.30 16 17 C -0.07 0.10 10.03 22.24 0.22 0.32 16 18 C -0.18 -0.44 8.77 22.39 0.20 -0.24 16 19 C 0.13 1.02 4.64 22.49 0.10 1.13 16 20 O -0.58 -4.50 8.52 -92.43 -0.79 -5.29 16 21 Si 1.29 2.68 8.27 68.60 0.57 3.25 16 22 C -0.51 -1.97 8.31 113.37 0.94 -1.03 16 23 C -0.50 0.34 8.31 113.37 0.94 1.29 16 24 C -0.37 -0.75 0.53 -10.80 -0.01 -0.76 16 25 C -0.14 -0.59 7.85 71.98 0.56 -0.02 16 26 C -0.14 0.04 7.85 71.98 0.56 0.60 16 27 C -0.14 -0.25 7.84 71.98 0.56 0.31 16 28 C -0.18 -1.77 7.41 22.49 0.17 -1.61 16 29 C -0.05 -0.18 9.80 21.72 0.21 0.03 16 30 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 31 H 0.09 -0.15 6.44 -2.39 -0.02 -0.16 16 32 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 33 H 0.14 -1.01 7.96 -2.38 -0.02 -1.03 16 34 H 0.39 -3.85 8.67 -74.05 -0.64 -4.50 16 35 H 0.42 -1.62 7.94 -92.71 -0.74 -2.36 16 36 H 0.16 -1.07 8.06 -2.91 -0.02 -1.10 16 37 H 0.17 -1.31 8.06 -2.91 -0.02 -1.33 16 38 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 39 H 0.06 0.31 7.37 -2.39 -0.02 0.30 16 40 H 0.09 0.08 7.79 -2.38 -0.02 0.07 16 41 H 0.06 0.37 7.79 -2.39 -0.02 0.35 16 42 H 0.08 -0.14 7.79 -2.39 -0.02 -0.16 16 43 H 0.09 -0.22 7.79 -2.39 -0.02 -0.24 16 44 H 0.07 -0.04 7.37 -2.39 -0.02 -0.06 16 45 H 0.06 0.20 7.79 -2.39 -0.02 0.18 16 46 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.05 0.31 7.97 -2.38 -0.02 0.29 16 48 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 49 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 51 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 52 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 53 H 0.07 -0.06 7.80 -2.39 -0.02 -0.08 16 54 H 0.12 1.77 6.22 -2.91 -0.02 1.76 16 55 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -17.70 451.52 4.18 -13.52 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: 0.28 Total: -3.08 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.58 Total: 7.46 kcal Atomic # 7 Polarization: -1.92 SS G_CDS: -1.64 Total: -3.55 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -2.32 Total: -13.11 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.39 Total: 0.41 kcal Atomic # 16 Polarization: -0.53 SS G_CDS: -1.12 Total: -1.65 kcal Total: -17.70 4.18 -13.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17313436_6739946.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.660 kcal (2) G-P(sol) polarization free energy of solvation -17.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds