Wall clock time and date at job start Sun Mar 7 2021 09:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36781 * 125.80315 * 2 1 4 4 C 1.47243 * 126.94763 * 359.96442 * 3 2 1 5 5 O 1.21641 * 119.99572 * 0.21834 * 4 3 2 6 6 N 1.34775 * 120.00432 * 180.22017 * 4 3 2 7 7 C 1.39859 * 119.99767 * 175.38086 * 6 4 3 8 8 C 1.38903 * 120.04202 * 214.82554 * 7 6 4 9 9 C 1.38166 * 120.03703 * 179.70445 * 8 7 6 10 10 C 1.38166 * 120.12471 * 0.59547 * 9 8 7 11 11 C 1.38807 * 120.08772 * 359.68101 * 10 9 8 12 12 O 1.35897 * 120.01995 * 179.97438 * 11 10 9 13 13 Si 1.63110 * 113.99945 * 270.02489 * 12 11 10 14 14 C 1.86297 * 109.46830 * 299.99605 * 13 12 11 15 15 C 1.86294 * 109.47088 * 59.99993 * 13 12 11 16 16 C 1.86294 * 109.46820 * 180.02562 * 13 12 11 17 17 C 1.53000 * 109.47790 * 59.99973 * 16 13 12 18 18 C 1.53008 * 109.47044 * 179.97438 * 16 13 12 19 19 C 1.53005 * 109.47348 * 299.99546 * 16 13 12 20 20 C 1.38580 * 119.96381 * 0.02562 * 11 10 9 21 21 C 1.46692 * 106.11223 * 180.12586 * 3 2 1 22 22 C 1.34481 * 106.33489 * 359.57926 * 21 3 2 23 23 C 1.50702 * 125.56914 * 180.28550 * 22 21 3 24 24 O 1.42902 * 109.47340 * 119.97245 * 23 22 21 25 25 Si 1.86296 * 109.47316 * 359.96940 * 23 22 21 26 26 H 1.48504 * 109.46900 * 300.00196 * 25 23 22 27 27 H 1.48500 * 109.47017 * 60.00103 * 25 23 22 28 28 H 1.48496 * 109.47343 * 180.02562 * 25 23 22 29 29 N 1.34669 * 125.80168 * 179.64836 * 2 1 3 30 30 H 1.08998 * 109.46868 * 270.32825 * 1 2 3 31 31 H 1.09000 * 109.46915 * 30.32926 * 1 2 3 32 32 H 1.08998 * 109.47194 * 150.32496 * 1 2 3 33 33 H 0.96994 * 119.99687 * 355.38550 * 6 4 3 34 34 H 1.08006 * 119.97941 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.93057 * 180.30254 * 9 8 7 36 36 H 1.08003 * 119.95499 * 179.70142 * 10 9 8 37 37 H 1.09004 * 109.47196 * 60.00138 * 14 13 12 38 38 H 1.09003 * 109.47070 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47608 * 300.00406 * 14 13 12 40 40 H 1.09002 * 109.47404 * 60.00047 * 15 13 12 41 41 H 1.09003 * 109.47334 * 180.02562 * 15 13 12 42 42 H 1.09004 * 109.46899 * 299.99838 * 15 13 12 43 43 H 1.09002 * 109.47063 * 59.99606 * 17 16 13 44 44 H 1.08992 * 109.47722 * 179.97438 * 17 16 13 45 45 H 1.08998 * 109.46779 * 300.00065 * 17 16 13 46 46 H 1.08999 * 109.46892 * 59.99740 * 18 16 13 47 47 H 1.08995 * 109.47313 * 179.97438 * 18 16 13 48 48 H 1.09002 * 109.46897 * 299.99835 * 18 16 13 49 49 H 1.08998 * 109.46778 * 60.00206 * 19 16 13 50 50 H 1.09002 * 109.47059 * 180.02562 * 19 16 13 51 51 H 1.09003 * 109.46843 * 300.00371 * 19 16 13 52 52 H 1.07997 * 120.06847 * 180.02562 * 20 11 10 53 53 H 1.08010 * 126.83105 * 179.83582 * 21 3 2 54 54 H 1.09007 * 109.46778 * 239.96714 * 23 22 21 55 55 H 0.96703 * 114.00008 * 180.02562 * 24 23 22 56 56 H 0.96997 * 124.85635 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1093 0.0000 4 6 1.8706 2.5155 -0.0007 5 8 0.6841 2.7839 0.0026 6 7 2.7854 3.5053 -0.0051 7 6 2.3731 4.8381 -0.1034 8 6 3.1481 5.7562 -0.8004 9 6 2.7376 7.0715 -0.9026 10 6 1.5623 7.4798 -0.3018 11 6 0.7867 6.5680 0.4009 12 8 -0.3688 6.9712 0.9917 13 14 -0.1829 7.4913 2.5264 14 6 0.5158 6.1141 3.5684 15 6 0.9839 8.9434 2.5529 16 6 -1.8361 8.0097 3.2109 17 6 -2.7940 6.8168 3.1893 18 6 -1.6619 8.4970 4.6508 19 6 -2.4106 9.1406 2.3553 20 6 1.1918 5.2465 0.5006 21 6 3.6883 0.6151 -0.0031 22 6 3.6096 -0.7274 0.0048 23 6 4.7821 -1.6742 0.0112 24 8 4.7290 -2.4903 1.1832 25 14 6.3687 -0.6980 0.0057 26 1 6.4239 0.1499 -1.2122 27 1 6.4230 0.1652 1.2128 28 1 7.5240 -1.6310 0.0114 29 7 2.2948 -1.0922 0.0067 30 1 -0.3633 0.0059 1.0276 31 1 -0.3633 0.8870 -0.5189 32 1 -0.3633 -0.8929 -0.5088 33 1 3.7296 3.2932 0.0598 34 1 4.0695 5.4405 -1.2672 35 1 3.3391 7.7828 -1.4491 36 1 1.2465 8.5097 -0.3793 37 1 1.4831 5.8103 3.1680 38 1 0.6405 6.4618 4.5939 39 1 -0.1668 5.2645 3.5529 40 1 0.5750 9.7492 1.9432 41 1 1.1085 9.2908 3.5785 42 1 1.9511 8.6397 2.1524 43 1 -2.3847 6.0111 3.7989 44 1 -3.7611 7.1199 3.5902 45 1 -2.9182 6.4692 2.1637 46 1 -0.9794 9.3468 4.6666 47 1 -2.6290 8.8007 5.0512 48 1 -1.2528 7.6911 5.2601 49 1 -2.5348 8.7930 1.3297 50 1 -3.3777 9.4441 2.7561 51 1 -1.7283 9.9904 2.3708 52 1 0.5895 4.5356 1.0465 53 1 4.5892 1.2109 -0.0064 54 1 4.7421 -2.3079 -0.8748 55 1 5.4551 -3.1249 1.2537 56 1 1.9735 -2.0074 0.0120 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17313436_9865296.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:30:00 Heat of formation + Delta-G solvation = -87.245587 kcal Electronic energy + Delta-G solvation = -34760.093197 eV Core-core repulsion = 30372.275170 eV Total energy + Delta-G solvation = -4387.818027 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 390.193 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.57547 -41.41973 -39.98988 -37.85627 -37.64418 -36.89997 -35.51057 -33.04447 -32.49501 -31.07795 -30.26690 -29.30792 -29.14989 -28.96257 -27.88341 -27.43504 -25.80759 -24.32609 -23.60410 -22.55368 -21.52011 -20.76658 -20.51111 -19.20715 -18.56297 -18.45738 -17.33268 -17.20323 -17.10075 -16.73251 -16.29274 -16.15552 -15.98686 -15.83928 -15.33974 -15.19645 -15.00509 -14.90694 -14.80971 -14.68398 -14.43846 -14.07700 -14.06050 -13.96829 -13.83795 -13.54606 -13.50093 -13.45728 -13.33268 -13.21582 -12.99556 -12.96083 -12.94331 -12.63189 -12.53801 -12.45759 -12.23321 -12.17105 -11.98281 -11.91317 -11.70686 -11.68833 -11.29384 -10.91799 -10.53922 -10.46614 -10.14595 -10.02792 -9.56888 -9.28553 -9.03525 0.12365 0.31875 0.69678 1.03875 1.19511 1.34008 1.51982 1.61423 1.65183 1.89413 1.97479 2.00328 2.30134 2.36511 2.39279 2.86249 3.29457 3.76639 3.80980 3.90823 4.02539 4.06570 4.07352 4.10478 4.16975 4.24280 4.34699 4.35119 4.43124 4.44456 4.54851 4.62127 4.63525 4.64185 4.65513 4.68778 4.76641 4.77878 4.78458 4.81041 4.91324 4.95890 5.05496 5.06032 5.13763 5.15772 5.28862 5.29717 5.33076 5.36347 5.40126 5.43617 5.49299 5.51485 5.56978 5.59764 5.64082 5.80190 6.17179 6.37727 6.46905 6.75049 7.13462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.119 3.881 3 C -0.261 4.261 4 C 0.589 3.411 5 O -0.559 6.559 6 N -0.661 5.661 7 C 0.158 3.842 8 C -0.162 4.162 9 C -0.072 4.072 10 C -0.181 4.181 11 C 0.134 3.866 12 O -0.576 6.576 13 Si 1.289 2.711 14 C -0.512 4.512 15 C -0.501 4.501 16 C -0.372 4.372 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.181 4.181 21 C -0.174 4.174 22 C 0.030 3.970 23 C -0.064 4.064 24 O -0.567 6.567 25 Si 0.998 3.002 26 H -0.251 1.251 27 H -0.268 1.268 28 H -0.251 1.251 29 N -0.525 5.525 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.424 0.576 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.055 0.945 51 H 0.067 0.933 52 H 0.125 0.875 53 H 0.163 0.837 54 H 0.101 0.899 55 H 0.403 0.597 56 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -3.086 -0.921 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.001 4.001 3 C -0.271 4.271 4 C 0.381 3.619 5 O -0.438 6.438 6 N -0.307 5.307 7 C 0.063 3.937 8 C -0.182 4.182 9 C -0.090 4.090 10 C -0.200 4.200 11 C 0.090 3.910 12 O -0.530 6.530 13 Si 1.424 2.576 14 C -0.613 4.613 15 C -0.605 4.605 16 C -0.416 4.416 17 C -0.197 4.197 18 C -0.197 4.197 19 C -0.196 4.196 20 C -0.202 4.202 21 C -0.198 4.198 22 C -0.080 4.080 23 C -0.173 4.173 24 O -0.377 6.377 25 Si 0.819 3.181 26 H -0.175 1.175 27 H -0.192 1.192 28 H -0.175 1.175 29 N -0.121 5.121 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.263 0.737 34 H 0.173 0.827 35 H 0.181 0.819 36 H 0.164 0.836 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.086 0.914 52 H 0.143 0.857 53 H 0.180 0.820 54 H 0.118 0.882 55 H 0.254 0.746 56 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 5.872 -2.377 -1.021 6.416 hybrid contribution -0.013 -1.262 0.426 1.332 sum 5.859 -3.639 -0.595 6.923 Atomic orbital electron populations 1.20608 0.86031 1.04698 1.03977 1.20579 0.94366 0.85635 0.99543 1.19861 0.93997 0.91066 1.22148 1.17693 0.84936 0.84850 0.74445 1.90760 1.17793 1.84436 1.50857 1.43184 1.11302 1.03343 1.72839 1.17679 0.95165 0.84052 0.96764 1.21238 1.02474 0.93484 1.01028 1.21185 0.95115 0.95669 0.97074 1.21532 0.96105 1.00631 1.01747 1.18043 0.84705 0.91888 0.96384 1.83786 1.35072 1.82611 1.51547 0.76890 0.65121 0.64350 0.51245 1.27092 1.06875 1.15418 1.11950 1.26890 1.11882 1.16073 1.05683 1.25724 1.14530 0.99741 1.01588 1.21568 0.99451 0.97182 1.01492 1.21608 1.02585 1.01558 0.93996 1.21569 1.01369 0.97576 0.99047 1.21313 0.98817 0.95850 1.04258 1.21932 0.95974 0.93153 1.08711 1.19954 0.84513 0.93962 1.09603 1.24563 1.03385 0.97723 0.91611 1.86445 1.54787 1.54343 1.42088 0.84984 0.73443 0.79041 0.80638 1.17472 1.19197 1.17505 1.41554 1.05245 1.09083 1.56234 0.89929 0.89872 0.89060 0.73701 0.82657 0.81909 0.83649 0.91937 0.89551 0.91942 0.90105 0.89522 0.90905 0.92451 0.92397 0.93199 0.91208 0.92428 0.91998 0.92910 0.92598 0.91369 0.85699 0.81989 0.88166 0.74575 0.72920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.23 9.87 71.24 0.70 0.47 16 2 C 0.12 0.52 7.18 41.78 0.30 0.82 16 3 C -0.26 -1.73 6.29 -19.04 -0.12 -1.85 16 4 C 0.59 5.89 7.65 86.61 0.66 6.56 16 5 O -0.56 -9.04 12.25 -4.16 -0.05 -9.09 16 6 N -0.66 -3.33 5.33 -306.63 -1.63 -4.96 16 7 C 0.16 1.11 6.30 38.16 0.24 1.35 16 8 C -0.16 -0.24 9.96 22.41 0.22 -0.02 16 9 C -0.07 -0.04 10.03 22.24 0.22 0.19 16 10 C -0.18 -0.75 8.77 22.39 0.20 -0.55 16 11 C 0.13 1.20 4.64 22.49 0.10 1.30 16 12 O -0.58 -5.09 8.52 -92.39 -0.79 -5.87 16 13 Si 1.29 3.94 8.27 68.60 0.57 4.50 16 14 C -0.51 -2.56 8.31 113.37 0.94 -1.62 16 15 C -0.50 -0.25 8.31 113.37 0.94 0.69 16 16 C -0.37 -0.97 0.53 -10.79 -0.01 -0.98 16 17 C -0.14 -0.64 7.85 71.98 0.56 -0.07 16 18 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 19 C -0.14 -0.32 7.85 71.98 0.56 0.24 16 20 C -0.18 -2.03 7.41 22.49 0.17 -1.86 16 21 C -0.17 -0.36 9.03 23.62 0.21 -0.15 16 22 C 0.03 0.01 6.51 40.98 0.27 0.28 16 23 C -0.06 0.32 3.07 71.24 0.22 0.54 16 24 O -0.57 2.30 12.86 -148.98 -1.92 0.38 16 25 Si 1.00 -5.34 25.84 68.60 1.77 -3.57 16 26 H -0.25 1.13 7.11 99.48 0.71 1.84 16 27 H -0.27 0.38 7.11 99.48 0.71 1.09 16 28 H -0.25 1.43 7.11 99.48 0.71 2.13 16 29 N -0.52 -0.07 5.90 -171.05 -1.01 -1.08 16 30 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.08 0.60 6.49 -2.39 -0.02 0.59 16 32 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.42 -0.64 7.96 -92.71 -0.74 -1.38 16 34 H 0.16 -0.70 8.06 -2.91 -0.02 -0.72 16 35 H 0.16 -0.96 8.06 -2.91 -0.02 -0.99 16 36 H 0.15 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.06 0.41 7.37 -2.38 -0.02 0.39 16 38 H 0.09 0.18 7.79 -2.39 -0.02 0.16 16 39 H 0.06 0.43 7.79 -2.39 -0.02 0.42 16 40 H 0.08 -0.05 7.79 -2.39 -0.02 -0.07 16 41 H 0.09 -0.13 7.79 -2.39 -0.02 -0.15 16 42 H 0.07 0.06 7.38 -2.38 -0.02 0.04 16 43 H 0.06 0.22 7.79 -2.39 -0.02 0.20 16 44 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.05 0.32 7.96 -2.39 -0.02 0.31 16 46 H 0.07 -0.15 7.80 -2.39 -0.02 -0.16 16 47 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 49 H 0.05 0.20 7.96 -2.39 -0.02 0.18 16 50 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.07 -0.02 7.80 -2.39 -0.02 -0.03 16 52 H 0.13 1.94 6.22 -2.91 -0.02 1.92 16 53 H 0.16 -0.45 5.86 -2.91 -0.02 -0.46 16 54 H 0.10 -0.96 7.96 -2.38 -0.02 -0.98 16 55 H 0.40 -5.22 8.74 -74.06 -0.65 -5.87 16 56 H 0.43 -2.11 8.96 -92.71 -0.83 -2.94 16 Total: 0.00 -21.48 447.78 3.36 -18.12 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -0.55 Total: -4.29 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.97 Total: 5.85 kcal Atomic # 7 Polarization: -3.39 SS G_CDS: -2.64 Total: -6.04 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -2.75 Total: -14.58 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.34 Total: 0.94 kcal Total: -21.48 3.36 -18.12 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17313436_9865296.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.124 kcal (2) G-P(sol) polarization free energy of solvation -21.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds