Wall clock time and date at job start Sun Mar 7 2021 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99867 * 2 1 4 4 C 1.53003 * 112.85214 * 294.01181 * 3 2 1 5 5 F 1.39892 * 109.47174 * 195.88973 * 4 3 2 6 6 F 1.39903 * 109.46818 * 315.89261 * 4 3 2 7 7 F 1.39897 * 109.47066 * 75.88766 * 4 3 2 8 8 C 1.53784 * 113.69164 * 162.74222 * 3 2 1 9 9 C 1.53778 * 87.08332 * 270.87307 * 8 3 2 10 10 H 1.08997 * 113.68955 * 220.00549 * 9 8 3 11 11 C 1.52995 * 113.61419 * 89.11356 * 9 8 3 12 12 N 1.46508 * 109.47188 * 87.50551 * 11 9 8 13 13 C 1.34773 * 120.00157 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99932 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00307 * 179.97438 * 13 12 11 16 16 O 1.42903 * 109.47536 * 179.97438 * 15 13 12 17 17 C 1.35913 * 116.99738 * 180.02562 * 16 15 13 18 18 C 1.38792 * 120.05393 * 180.02562 * 17 16 15 19 19 Br 1.89095 * 120.03734 * 359.97438 * 18 17 16 20 20 C 1.38242 * 119.92715 * 179.97438 * 18 17 16 21 21 C 1.38245 * 120.04487 * 359.97438 * 20 18 17 22 22 C 1.50697 * 119.94023 * 179.97438 * 21 20 18 23 23 O 1.42904 * 109.46798 * 299.99791 * 22 21 20 24 24 Si 1.86297 * 109.47123 * 179.97438 * 22 21 20 25 25 C 1.38282 * 120.11565 * 0.24961 * 21 20 18 26 26 C 1.38144 * 120.07553 * 359.50074 * 25 21 20 27 27 C 1.53780 * 113.61678 * 65.20899 * 3 2 1 28 28 H 1.09004 * 109.47177 * 64.84434 * 1 2 3 29 29 H 1.09001 * 109.47100 * 184.84365 * 1 2 3 30 30 H 1.08997 * 109.47262 * 304.84412 * 1 2 3 31 31 H 1.08999 * 113.61268 * 156.32165 * 8 3 2 32 32 H 1.09006 * 113.61192 * 25.41998 * 8 3 2 33 33 H 1.09001 * 109.47869 * 327.50430 * 11 9 8 34 34 H 1.08998 * 109.47450 * 207.50200 * 11 9 8 35 35 H 0.96998 * 119.99795 * 359.97438 * 12 11 9 36 36 H 1.09003 * 109.47069 * 59.99249 * 15 13 12 37 37 H 1.09000 * 109.47238 * 300.00063 * 15 13 12 38 38 H 1.07997 * 119.97913 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.47633 * 59.99783 * 22 21 20 40 40 H 0.96697 * 114.00009 * 299.99719 * 23 22 21 41 41 H 1.48500 * 110.00395 * 179.97438 * 24 22 21 42 42 H 1.48501 * 110.00211 * 301.31686 * 24 22 21 43 43 H 1.08005 * 119.95925 * 179.71888 * 25 21 20 44 44 H 1.07997 * 120.02617 * 180.25349 * 26 25 21 45 45 H 1.08999 * 113.61248 * 334.65033 * 27 3 2 46 46 H 1.09000 * 113.69374 * 203.76153 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7277 2.0816 -1.2879 5 9 2.6015 3.1704 -1.3774 6 9 1.9160 1.2406 -2.3900 7 9 0.4072 2.5433 -1.2740 8 6 3.4901 1.3230 0.4178 9 6 2.9981 1.4841 1.8658 10 1 3.5936 2.1809 2.4557 11 6 2.7565 0.1543 2.5826 12 7 4.0030 -0.2981 3.2057 13 6 4.0299 -1.4551 3.8964 14 8 3.0222 -2.1215 4.0025 15 6 5.3121 -1.9206 4.5369 16 8 5.0866 -3.1627 5.2065 17 6 6.1496 -3.7234 5.8413 18 6 6.0018 -4.9298 6.5114 19 35 4.3209 -5.7954 6.5430 20 6 7.0849 -5.4979 7.1558 21 6 8.3140 -4.8655 7.1323 22 6 9.4930 -5.4867 7.8360 23 8 9.1998 -5.6216 9.2281 24 14 10.9897 -4.3989 7.6186 25 6 8.4622 -3.6612 6.4691 26 6 7.3844 -3.0917 5.8193 27 6 1.7210 2.1085 1.2792 28 1 -0.3634 0.4369 -0.9302 29 1 -0.3633 -1.0240 0.0868 30 1 -0.3633 0.5871 0.8434 31 1 4.0389 2.1875 0.0443 32 1 4.0067 0.3808 0.2345 33 1 2.4193 -0.5909 1.8622 34 1 1.9945 0.2884 3.3503 35 1 4.8090 0.2348 3.1205 36 1 5.6497 -1.1757 5.2575 37 1 6.0741 -2.0546 3.7690 38 1 6.9710 -6.4368 7.6771 39 1 9.6938 -6.4697 7.4101 40 1 9.0106 -4.7843 9.6732 41 1 12.1592 -5.0001 8.3085 42 1 11.2859 -4.2253 6.1738 43 1 9.4225 -3.1671 6.4563 44 1 7.5019 -2.1531 5.2981 45 1 0.8094 1.8006 1.7913 46 1 1.7857 3.1880 1.1426 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17317796_6201210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:02:02 Heat of formation + Delta-G solvation = -222.810214 kcal Electronic energy + Delta-G solvation = -36504.858827 eV Core-core repulsion = 30801.922688 eV Total energy + Delta-G solvation = -5702.936139 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 454.048 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -51.20842 -48.75876 -48.63826 -41.87107 -41.57148 -40.45543 -39.12951 -37.53404 -37.24840 -35.44489 -33.61312 -32.03553 -31.12109 -30.31387 -29.41933 -28.27870 -27.08049 -26.90471 -26.24260 -24.05967 -23.40883 -22.46152 -21.77914 -20.77176 -19.81841 -19.64635 -19.49389 -19.31349 -18.54355 -18.15537 -17.65724 -17.41064 -17.12038 -17.05132 -16.58226 -16.46647 -16.12628 -16.05891 -15.78709 -15.74378 -15.59293 -15.52260 -15.25614 -15.12024 -14.94446 -14.84888 -14.80517 -14.71844 -14.44592 -14.39248 -14.20222 -13.88687 -13.83039 -13.70123 -13.42415 -13.15336 -12.84135 -12.40384 -12.38939 -12.28240 -12.25530 -12.17702 -11.92255 -11.83337 -11.80190 -11.05779 -11.03597 -10.90259 -10.51752 -10.22259 -9.98444 -9.33252 -5.14151 -0.10115 0.06125 0.72164 1.20864 1.28737 1.45122 1.51091 1.52686 1.89421 1.96259 2.33347 2.34489 2.51078 2.57763 2.76662 3.09244 3.26045 3.34400 3.35813 3.38439 3.50185 3.55308 3.58600 3.67501 3.77795 3.78427 4.01615 4.02851 4.07534 4.16745 4.20673 4.28337 4.28811 4.42624 4.43637 4.50378 4.52798 4.54595 4.63959 4.65038 4.75878 4.89948 4.92655 5.15761 5.19684 5.39581 5.59798 5.95453 6.25977 6.50395 7.04035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.330 6.330 3 C 0.040 3.960 4 C 0.436 3.564 5 F -0.176 7.176 6 F -0.174 7.174 7 F -0.181 7.181 8 C -0.116 4.116 9 C -0.113 4.113 10 H 0.102 0.898 11 C 0.131 3.869 12 N -0.726 5.726 13 C 0.515 3.485 14 O -0.505 6.505 15 C 0.037 3.963 16 O -0.274 6.274 17 C 0.160 3.840 18 C -0.123 4.123 19 Br -0.025 7.025 20 C -0.024 4.024 21 C -0.152 4.152 22 C -0.064 4.064 23 O -0.539 6.539 24 Si 0.689 3.311 25 C -0.061 4.061 26 C -0.200 4.200 27 C -0.144 4.144 28 H 0.053 0.947 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.116 0.884 40 H 0.380 0.620 41 H -0.253 1.253 42 H -0.257 1.257 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.096 0.904 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 7.326 1.359 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.248 6.248 3 C -0.002 4.002 4 C 0.381 3.619 5 F -0.157 7.157 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.153 4.153 9 C -0.131 4.131 10 H 0.120 0.880 11 C 0.009 3.991 12 N -0.381 5.381 13 C 0.299 3.701 14 O -0.378 6.378 15 C -0.041 4.041 16 O -0.185 6.185 17 C 0.112 3.888 18 C -0.203 4.203 19 Br 0.061 6.939 20 C -0.044 4.044 21 C -0.154 4.154 22 C -0.175 4.175 23 O -0.344 6.344 24 Si 0.591 3.409 25 C -0.079 4.079 26 C -0.220 4.220 27 C -0.182 4.182 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.162 0.838 39 H 0.133 0.867 40 H 0.227 0.773 41 H -0.178 1.178 42 H -0.182 1.182 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.115 0.885 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.390 5.691 0.947 6.691 hybrid contribution 0.182 0.561 -0.817 1.008 sum 3.572 6.252 0.130 7.201 Atomic orbital electron populations 1.23147 0.79314 1.04528 1.01476 1.88105 1.21275 1.21593 1.93787 1.23969 0.99839 0.86540 0.89887 1.21208 0.74331 0.78686 0.87636 1.93173 1.69394 1.56538 1.96618 1.93224 1.94783 1.70837 1.56700 1.93195 1.36571 1.89667 1.96843 1.23300 0.91282 1.05535 0.95141 1.22409 0.97800 0.97291 0.95634 0.87953 1.21348 0.85902 0.94682 0.97216 1.45724 1.13805 1.23468 1.55111 1.19908 0.89715 0.81252 0.79195 1.90821 1.34810 1.54061 1.58079 1.22547 0.97148 0.86538 0.97909 1.86290 1.32192 1.35379 1.64636 1.18638 0.86666 0.91628 0.91858 1.21165 0.94731 0.96850 1.07568 1.96814 1.21657 1.77400 1.98048 1.20880 0.89857 0.99176 0.94454 1.20271 0.96036 0.96465 1.02626 1.25015 1.02263 1.06540 0.83646 1.86522 1.92712 1.35994 1.19193 0.94842 0.76738 0.87057 0.82309 1.20931 0.98266 0.93975 0.94713 1.21163 0.91901 1.02636 1.06275 1.23579 0.99855 1.00968 0.93776 0.92885 0.87872 0.92527 0.86614 0.88379 0.88958 0.90692 0.76367 0.88418 0.88493 0.83801 0.86681 0.77290 1.17777 1.18189 0.84647 0.84124 0.88544 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.30 101.05 1.04 1.03 16 2 O -0.33 0.00 8.37 -35.23 -0.29 -0.30 16 3 C 0.04 -0.06 0.84 -89.80 -0.08 -0.14 16 4 C 0.44 0.16 2.52 37.16 0.09 0.26 16 5 F -0.18 -0.03 15.81 2.25 0.04 0.00 16 6 F -0.17 -0.41 17.10 2.25 0.04 -0.37 16 7 F -0.18 -0.17 15.39 2.25 0.03 -0.14 16 8 C -0.12 0.40 6.89 -25.92 -0.18 0.23 16 9 C -0.11 0.50 3.94 -89.81 -0.35 0.15 16 10 H 0.10 -0.64 8.14 -51.93 -0.42 -1.06 16 11 C 0.13 -0.29 5.26 -4.04 -0.02 -0.31 16 12 N -0.73 2.25 5.56 -60.29 -0.33 1.92 16 13 C 0.52 0.15 7.91 -10.99 -0.09 0.06 16 14 O -0.50 -2.86 16.50 -14.35 -0.24 -3.09 16 15 C 0.04 -0.08 5.22 36.00 0.19 0.11 16 16 O -0.27 -0.55 9.00 -39.38 -0.35 -0.91 16 17 C 0.16 0.18 6.68 -39.20 -0.26 -0.09 16 18 C -0.12 -0.27 6.24 -39.38 -0.25 -0.51 16 19 Br -0.02 -0.09 33.16 -68.01 -2.26 -2.34 16 20 C -0.02 -0.02 9.35 -39.58 -0.37 -0.39 16 21 C -0.15 0.11 5.39 -104.60 -0.56 -0.45 16 22 C -0.06 0.08 2.82 36.00 0.10 0.18 16 23 O -0.54 0.30 12.77 -35.23 -0.45 -0.15 16 24 Si 0.69 -1.58 29.78 -169.99 -5.06 -6.65 16 25 C -0.06 0.12 8.66 -39.60 -0.34 -0.22 16 26 C -0.20 0.36 9.04 -39.44 -0.36 0.00 16 27 C -0.14 0.51 6.51 -25.92 -0.17 0.34 16 28 H 0.05 -0.04 6.69 -51.93 -0.35 -0.39 16 29 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.06 -0.15 6.55 -51.93 -0.34 -0.49 16 31 H 0.12 -0.52 7.02 -51.93 -0.36 -0.88 16 32 H 0.10 -0.31 8.10 -51.93 -0.42 -0.73 16 33 H 0.09 0.00 6.13 -51.93 -0.32 -0.32 16 34 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.40 -2.65 8.47 -40.82 -0.35 -2.99 16 36 H 0.10 -0.51 7.66 -51.93 -0.40 -0.91 16 37 H 0.10 -0.47 7.66 -51.93 -0.40 -0.87 16 38 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 39 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 40 H 0.38 -1.68 8.70 45.56 0.40 -1.29 16 41 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 42 H -0.26 0.06 7.11 56.52 0.40 0.46 16 43 H 0.14 -0.59 4.87 -52.48 -0.26 -0.84 16 44 H 0.14 -0.70 6.30 -52.49 -0.33 -1.03 16 45 H 0.10 -0.36 6.63 -51.93 -0.34 -0.70 16 46 H 0.11 -0.48 8.05 -51.93 -0.42 -0.90 16 LS Contribution 408.48 15.07 6.16 6.16 Total: 0.00 -10.94 408.48 -9.51 -20.46 By element: Atomic # 1 Polarization: -9.64 SS G_CDS: -5.19 Total: -14.82 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.60 Total: 0.24 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -0.33 Total: 1.92 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -1.34 Total: -4.45 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.11 Total: -0.51 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.06 Total: -6.65 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.34 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -10.94 -9.51 -20.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17317796_6201210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.354 kcal (2) G-P(sol) polarization free energy of solvation -10.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds